Variant report

Variant	rs9919501
Chromosome Location	chr10:91484680-91484681
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr10:91480506..91482612-chr10:91483593..91486350,2	K562	blood:
2	chr10:91459598..91461760-chr10:91483207..91485724,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000138182	Chromatin interaction

Extended variants
information (count: 8 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:5)

rs_ID	r²[population]
rs28692479	1.00[AFR][1000 genomes]
rs35663373	1.00[AFR][1000 genomes]
rs58642944	1.00[AFR][1000 genomes]
rs61293356	1.00[AFR][1000 genomes]
rs9919385	1.00[YRI][hapmap];1.00[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1054572	chr10:91471956-91537070	Weak transcription Enhancers Strong transcription Genic enhancers ZNF genes & repeats Flanking Active TSS Active TSS	TF binding region Chromatin interactive region lncRNA miRNA target site	5 gene(s)	inside rSNPs	diseases
2	nsv1046241	chr10:91478562-91614437	Weak transcription Strong transcription Enhancers Active TSS Flanking Active TSS Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	6 gene(s)	inside rSNPs	diseases
3	nsv825506	chr10:91483821-91484704	Weak transcription Strong transcription	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:108 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:91461600-91546600	Weak transcription	Small Intestine	intestine
2	chr10:91461800-91505800	Weak transcription	Sigmoid Colon	Sigmoid Colon
3	chr10:91462000-91505800	Weak transcription	Left Ventricle	heart
4	chr10:91462200-91486400	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
5	chr10:91462200-91505600	Weak transcription	Esophagus	oesophagus
6	chr10:91462200-91505800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
7	chr10:91462200-91505800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
8	chr10:91462200-91505800	Weak transcription	Gastric	stomach
9	chr10:91462200-91505800	Weak transcription	Lung	lung
10	chr10:91462400-91488600	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
11	chr10:91462400-91505600	Weak transcription	Duodenum Smooth Muscle	Duodenum
12	chr10:91463400-91505600	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
13	chr10:91463400-91505800	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
14	chr10:91463400-91521600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
15	chr10:91464000-91486800	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
16	chr10:91465800-91505600	Weak transcription	iPS-15b Cell Line	embryonic stem cell
17	chr10:91466600-91506800	Strong transcription	HUES64 Cell Line	embryonic stem cell
18	chr10:91467000-91491000	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
19	chr10:91467200-91489000	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
20	chr10:91467200-91489000	Weak transcription	K562	blood
21	chr10:91467200-91505600	Weak transcription	Fetal Brain Female	brain
22	chr10:91467400-91498200	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
23	chr10:91467600-91538400	Weak transcription	Fetal Heart	heart
24	chr10:91467800-91507200	Weak transcription	Fetal Brain Male	brain
25	chr10:91468600-91488000	Weak transcription	Aorta	Aorta
26	chr10:91468800-91506600	Strong transcription	iPS-20b Cell Line	embryonic stem cell
27	chr10:91469200-91505000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
28	chr10:91469400-91494800	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
29	chr10:91469600-91523600	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
30	chr10:91470000-91503800	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
31	chr10:91470200-91505800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
32	chr10:91470400-91486600	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
33	chr10:91470400-91494800	Strong transcription	HUES48 Cell Line	embryonic stem cell
34	chr10:91472600-91530200	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
35	chr10:91473600-91505600	Weak transcription	Rectal Mucosa Donor 29	rectum
36	chr10:91473800-91505800	Weak transcription	Liver	Liver
37	chr10:91474600-91486600	Weak transcription	Brain Germinal Matrix	brain
38	chr10:91474600-91530200	Weak transcription	Placenta Amnion	Placenta Amnion
39	chr10:91475000-91494800	Strong transcription	HUES6 Cell Line	embryonic stem cell
40	chr10:91475200-91492000	Strong transcription	Foreskin Melanocyte Primary Cells skin03	Skin
41	chr10:91476000-91505400	Weak transcription	Rectal Mucosa Donor 31	rectum
42	chr10:91476000-91522400	Weak transcription	Placenta	Placenta
43	chr10:91476400-91508000	Weak transcription	Skeletal Muscle Female	skeletal muscle
44	chr10:91476800-91505600	Weak transcription	Brain Inferior Temporal Lobe	brain
45	chr10:91477600-91491400	Weak transcription	Adipose Nuclei	Adipose
46	chr10:91477800-91485600	Weak transcription	Fetal Lung	lung
47	chr10:91478400-91524200	Weak transcription	Primary T helper naive cells from peripheral blood	blood
48	chr10:91478400-91542400	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
49	chr10:91479200-91505600	Weak transcription	Duodenum Mucosa	Duodenum
50	chr10:91479600-91505000	Weak transcription	Fetal Intestine Large	intestine

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