Variant report

Variant	rs12241146
Chromosome Location	chr10:93005884-93005885
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr10:93004508..93007227-chr10:93007999..93010835,2	MCF-7	breast:
2	chr10:93003094..93004667-chr10:93004691..93007667,2	K562	blood:

Extended variants
information (count: 94 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:93)

rs_ID	r²[population]
rs10047356	1.00[CEU][hapmap];1.00[YRI][hapmap];0.93[AFR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10160027	0.95[AFR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10509624	1.00[CEU][hapmap];1.00[YRI][hapmap];0.93[AFR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1057971	1.00[CEU][hapmap];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11186513	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11186514	1.00[CEU][hapmap];0.96[YRI][hapmap];0.87[AFR][1000 genomes];0.86[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11186518	1.00[CEU][hapmap];0.96[AFR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11186519	0.90[AFR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11186522	1.00[CEU][hapmap];1.00[YRI][hapmap];0.93[AFR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11186524	1.00[CEU][hapmap];1.00[YRI][hapmap];0.95[AFR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11186525	1.00[CEU][hapmap];1.00[YRI][hapmap];0.95[AFR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11186526	1.00[CEU][hapmap];1.00[YRI][hapmap];0.95[AFR][1000 genomes];0.95[EUR][1000 genomes]
rs12241950	1.00[CEU][hapmap];0.93[YRI][hapmap];0.88[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12242548	1.00[CEU][hapmap];0.88[AFR][1000 genomes];0.81[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12244459	1.00[CEU][hapmap];0.81[YRI][hapmap];0.90[AFR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12249713	0.90[AFR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12251037	0.91[AFR][1000 genomes];0.81[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12253484	0.91[AFR][1000 genomes];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12253956	0.93[AFR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12263099	1.00[CEU][hapmap];1.00[YRI][hapmap];0.93[AFR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12264238	1.00[CEU][hapmap];0.96[YRI][hapmap];0.96[AFR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12266301	1.00[CEU][hapmap];0.93[YRI][hapmap];0.84[AFR][1000 genomes];0.86[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12267158	1.00[CEU][hapmap];0.96[AFR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12267225	1.00[CEU][hapmap];0.83[AFR][1000 genomes]
rs12268373	1.00[CEU][hapmap];1.00[YRI][hapmap];0.96[AFR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12763224	0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12764630	0.88[AFR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12768356	1.00[CEU][hapmap];0.96[YRI][hapmap];0.87[AFR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12774904	1.00[CEU][hapmap];1.00[EUR][1000 genomes]
rs12775958	1.00[CEU][hapmap];0.97[YRI][hapmap];0.96[AFR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12785046	0.82[AFR][1000 genomes];0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs14611	1.00[CEU][hapmap];0.93[YRI][hapmap];0.86[AFR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28459398	0.91[AFR][1000 genomes];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28661426	0.83[AFR][1000 genomes];0.81[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34328644	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34663905	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34771310	0.96[AFR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35112413	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35222869	0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35552285	0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35609498	0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35818406	0.91[AFR][1000 genomes];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35832595	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35843976	0.96[AFR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35848051	0.95[EUR][1000 genomes]
rs35981490	0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35984384	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4278434	0.93[AFR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4451623	0.93[AFR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56693041	0.95[AFR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61279719	0.95[AFR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6583759	1.00[ASN][1000 genomes]
rs6583761	0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs66464812	0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs66518918	0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs66530003	0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs66538532	0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs66727333	0.95[EUR][1000 genomes]
rs67319671	0.88[EUR][1000 genomes]
rs67769460	0.88[EUR][1000 genomes]
rs68172749	0.95[EUR][1000 genomes]
rs7068527	1.00[CEU][hapmap];0.89[YRI][hapmap];0.94[AFR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7070119	0.87[AFR][1000 genomes];0.81[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7070498	1.00[CEU][hapmap];0.93[YRI][hapmap];0.90[AFR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7071503	1.00[CEU][hapmap];1.00[YRI][hapmap];0.85[AFR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7074612	0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7075114	1.00[CEU][hapmap];1.00[YRI][hapmap];0.90[AFR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7080584	1.00[CEU][hapmap];0.93[YRI][hapmap];0.84[AFR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7082510	1.00[CEU][hapmap];0.96[YRI][hapmap];0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7084314	1.00[CEU][hapmap];1.00[YRI][hapmap];0.95[AFR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7085732	0.87[AFR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7085807	0.93[AFR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7090340	1.00[CEU][hapmap];0.92[YRI][hapmap];0.90[AFR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7090907	0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7099079	0.91[AFR][1000 genomes];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7894133	0.85[YRI][hapmap];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7896934	1.00[CEU][hapmap];0.93[YRI][hapmap];0.86[AFR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7897104	1.00[CEU][hapmap];1.00[YRI][hapmap];0.92[AFR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7900499	0.94[AFR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7900890	0.94[AFR][1000 genomes];0.95[EUR][1000 genomes]
rs7903610	1.00[CEU][hapmap];1.00[YRI][hapmap];0.91[AFR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7905513	0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7911817	1.00[CEU][hapmap];1.00[YRI][hapmap];0.95[AFR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7912140	1.00[CEU][hapmap];1.00[YRI][hapmap];0.95[AFR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7912950	1.00[CEU][hapmap];0.93[YRI][hapmap];0.90[AFR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7915050	1.00[CEU][hapmap];0.92[YRI][hapmap];0.94[AFR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7915347	1.00[CEU][hapmap];1.00[YRI][hapmap];0.95[AFR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7917134	1.00[CEU][hapmap];0.96[YRI][hapmap];0.91[AFR][1000 genomes];0.86[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7919961	1.00[CEU][hapmap];1.00[YRI][hapmap];0.95[AFR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7920860	1.00[CEU][hapmap];0.93[YRI][hapmap];0.91[AFR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7921621	1.00[CEU][hapmap];1.00[YRI][hapmap];0.93[AFR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9651430	0.82[CEU][hapmap];0.96[YRI][hapmap];0.90[AFR][1000 genomes];0.86[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9651432	0.87[AFR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv825512	chr10:93005724-93006426	Weak transcription Flanking Active TSS Enhancers Genic enhancers Strong transcription	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:95 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:92981400-93013000	Weak transcription	Ovary	ovary
2	chr10:92981400-93031000	Weak transcription	Colonic Mucosa	Colon
3	chr10:92981800-93013200	Weak transcription	Placenta	Placenta
4	chr10:92981800-93013400	Weak transcription	Fetal Stomach	stomach
5	chr10:92981800-93014600	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
6	chr10:92981800-93021600	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
7	chr10:92982000-93006600	Weak transcription	HUVEC	blood vessel
8	chr10:92982200-93015400	Weak transcription	NHLF	lung
9	chr10:92982600-93011600	Weak transcription	Rectal Mucosa Donor 29	rectum
10	chr10:92982600-93014800	Weak transcription	Spleen	Spleen
11	chr10:92982600-93043800	Weak transcription	Fetal Brain Male	brain
12	chr10:92982800-93012000	Weak transcription	Rectal Smooth Muscle	rectum
13	chr10:92982800-93039800	Weak transcription	Hela-S3	cervix
14	chr10:92983800-93013200	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
15	chr10:92984000-93007600	Weak transcription	Psoas Muscle	Psoas
16	chr10:92984000-93007600	Weak transcription	Skeletal Muscle Male	skeletal muscle
17	chr10:92984000-93013600	Weak transcription	Primary hematopoietic stem cells	blood
18	chr10:92984200-93013400	Weak transcription	Fetal Muscle Leg	muscle
19	chr10:92984400-93012200	Weak transcription	Duodenum Smooth Muscle	Duodenum
20	chr10:92984600-93007200	Weak transcription	A549	lung
21	chr10:92984800-93007600	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
22	chr10:92985400-93007600	Weak transcription	Skeletal Muscle Female	skeletal muscle
23	chr10:92985400-93014800	Weak transcription	Small Intestine	intestine
24	chr10:92986400-93014600	Weak transcription	Fetal Intestine Small	intestine
25	chr10:92987200-93012000	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
26	chr10:92987600-93007200	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
27	chr10:92987600-93007200	Weak transcription	K562	blood
28	chr10:92987600-93007600	Weak transcription	Primary T cells fromperipheralblood	blood
29	chr10:92987600-93012000	Weak transcription	Adipose Nuclei	Adipose
30	chr10:92987600-93012200	Weak transcription	Fetal Kidney	kidney
31	chr10:92987600-93014800	Weak transcription	Gastric	stomach
32	chr10:92987800-93007400	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
33	chr10:92987800-93007400	Weak transcription	Liver	Liver
34	chr10:92987800-93011200	Weak transcription	Fetal Lung	lung
35	chr10:92988000-93014600	Weak transcription	Fetal Muscle Trunk	muscle
36	chr10:92988200-93012800	Weak transcription	Primary hematopoietic stem cells short term culture	blood
37	chr10:92988400-93011800	Weak transcription	Rectal Mucosa Donor 31	rectum
38	chr10:92991400-93014600	Weak transcription	Lung	lung
39	chr10:92994400-93014800	Weak transcription	Pancreas	Pancrea
40	chr10:92998400-93013200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
41	chr10:92999200-93025800	Weak transcription	Stomach Mucosa	stomach
42	chr10:93000200-93007400	Weak transcription	Brain Angular Gyrus	brain
43	chr10:93000800-93007400	Weak transcription	NH-A	brain
44	chr10:93001400-93011200	Genic enhancers	Dnd41	blood
45	chr10:93001400-93044600	Weak transcription	Esophagus	oesophagus
46	chr10:93001600-93009600	Weak transcription	HSMM	muscle
47	chr10:93001800-93006600	Weak transcription	Brain Inferior Temporal Lobe	brain
48	chr10:93001800-93008200	Enhancers	Primary T helper cells PMA-I stimulated	--
49	chr10:93002000-93007400	Weak transcription	Thymus	Thymus
50	chr10:93002000-93007600	Weak transcription	Left Ventricle	heart

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