Variant report

Variant	rs14611
Chromosome Location	chr10:93043929-93043930
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr10:93041753..93044578-chr10:93048490..93051175,2	MCF-7	breast:
2	chr10:93036564..93038289-chr10:93041515..93044339,2	K562	blood:

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-HECTD2-3	chr10:93041765-93044015	NONHSAT015626

Extended variants
information (count: 93 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:93)

rs_ID	r²[population]
rs10047356	1.00[CEU][hapmap];0.93[YRI][hapmap];0.86[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10160027	0.89[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10509624	1.00[CEU][hapmap];0.93[YRI][hapmap];0.86[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1057971	1.00[CEU][hapmap];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11186513	0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11186514	1.00[CEU][hapmap];0.89[YRI][hapmap];0.81[AFR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11186518	1.00[CEU][hapmap];0.86[AFR][1000 genomes];0.85[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11186519	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11186522	1.00[CEU][hapmap];0.93[YRI][hapmap];0.87[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11186524	1.00[CEU][hapmap];0.93[YRI][hapmap];0.89[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11186525	1.00[CEU][hapmap];0.93[YRI][hapmap];0.89[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11186526	1.00[CEU][hapmap];0.93[YRI][hapmap];0.89[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12241146	1.00[CEU][hapmap];0.93[YRI][hapmap];0.86[AFR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12241950	1.00[CEU][hapmap];1.00[YRI][hapmap];0.90[AFR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12242548	1.00[CEU][hapmap];0.94[AFR][1000 genomes];0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12244459	1.00[CEU][hapmap];0.81[YRI][hapmap];0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12249713	0.82[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12251037	0.90[AFR][1000 genomes];0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12253484	0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12253956	0.86[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12263099	1.00[CEU][hapmap];0.93[YRI][hapmap];0.86[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12264238	1.00[CEU][hapmap];0.92[YRI][hapmap];0.86[AFR][1000 genomes];0.85[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12266301	1.00[CEU][hapmap];1.00[YRI][hapmap];0.86[AFR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12267158	1.00[CEU][hapmap];0.86[AFR][1000 genomes];0.85[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12267225	1.00[CEU][hapmap];0.81[AFR][1000 genomes];0.85[AMR][1000 genomes]
rs12268373	1.00[CEU][hapmap];0.93[YRI][hapmap];0.86[AFR][1000 genomes];0.85[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12763224	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12764630	0.89[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12768356	1.00[CEU][hapmap];0.89[YRI][hapmap];0.81[AFR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12774904	1.00[CEU][hapmap];0.95[EUR][1000 genomes]
rs12775958	1.00[CEU][hapmap];0.90[YRI][hapmap];0.86[AFR][1000 genomes];0.85[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12785046	0.84[AFR][1000 genomes];0.90[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28459398	0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28661426	0.86[AFR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34328644	0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34663905	0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34771310	0.86[AFR][1000 genomes];0.85[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35112413	0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35222869	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35552285	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35609498	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35818406	0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35832595	0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35843976	0.86[AFR][1000 genomes];0.85[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35848051	1.00[EUR][1000 genomes]
rs35981490	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35984384	0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4278434	0.86[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4451623	0.86[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56693041	0.89[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61279719	0.89[AFR][1000 genomes];0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6583759	1.00[ASN][1000 genomes]
rs6583761	0.80[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs66464812	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs66518918	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs66530003	0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs66538532	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs66727333	1.00[EUR][1000 genomes]
rs67319671	0.93[EUR][1000 genomes]
rs67769460	0.93[EUR][1000 genomes]
rs68172749	1.00[EUR][1000 genomes]
rs7068527	1.00[CEU][hapmap];0.86[YRI][hapmap];0.85[AFR][1000 genomes];0.85[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7070119	0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7070498	1.00[CEU][hapmap];1.00[YRI][hapmap];0.90[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7071503	1.00[CEU][hapmap];0.93[YRI][hapmap];0.81[AFR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7074612	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7075114	1.00[CEU][hapmap];0.93[YRI][hapmap];0.91[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7080584	1.00[CEU][hapmap];1.00[YRI][hapmap];0.88[AFR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7082510	1.00[CEU][hapmap];0.96[YRI][hapmap];0.86[AFR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7084314	1.00[CEU][hapmap];0.93[YRI][hapmap];0.86[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7085732	0.95[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7085807	0.86[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7090340	1.00[CEU][hapmap];1.00[YRI][hapmap];0.90[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7090907	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7099079	0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7894133	0.86[YRI][hapmap];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7896934	1.00[CEU][hapmap];1.00[YRI][hapmap];0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7897104	1.00[CEU][hapmap];0.93[YRI][hapmap];0.85[AFR][1000 genomes];0.85[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7900499	0.86[AFR][1000 genomes];0.85[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7900890	0.86[AFR][1000 genomes];0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7903610	1.00[CEU][hapmap];0.93[YRI][hapmap];0.84[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7905513	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7911817	1.00[CEU][hapmap];0.96[YRI][hapmap];0.89[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7912140	1.00[CEU][hapmap];0.93[YRI][hapmap];0.89[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7912950	1.00[CEU][hapmap];1.00[YRI][hapmap];0.90[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7915050	1.00[CEU][hapmap];0.89[YRI][hapmap];0.85[AFR][1000 genomes];0.85[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7915347	1.00[CEU][hapmap];0.93[YRI][hapmap];0.89[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7917134	1.00[CEU][hapmap];0.90[YRI][hapmap];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7919961	1.00[CEU][hapmap];0.93[YRI][hapmap];0.89[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7920860	1.00[CEU][hapmap];1.00[YRI][hapmap];0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7921621	1.00[CEU][hapmap];0.93[YRI][hapmap];0.86[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9651430	0.82[CEU][hapmap];0.89[YRI][hapmap];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9651432	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]

No data

Chromatin state (count:82 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:93001400-93044600	Weak transcription	Esophagus	oesophagus
2	chr10:93008200-93046800	Weak transcription	Psoas Muscle	Psoas
3	chr10:93015200-93044200	Weak transcription	Fetal Stomach	stomach
4	chr10:93015200-93044400	Weak transcription	Aorta	Aorta
5	chr10:93015200-93046200	Weak transcription	Gastric	stomach
6	chr10:93015400-93044400	Weak transcription	Ovary	ovary
7	chr10:93015400-93044600	Weak transcription	Right Ventricle	heart
8	chr10:93015400-93045000	Weak transcription	Placenta	Placenta
9	chr10:93015400-93045800	Weak transcription	Spleen	Spleen
10	chr10:93015400-93047600	Weak transcription	Brain Inferior Temporal Lobe	brain
11	chr10:93015400-93047600	Weak transcription	Pancreas	Pancrea
12	chr10:93015400-93049000	Weak transcription	Pancreatic Islets	Pancreatic Islet
13	chr10:93015400-93057800	Weak transcription	Brain Cingulate Gyrus	brain
14	chr10:93015600-93046400	Weak transcription	HSMMtube	muscle
15	chr10:93015600-93058200	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
16	chr10:93016200-93047400	Weak transcription	Fetal Muscle Leg	muscle
17	chr10:93016600-93056200	Weak transcription	Primary hematopoietic stem cells short term culture	blood
18	chr10:93020800-93045000	Strong transcription	Dnd41	blood
19	chr10:93023000-93045000	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
20	chr10:93027000-93047200	Weak transcription	HMEC	breast
21	chr10:93031600-93044400	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
22	chr10:93032000-93044400	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
23	chr10:93032200-93046600	Weak transcription	Muscle Satellite Cultured Cells	--
24	chr10:93032400-93046800	Weak transcription	NHLF	lung
25	chr10:93032600-93044600	Weak transcription	Fetal Intestine Small	intestine
26	chr10:93033200-93046800	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
27	chr10:93033400-93046600	Weak transcription	Skeletal Muscle Male	skeletal muscle
28	chr10:93035800-93044400	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
29	chr10:93038400-93044200	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
30	chr10:93038400-93044600	Weak transcription	Lung	lung
31	chr10:93038400-93046400	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
32	chr10:93038400-93047200	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
33	chr10:93038400-93047400	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
34	chr10:93038400-93047600	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
35	chr10:93038400-93049200	Weak transcription	Fetal Kidney	kidney
36	chr10:93038800-93044200	Weak transcription	Primary T cells from cord blood	blood
37	chr10:93038800-93044400	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
38	chr10:93038800-93044400	Weak transcription	Fetal Thymus	thymus
39	chr10:93038800-93044400	Weak transcription	Rectal Smooth Muscle	rectum
40	chr10:93038800-93044400	Weak transcription	Thymus	Thymus
41	chr10:93038800-93044600	Weak transcription	Duodenum Smooth Muscle	Duodenum
42	chr10:93038800-93044600	Weak transcription	Left Ventricle	heart
43	chr10:93038800-93046400	Weak transcription	Osteobl	bone
44	chr10:93038800-93046600	Weak transcription	Sigmoid Colon	Sigmoid Colon
45	chr10:93038800-93046600	Weak transcription	HSMM	muscle
46	chr10:93038800-93046600	Weak transcription	NHDF-Ad	bronchial
47	chr10:93038800-93046800	Weak transcription	Fetal Intestine Large	intestine
48	chr10:93038800-93048600	Weak transcription	Primary T cells fromperipheralblood	blood
49	chr10:93039000-93044200	Weak transcription	Stomach Smooth Muscle	stomach
50	chr10:93039000-93044400	Weak transcription	Brain Substantia Nigra	brain

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