Variant report

Variant	rs12768356
Chromosome Location	chr10:92982238-92982239
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr10:92980850..92982890-chr10:92989943..92991554,2	MCF-7	breast:
2	chr10:92980687..92983885-chr10:92987198..92989687,3	K562	blood:
3	chr10:92981534..92983577-chr10:92987352..92989585,2	MCF-7	breast:

Extended variants
information (count: 93 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:93)

rs_ID	r²[population]
rs10047356	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[GIH][hapmap];0.91[LWK][hapmap];1.00[MEX][hapmap];0.86[MKK][hapmap];1.00[TSI][hapmap];0.96[YRI][hapmap];0.89[AFR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10160027	0.87[AFR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10509624	1.00[CEU][hapmap];0.96[YRI][hapmap];0.89[AFR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1057971	0.84[ASW][hapmap];1.00[CEU][hapmap];0.88[GIH][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11186513	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11186514	0.92[ASW][hapmap];1.00[CEU][hapmap];1.00[GIH][hapmap];0.86[LWK][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.92[YRI][hapmap];0.85[AFR][1000 genomes];0.81[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11186518	1.00[CEU][hapmap];0.88[AFR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11186519	0.86[AFR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11186522	1.00[CEU][hapmap];0.96[YRI][hapmap];0.89[AFR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11186524	1.00[CEU][hapmap];0.96[YRI][hapmap];0.87[AFR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11186525	1.00[CEU][hapmap];0.96[YRI][hapmap];0.87[AFR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11186526	1.00[CEU][hapmap];0.96[YRI][hapmap];0.87[AFR][1000 genomes];0.95[EUR][1000 genomes]
rs12241146	1.00[CEU][hapmap];0.96[YRI][hapmap];0.87[AFR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12241950	0.91[ASW][hapmap];1.00[CEU][hapmap];1.00[GIH][hapmap];0.81[LWK][hapmap];1.00[MEX][hapmap];0.82[MKK][hapmap];1.00[TSI][hapmap];0.89[YRI][hapmap];0.86[AFR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12242548	1.00[CEU][hapmap];0.84[AFR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12244459	1.00[ASW][hapmap];1.00[CEU][hapmap];0.84[LWK][hapmap];0.83[MKK][hapmap];0.86[AFR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12249713	0.86[AFR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12251037	0.87[AFR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12253484	0.89[AFR][1000 genomes];0.86[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12253956	0.89[AFR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12263099	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[GIH][hapmap];0.91[LWK][hapmap];1.00[MEX][hapmap];0.84[MKK][hapmap];1.00[TSI][hapmap];0.96[YRI][hapmap];0.89[AFR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12264238	1.00[CEU][hapmap];0.96[YRI][hapmap];0.88[AFR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12266301	1.00[CEU][hapmap];0.89[YRI][hapmap];0.85[AFR][1000 genomes];0.81[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12267158	1.00[CEU][hapmap];0.88[AFR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12267225	1.00[CEU][hapmap]
rs12268373	1.00[CEU][hapmap];0.96[YRI][hapmap];0.88[AFR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12763224	0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12764630	0.87[AFR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12774904	1.00[CEU][hapmap];1.00[TSI][hapmap];1.00[EUR][1000 genomes]
rs12775958	1.00[CEU][hapmap];0.93[YRI][hapmap];0.88[AFR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12785046	0.81[AFR][1000 genomes];0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs14611	1.00[CEU][hapmap];0.89[YRI][hapmap];0.81[AFR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28459398	0.89[AFR][1000 genomes];0.86[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28661426	0.85[AFR][1000 genomes];0.85[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34328644	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34663905	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34771310	0.88[AFR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35112413	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35222869	0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35552285	0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35609498	0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35818406	0.88[AFR][1000 genomes];0.86[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35832595	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35843976	0.88[AFR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35848051	0.95[EUR][1000 genomes]
rs35981490	0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35984384	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4278434	0.89[AFR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4451623	0.89[AFR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56693041	0.87[AFR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61279719	0.87[AFR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6583759	1.00[MEX][hapmap];0.84[TSI][hapmap];1.00[ASN][1000 genomes]
rs6583761	0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs66464812	0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs66518918	0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs66530003	0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs66538532	0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs66727333	0.95[EUR][1000 genomes]
rs67319671	0.88[EUR][1000 genomes]
rs67769460	0.88[EUR][1000 genomes]
rs68172749	0.95[EUR][1000 genomes]
rs7068527	1.00[CEU][hapmap];0.92[YRI][hapmap];0.86[AFR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7070119	0.82[AFR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7070498	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[GIH][hapmap];0.88[LWK][hapmap];1.00[MEX][hapmap];0.84[MKK][hapmap];1.00[TSI][hapmap];0.89[YRI][hapmap];0.86[AFR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7071503	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[GIH][hapmap];0.91[LWK][hapmap];1.00[MEX][hapmap];0.95[MKK][hapmap];1.00[TSI][hapmap];0.96[YRI][hapmap];0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7074612	1.00[GIH][hapmap];1.00[TSI][hapmap];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7075114	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[GIH][hapmap];0.91[LWK][hapmap];1.00[MEX][hapmap];0.85[MKK][hapmap];1.00[TSI][hapmap];0.96[YRI][hapmap];0.86[AFR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7080584	1.00[CEU][hapmap];0.89[YRI][hapmap];0.90[AFR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7082510	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[GIH][hapmap];0.93[LWK][hapmap];1.00[MEX][hapmap];0.95[MKK][hapmap];1.00[TSI][hapmap];0.93[YRI][hapmap];0.86[AFR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7084314	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[GIH][hapmap];0.91[LWK][hapmap];1.00[MEX][hapmap];0.85[MKK][hapmap];1.00[TSI][hapmap];0.96[YRI][hapmap];0.87[AFR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7085732	0.83[AFR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7085807	0.89[AFR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7090340	1.00[CEU][hapmap];0.87[YRI][hapmap];0.86[AFR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7090907	0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7099079	0.89[AFR][1000 genomes];0.86[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7894133	1.00[GIH][hapmap];0.86[TSI][hapmap];0.82[YRI][hapmap];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7896934	1.00[CEU][hapmap];0.89[YRI][hapmap];0.82[AFR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7897104	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[GIH][hapmap];0.93[LWK][hapmap];1.00[MEX][hapmap];0.95[MKK][hapmap];1.00[TSI][hapmap];0.96[YRI][hapmap];0.88[AFR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7900499	0.90[AFR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7900890	0.90[AFR][1000 genomes];0.95[EUR][1000 genomes]
rs7903610	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[GIH][hapmap];0.91[LWK][hapmap];1.00[MEX][hapmap];0.85[MKK][hapmap];1.00[TSI][hapmap];0.96[YRI][hapmap];0.87[AFR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7905513	0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7911817	1.00[CEU][hapmap];0.96[YRI][hapmap];0.87[AFR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7912140	1.00[CEU][hapmap];0.96[YRI][hapmap];0.87[AFR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7912950	1.00[CEU][hapmap];0.89[YRI][hapmap];0.86[AFR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7915050	1.00[CEU][hapmap];1.00[YRI][hapmap];0.86[AFR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7915347	1.00[CEU][hapmap];0.96[YRI][hapmap];0.87[AFR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7917134	1.00[CEU][hapmap];0.93[YRI][hapmap];0.90[AFR][1000 genomes];0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7919961	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[GIH][hapmap];0.91[LWK][hapmap];1.00[MEX][hapmap];0.85[MKK][hapmap];1.00[TSI][hapmap];0.96[YRI][hapmap];0.87[AFR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7920860	1.00[CEU][hapmap];0.89[YRI][hapmap];0.86[AFR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7921621	1.00[CEU][hapmap];0.96[YRI][hapmap];0.89[AFR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9651430	1.00[CEU][hapmap];0.92[YRI][hapmap];0.89[AFR][1000 genomes];0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9651432	0.85[AFR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]

No data

Chromatin state (count:103 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:92980000-92984200	Active TSS	Right Ventricle	heart
2	chr10:92981000-92982400	Flanking Active TSS	H9 Derived Neuron Cultured Cells	ES cell derived
3	chr10:92981000-92987800	Transcr. at gene 5' and 3'	Dnd41	blood
4	chr10:92981400-92982400	Enhancers	Primary monocytes fromperipheralblood	blood
5	chr10:92981400-92982400	Active TSS	Psoas Muscle	Psoas
6	chr10:92981400-92982400	Weak transcription	Small Intestine	intestine
7	chr10:92981400-92982600	Enhancers	Esophagus	oesophagus
8	chr10:92981400-92982600	Enhancers	Skeletal Muscle Male	skeletal muscle
9	chr10:92981400-92982600	Enhancers	Spleen	Spleen
10	chr10:92981400-92982800	Enhancers	Primary T killer memory cells from peripheral blood	blood
11	chr10:92981400-92982800	Enhancers	Brain Dorsolateral Prefrontal Cortex	brain
12	chr10:92981400-92982800	Enhancers	Colon Smooth Muscle	Colon
13	chr10:92981400-92982800	Enhancers	Gastric	stomach
14	chr10:92981400-92983200	Enhancers	Sigmoid Colon	Sigmoid Colon
15	chr10:92981400-92983400	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
16	chr10:92981400-92983400	Enhancers	Primary T cells effector/memory enriched fromperipheralblood	blood
17	chr10:92981400-92983800	Enhancers	Brain Angular Gyrus	brain
18	chr10:92981400-92984200	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
19	chr10:92981400-92985400	Enhancers	Brain Inferior Temporal Lobe	brain
20	chr10:92981400-92986400	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
21	chr10:92981400-92986400	Enhancers	Brain Substantia Nigra	brain
22	chr10:92981400-92986400	Weak transcription	Fetal Muscle Trunk	muscle
23	chr10:92981400-92989000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
24	chr10:92981400-92997800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
25	chr10:92981400-92998000	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
26	chr10:92981400-93013000	Weak transcription	Ovary	ovary
27	chr10:92981400-93031000	Weak transcription	Colonic Mucosa	Colon
28	chr10:92981600-92982400	Enhancers	Stomach Mucosa	stomach
29	chr10:92981600-92982600	Enhancers	Liver	Liver
30	chr10:92981600-92982800	Flanking Active TSS	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
31	chr10:92981600-92982800	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
32	chr10:92981600-92982800	Flanking Active TSS	Duodenum Mucosa	Duodenum
33	chr10:92981600-92983000	Active TSS	Osteobl	bone
34	chr10:92981600-92984600	Weak transcription	Primary neutrophils fromperipheralblood	blood
35	chr10:92981600-92984600	Enhancers	Primary T cells from cord blood	blood
36	chr10:92981600-92985400	Enhancers	Primary T helper naive cells fromperipheralblood	blood
37	chr10:92981600-92988600	Weak transcription	NHEK	skin
38	chr10:92981800-92982400	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
39	chr10:92981800-92982400	Active TSS	HepG2	liver
40	chr10:92981800-92982400	Weak transcription	HSMM	muscle
41	chr10:92981800-92982600	Enhancers	Primary hematopoietic stem cells	blood
42	chr10:92981800-92982600	Enhancers	Adipose Nuclei	Adipose
43	chr10:92981800-92982600	Enhancers	Brain Cingulate Gyrus	brain
44	chr10:92981800-92982800	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
45	chr10:92981800-92982800	Enhancers	Brain Germinal Matrix	brain
46	chr10:92981800-92982800	Enhancers	Fetal Adrenal Gland	Adrenal Gland
47	chr10:92981800-92982800	Enhancers	Stomach Smooth Muscle	stomach
48	chr10:92981800-92982800	Enhancers	Thymus	Thymus
49	chr10:92981800-92983000	Weak transcription	Fetal Muscle Leg	muscle
50	chr10:92981800-92983200	Enhancers	Primary T helper cells PMA-I stimulated	--

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