Variant report

Variant	rs7894133
Chromosome Location	chr10:92979176-92979177
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	POLR2A	chr10:92978947-92981430	HepG2	liver:	n/a	n/a
2	BHLHE40	chr10:92978784-92979393	K562	blood:	n/a	n/a
3	CUX1	chr10:92978942-92980288	K562	blood:	n/a	n/a
4	HEY1	chr10:92979150-92980695	HepG2	liver:	n/a	n/a
5	MYBL2	chr10:92979099-92980679	HepG2	liver:	n/a	n/a
6	ARID3A	chr10:92978993-92980628	HepG2	liver:	n/a	n/a

Variant related genes	Relation type
PCGF5	TF binding region

Extended variants
information (count: 92 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:92)

rs_ID	r²[population]
rs10047356	1.00[GIH][hapmap];0.86[TSI][hapmap];0.85[YRI][hapmap];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10160027	0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10509624	0.85[YRI][hapmap];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1057971	1.00[GIH][hapmap];0.86[TSI][hapmap];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11186513	0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11186514	1.00[GIH][hapmap];0.86[TSI][hapmap];0.82[YRI][hapmap];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11186518	0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11186519	0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11186522	0.85[YRI][hapmap];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11186524	0.85[YRI][hapmap];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11186525	0.85[YRI][hapmap];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11186526	0.85[YRI][hapmap];0.93[EUR][1000 genomes]
rs12241146	0.85[YRI][hapmap];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12241950	1.00[GIH][hapmap];0.86[TSI][hapmap];0.86[YRI][hapmap];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12242548	0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12244459	0.85[YRI][hapmap];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12249713	0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12251037	0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12253484	0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12253956	0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12263099	1.00[GIH][hapmap];0.86[TSI][hapmap];0.85[YRI][hapmap];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12264238	0.88[YRI][hapmap];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12266301	0.86[YRI][hapmap];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12267158	0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12268373	0.85[YRI][hapmap];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12763224	0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12764630	0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12768356	1.00[GIH][hapmap];0.86[TSI][hapmap];0.82[YRI][hapmap];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12774904	0.86[TSI][hapmap];0.97[EUR][1000 genomes]
rs12775958	0.89[YRI][hapmap];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12785046	0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs14611	0.86[YRI][hapmap];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28459398	0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28661426	0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34328644	0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34663905	0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34771310	0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35112413	0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35222869	0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35552285	0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35609498	0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35818406	0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35832595	0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35843976	0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35848051	0.93[EUR][1000 genomes]
rs35981490	0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35984384	0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4278434	0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4451623	0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56693041	0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61279719	0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6583759	0.87[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs6583761	0.82[AFR][1000 genomes];0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs66464812	0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs66518918	0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs66530003	0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs66538532	0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs66727333	0.93[EUR][1000 genomes]
rs67319671	0.86[EUR][1000 genomes]
rs67769460	0.86[EUR][1000 genomes]
rs68172749	0.93[EUR][1000 genomes]
rs7068527	0.84[YRI][hapmap];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7070119	0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7070498	1.00[GIH][hapmap];0.86[TSI][hapmap];0.86[YRI][hapmap];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7071503	1.00[GIH][hapmap];0.86[TSI][hapmap];0.85[YRI][hapmap];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7074612	1.00[GIH][hapmap];0.85[TSI][hapmap];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7075114	1.00[GIH][hapmap];0.86[TSI][hapmap];0.85[YRI][hapmap];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7080584	0.86[YRI][hapmap];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7082510	1.00[GIH][hapmap];0.86[TSI][hapmap];0.89[YRI][hapmap];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7084314	1.00[GIH][hapmap];0.86[TSI][hapmap];0.85[YRI][hapmap];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7085732	0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7085807	0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7090340	0.88[YRI][hapmap];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7090907	0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7099079	0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7896934	0.86[YRI][hapmap];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7897104	1.00[GIH][hapmap];0.86[TSI][hapmap];0.85[YRI][hapmap];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7900499	0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7900890	0.93[EUR][1000 genomes]
rs7903610	1.00[GIH][hapmap];0.86[TSI][hapmap];0.85[YRI][hapmap];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7905513	0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7911817	0.89[YRI][hapmap];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7912140	0.85[YRI][hapmap];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7912950	0.85[YRI][hapmap];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7915050	0.91[YRI][hapmap];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7915347	0.85[YRI][hapmap];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7917134	0.82[YRI][hapmap];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7919961	1.00[GIH][hapmap];0.86[TSI][hapmap];0.85[YRI][hapmap];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7920860	0.86[YRI][hapmap];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7921621	0.85[YRI][hapmap];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9651430	0.82[YRI][hapmap];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9651432	0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]

No data

Chromatin state (count:53 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:92959200-92979200	Weak transcription	NHLF	lung
2	chr10:92959400-92979800	Weak transcription	Esophagus	oesophagus
3	chr10:92966600-92980000	Weak transcription	Ovary	ovary
4	chr10:92968400-92979600	Weak transcription	Brain Anterior Caudate	brain
5	chr10:92970400-92979800	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
6	chr10:92970400-92979800	Weak transcription	Psoas Muscle	Psoas
7	chr10:92970600-92979200	Weak transcription	Skeletal Muscle Female	skeletal muscle
8	chr10:92970600-92979600	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
9	chr10:92970600-92979800	Weak transcription	Thymus	Thymus
10	chr10:92970800-92979600	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
11	chr10:92971800-92979600	Weak transcription	Brain Inferior Temporal Lobe	brain
12	chr10:92971800-92979800	Weak transcription	Left Ventricle	heart
13	chr10:92971800-92979800	Weak transcription	Right Atrium	heart
14	chr10:92971800-92979800	Weak transcription	Right Ventricle	heart
15	chr10:92972000-92979600	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
16	chr10:92972200-92979200	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
17	chr10:92972200-92979600	Weak transcription	Brain Substantia Nigra	brain
18	chr10:92972600-92979200	Weak transcription	Primary T killer memory cells from peripheral blood	blood
19	chr10:92975200-92979600	Weak transcription	GM12878-XiMat	blood
20	chr10:92975400-92979800	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
21	chr10:92976200-92979400	Weak transcription	Fetal Heart	heart
22	chr10:92976200-92979800	Weak transcription	Aorta	Aorta
23	chr10:92976200-92979800	Weak transcription	Sigmoid Colon	Sigmoid Colon
24	chr10:92976200-92980000	Weak transcription	Small Intestine	intestine
25	chr10:92976400-92979400	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
26	chr10:92976400-92979600	Weak transcription	Brain Angular Gyrus	brain
27	chr10:92976400-92979600	Weak transcription	Brain Cingulate Gyrus	brain
28	chr10:92976600-92979600	Weak transcription	Primary B cells from cord blood	blood
29	chr10:92976600-92979600	Weak transcription	Primary B cells from peripheral blood	blood
30	chr10:92976600-92979600	Weak transcription	Brain Hippocampus Middle	brain
31	chr10:92977400-92979200	Enhancers	K562	blood
32	chr10:92978200-92979600	Enhancers	Fetal Intestine Large	intestine
33	chr10:92978200-92979600	Enhancers	Fetal Intestine Small	intestine
34	chr10:92978400-92979800	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
35	chr10:92978600-92979600	Enhancers	Liver	Liver
36	chr10:92978600-92979800	Enhancers	Breast Myoepithelial Primary Cells	Breast
37	chr10:92978600-92979800	Flanking Active TSS	HepG2	liver
38	chr10:92978800-92979400	Enhancers	Pancreatic Islets	Pancreatic Islet
39	chr10:92978800-92979600	Enhancers	Primary T helper cells PMA-I stimulated	--
40	chr10:92978800-92979600	Enhancers	Dnd41	blood
41	chr10:92978800-92979800	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
42	chr10:92978800-92979800	Enhancers	Primary T helper cells fromperipheralblood	blood
43	chr10:92978800-92979800	Enhancers	Muscle Satellite Cultured Cells	--
44	chr10:92978800-92979800	Enhancers	Rectal Mucosa Donor 31	rectum
45	chr10:92978800-92979800	Enhancers	NHDF-Ad	bronchial
46	chr10:92978800-92979800	Enhancers	Osteobl	bone
47	chr10:92979000-92979200	Enhancers	Duodenum Mucosa	Duodenum
48	chr10:92979000-92979800	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
49	chr10:92979000-92979800	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
50	chr10:92979000-92979800	Enhancers	Primary T helper naive cells fromperipheralblood	blood

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