Variant report

Variant	nsv825512
Chromosome Location	chr10:93005724-93006426
allele	n/a
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr10:93003094..93004667-chr10:93004691..93007667,2	K562	blood:
2	chr10:93004508..93007227-chr10:93007999..93010835,2	MCF-7	breast:

Extended variants
information (count: 16 )
Associated
traits (count: 70 )

Variant overlapped rSNPs/rCNVs (count:16 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	rs185863328	chr10:93005738-93005739	Weak transcription Enhancers Genic enhancers Flanking Active TSS	n/a	n/a	Overlapped CNVs	n/a
2	rs77566849	chr10:93005746-93005747	Weak transcription Enhancers Genic enhancers Flanking Active TSS	n/a	n/a	Overlapped CNVs	n/a
3	rs547990707	chr10:93005832-93005833	Weak transcription Enhancers Strong transcription Genic enhancers Flanking Active TSS	n/a	n/a	Overlapped CNVs	n/a
4	rs577752576	chr10:93005863-93005864	Weak transcription Enhancers Strong transcription Genic enhancers Flanking Active TSS	n/a	n/a	Overlapped CNVs	n/a
5	rs12241146	chr10:93005884-93005885	Weak transcription Enhancers Strong transcription Genic enhancers Flanking Active TSS	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
6	rs536556841	chr10:93006036-93006037	Weak transcription Enhancers Strong transcription Genic enhancers Flanking Active TSS	n/a	n/a	Overlapped CNVs	n/a
7	rs556479204	chr10:93006078-93006079	Weak transcription Enhancers Strong transcription Genic enhancers Flanking Active TSS	n/a	n/a	Overlapped CNVs	n/a
8	rs35720089	chr10:93006094-93006095	Weak transcription Enhancers Strong transcription Genic enhancers Flanking Active TSS	n/a	n/a	Overlapped CNVs	n/a
9	rs190337519	chr10:93006163-93006164	Weak transcription Enhancers Strong transcription Genic enhancers Flanking Active TSS	n/a	n/a	Overlapped CNVs	n/a
10	rs369466241	chr10:93006179-93006180	Weak transcription Enhancers Strong transcription Genic enhancers Flanking Active TSS	n/a	n/a	Overlapped CNVs	n/a
11	rs545166774	chr10:93006186-93006187	Weak transcription Enhancers Strong transcription Genic enhancers Flanking Active TSS	n/a	n/a	Overlapped CNVs	n/a
12	rs573613558	chr10:93006258-93006259	Weak transcription Enhancers Strong transcription Genic enhancers	n/a	n/a	Overlapped CNVs	n/a
13	rs138307285	chr10:93006299-93006300	Weak transcription Enhancers Strong transcription Genic enhancers	n/a	n/a	Overlapped CNVs	n/a
14	rs192376273	chr10:93006334-93006335	Weak transcription Enhancers Strong transcription Genic enhancers	n/a	n/a	Overlapped CNVs	n/a
15	rs540026920	chr10:93006413-93006414	Weak transcription Enhancers Genic enhancers	n/a	n/a	Overlapped CNVs	n/a
16	rs143789698	chr10:93006417-93006418	Weak transcription Enhancers Genic enhancers	n/a	n/a	Overlapped CNVs	n/a

Variant related diseases (count:70)

Disease	PMID	Source
Gastric cancer	17908304	CNVD
Chordoma	21602918	CNVD
Ewing''s sarcoma	21437220	CNVD
Glioblastoma multiforme	21080181	CNVD
Medulloblastoma	21979893	CNVD
Melanoma	18172304	CNVD
Pleomorphic xanthoastrocytoma	20730472	CNVD
Ewing''s sarcoma	17952124	CNVD
T-cell prolymphocytic leukemia	19278963	CNVD
Hodgkin''s lymphoma	17606441	CNVD
Acute lymphoblastic leukemia	20435627	CNVD
Acute lymphoblastic leukemia	20724749	CNVD
Autism	22495311	CNVD
Prostate cancer	18632612	CNVD
Cockayne syndrome	18421352	CNVD
Glioblastoma	16823260	CNVD
Medulloblastoma	16968546	CNVD
Neuroblastoma	17533364	CNVD
Squamous cell cancer	21044232	CNVD
Glioma	21971842	CNVD
Cancer	21637783	CNVD
Non-small cell lung cancer	21044232	CNVD
Non-syndromic sensorineural hearing loss	18471307	CNVD
Colorectal cancer	20709793	CNVD
Endometrial cancer	22040021	CNVD
Breast cancer	21264507	CNVD
Esophageal squamous carcinoma	21637470	CNVD
Liposarcoma	21253554	CNVD
Oligodendroglial tumors	17285580	CNVD
Lung cancer	18438408	CNVD
Endometrioid adenocarcinoma	16974079	CNVD
Usher syndrome	20538994	CNVD
Medulloblastoma	16783165	CNVD
Breast cancer	21785460	CNVD
Acute myeloid leukemia	20729466	CNVD
Prostate cancer	16573809	CNVD
Paraganglioma	17535989	CNVD
Submicroscopic aberration syndrome	21292638	CNVD
Gastrointestinal stromal cancer	17535989	CNVD
Pancreatic endocrine tumor	17639061	CNVD
Pulmonary chondroma	17535989	CNVD
Acute lymphoblastic leukemia	22237106	CNVD
Colorectal cancer	18645599	CNVD
Polyposis syndrome	18645599	CNVD
Prostate cancer	17245344	CNVD
Glioblastoma multiforme	17369134	CNVD
Glioblastoma multiforme	21750150	CNVD
Breast cancer	22032731	CNVD
Ovarian cancer	20844748	CNVD
Glioblastoma multiforme	17002787	CNVD
Astrocytoma	17387387	CNVD
Breast cancer	17603634	CNVD
Glioblastoma multiforme	17387387	CNVD
low-grade B-cell lymphoma tumor	18367492	CNVD
Breast cancer	21364760	CNVD
High-grade prostatic intraepithelial neoplasia	16573809	CNVD
Wilms tumour	21544195	CNVD
small cell lung cancer	20016488	CNVD
Chronic lymphocytic leukemia	21546498	CNVD
Urothelial carcinoma	21177765	CNVD
Breast cancer	16397240	CNVD
Chronic lymphocytic leukemia	21049055	CNVD
Cervical cancer	21062161	CNVD
Non-small cell lung cancer	21829676	CNVD
Melanoma	24453001	CNVD
Breast cancer	16608533	CNVD
Chronic lymphocytic leukemia	20421269	CNVD
Myelofibrosis	22110671	CNVD
Breast cancer	22522925	CNVD
Pancreatic cancer	17952125	CNVD

Chromatin state (count:116 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:92981400-93013000	Weak transcription	Ovary	ovary
2	chr10:92981400-93031000	Weak transcription	Colonic Mucosa	Colon
3	chr10:92981800-93013200	Weak transcription	Placenta	Placenta
4	chr10:92981800-93013400	Weak transcription	Fetal Stomach	stomach
5	chr10:92981800-93014600	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
6	chr10:92981800-93021600	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
7	chr10:92982000-93006600	Weak transcription	HUVEC	blood vessel
8	chr10:92982200-93015400	Weak transcription	NHLF	lung
9	chr10:92982600-93011600	Weak transcription	Rectal Mucosa Donor 29	rectum
10	chr10:92982600-93014800	Weak transcription	Spleen	Spleen
11	chr10:92982600-93043800	Weak transcription	Fetal Brain Male	brain
12	chr10:92982800-93012000	Weak transcription	Rectal Smooth Muscle	rectum
13	chr10:92982800-93039800	Weak transcription	Hela-S3	cervix
14	chr10:92983800-93013200	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
15	chr10:92984000-93005800	Weak transcription	Muscle Satellite Cultured Cells	--
16	chr10:92984000-93007600	Weak transcription	Psoas Muscle	Psoas
17	chr10:92984000-93007600	Weak transcription	Skeletal Muscle Male	skeletal muscle
18	chr10:92984000-93013600	Weak transcription	Primary hematopoietic stem cells	blood
19	chr10:92984200-93013400	Weak transcription	Fetal Muscle Leg	muscle
20	chr10:92984400-93012200	Weak transcription	Duodenum Smooth Muscle	Duodenum
21	chr10:92984600-93007200	Weak transcription	A549	lung
22	chr10:92984800-93007600	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
23	chr10:92985400-93007600	Weak transcription	Skeletal Muscle Female	skeletal muscle
24	chr10:92985400-93014800	Weak transcription	Small Intestine	intestine
25	chr10:92986400-93014600	Weak transcription	Fetal Intestine Small	intestine
26	chr10:92987200-93012000	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
27	chr10:92987600-93007200	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
28	chr10:92987600-93007200	Weak transcription	K562	blood
29	chr10:92987600-93007600	Weak transcription	Primary T cells fromperipheralblood	blood
30	chr10:92987600-93012000	Weak transcription	Adipose Nuclei	Adipose
31	chr10:92987600-93012200	Weak transcription	Fetal Kidney	kidney
32	chr10:92987600-93014800	Weak transcription	Gastric	stomach
33	chr10:92987800-93007400	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
34	chr10:92987800-93007400	Weak transcription	Liver	Liver
35	chr10:92987800-93011200	Weak transcription	Fetal Lung	lung
36	chr10:92988000-93014600	Weak transcription	Fetal Muscle Trunk	muscle
37	chr10:92988200-93012800	Weak transcription	Primary hematopoietic stem cells short term culture	blood
38	chr10:92988400-93011800	Weak transcription	Rectal Mucosa Donor 31	rectum
39	chr10:92991400-93014600	Weak transcription	Lung	lung
40	chr10:92994400-93014800	Weak transcription	Pancreas	Pancrea
41	chr10:92998400-93013200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
42	chr10:92999200-93025800	Weak transcription	Stomach Mucosa	stomach
43	chr10:93000200-93007400	Weak transcription	Brain Angular Gyrus	brain
44	chr10:93000800-93007400	Weak transcription	NH-A	brain
45	chr10:93001400-93011200	Genic enhancers	Dnd41	blood
46	chr10:93001400-93044600	Weak transcription	Esophagus	oesophagus
47	chr10:93001600-93009600	Weak transcription	HSMM	muscle
48	chr10:93001800-93006600	Weak transcription	Brain Inferior Temporal Lobe	brain
49	chr10:93001800-93008200	Enhancers	Primary T helper cells PMA-I stimulated	--
50	chr10:93002000-93007400	Weak transcription	Thymus	Thymus

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