Variant report

Variant	rs7090340
Chromosome Location	chr10:93018772-93018773
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr10:93016219..93018931-chr10:93026991..93028933,2	MCF-7	breast:

Extended variants
information (count: 93 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:93)

rs_ID	r²[population]
rs10047356	1.00[CEU][hapmap];0.92[YRI][hapmap];0.95[AFR][1000 genomes];0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10160027	0.91[AFR][1000 genomes];0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10509624	1.00[CEU][hapmap];0.92[YRI][hapmap];0.95[AFR][1000 genomes];0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1057971	1.00[CEU][hapmap];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11186513	0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11186514	1.00[CEU][hapmap];0.87[YRI][hapmap];0.82[AFR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11186518	1.00[CEU][hapmap];0.94[AFR][1000 genomes];0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11186519	1.00[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11186522	1.00[CEU][hapmap];0.92[YRI][hapmap];0.93[AFR][1000 genomes];0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11186524	1.00[CEU][hapmap];0.92[YRI][hapmap];0.91[AFR][1000 genomes];0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11186525	1.00[CEU][hapmap];0.92[YRI][hapmap];0.91[AFR][1000 genomes];0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11186526	1.00[CEU][hapmap];0.92[YRI][hapmap];0.91[AFR][1000 genomes];0.90[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12241146	1.00[CEU][hapmap];0.92[YRI][hapmap];0.90[AFR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12241950	1.00[CEU][hapmap];1.00[YRI][hapmap];0.91[AFR][1000 genomes];0.80[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12242548	1.00[CEU][hapmap];0.95[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12244459	1.00[CEU][hapmap];1.00[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12249713	0.91[AFR][1000 genomes];0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12251037	0.98[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12253484	0.85[AFR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12253956	0.95[AFR][1000 genomes];0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12263099	1.00[CEU][hapmap];0.92[YRI][hapmap];0.95[AFR][1000 genomes];0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12264238	1.00[CEU][hapmap];0.95[YRI][hapmap];0.94[AFR][1000 genomes];0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12266301	1.00[CEU][hapmap];1.00[YRI][hapmap];0.87[AFR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12267158	1.00[CEU][hapmap];0.94[AFR][1000 genomes];0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12267225	1.00[CEU][hapmap];0.82[AFR][1000 genomes];0.90[AMR][1000 genomes]
rs12268373	1.00[CEU][hapmap];0.92[YRI][hapmap];0.94[AFR][1000 genomes];0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12763224	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12764630	0.91[AFR][1000 genomes];0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12768356	1.00[CEU][hapmap];0.87[YRI][hapmap];0.86[AFR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12774904	1.00[CEU][hapmap];0.95[EUR][1000 genomes]
rs12775958	1.00[CEU][hapmap];0.92[YRI][hapmap];0.94[AFR][1000 genomes];0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12785046	0.87[AFR][1000 genomes];0.95[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs14611	1.00[CEU][hapmap];1.00[YRI][hapmap];0.90[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28459398	0.85[AFR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28661426	0.87[AFR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34328644	0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34663905	0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34771310	0.94[AFR][1000 genomes];0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35112413	0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35222869	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35552285	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35609498	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35818406	0.85[AFR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35832595	0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35843976	0.94[AFR][1000 genomes];0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35848051	1.00[EUR][1000 genomes]
rs35981490	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35984384	0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4278434	0.95[AFR][1000 genomes];0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4451623	0.95[AFR][1000 genomes];0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56693041	0.91[AFR][1000 genomes];0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61279719	0.91[AFR][1000 genomes];0.90[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6583759	1.00[ASN][1000 genomes]
rs6583761	0.80[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs66464812	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs66518918	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs66530003	0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs66538532	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs66727333	1.00[EUR][1000 genomes]
rs67319671	0.93[EUR][1000 genomes]
rs67769460	0.93[EUR][1000 genomes]
rs68172749	1.00[EUR][1000 genomes]
rs7068527	1.00[CEU][hapmap];0.87[YRI][hapmap];0.92[AFR][1000 genomes];0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7070119	0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7070498	1.00[CEU][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7071503	1.00[CEU][hapmap];0.92[YRI][hapmap];0.85[AFR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7074612	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7075114	1.00[CEU][hapmap];0.92[YRI][hapmap];0.90[AFR][1000 genomes];0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7080584	1.00[CEU][hapmap];1.00[YRI][hapmap];0.89[AFR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7082510	1.00[CEU][hapmap];0.96[YRI][hapmap];0.91[AFR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7084314	1.00[CEU][hapmap];0.92[YRI][hapmap];0.95[AFR][1000 genomes];0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7085732	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7085807	0.95[AFR][1000 genomes];0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7090907	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7099079	0.85[AFR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7894133	0.88[YRI][hapmap];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7896934	1.00[CEU][hapmap];1.00[YRI][hapmap];0.93[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7897104	1.00[CEU][hapmap];0.92[YRI][hapmap];0.92[AFR][1000 genomes];0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7900499	0.94[AFR][1000 genomes];0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7900890	0.94[AFR][1000 genomes];0.90[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7903610	1.00[CEU][hapmap];0.92[YRI][hapmap];0.93[AFR][1000 genomes];0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7905513	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7911817	1.00[CEU][hapmap];0.96[YRI][hapmap];0.91[AFR][1000 genomes];0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7912140	1.00[CEU][hapmap];0.92[YRI][hapmap];0.91[AFR][1000 genomes];0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7912950	1.00[CEU][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7915050	1.00[CEU][hapmap];0.91[YRI][hapmap];0.92[AFR][1000 genomes];0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7915347	1.00[CEU][hapmap];0.92[YRI][hapmap];0.91[AFR][1000 genomes];0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7917134	1.00[CEU][hapmap];0.88[YRI][hapmap];0.85[AFR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7919961	1.00[CEU][hapmap];0.92[YRI][hapmap];0.91[AFR][1000 genomes];0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7920860	1.00[CEU][hapmap];1.00[YRI][hapmap];0.99[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7921621	1.00[CEU][hapmap];0.92[YRI][hapmap];0.95[AFR][1000 genomes];0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9651430	0.87[YRI][hapmap];0.85[AFR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9651432	0.94[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]

No data

Chromatin state (count:99 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:92981400-93031000	Weak transcription	Colonic Mucosa	Colon
2	chr10:92981800-93021600	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
3	chr10:92982600-93043800	Weak transcription	Fetal Brain Male	brain
4	chr10:92982800-93039800	Weak transcription	Hela-S3	cervix
5	chr10:92999200-93025800	Weak transcription	Stomach Mucosa	stomach
6	chr10:93001400-93044600	Weak transcription	Esophagus	oesophagus
7	chr10:93006400-93032800	Weak transcription	Colon Smooth Muscle	Colon
8	chr10:93008200-93046800	Weak transcription	Psoas Muscle	Psoas
9	chr10:93008600-93019200	Strong transcription	Monocytes-CD14+_RO01746	blood
10	chr10:93009400-93019200	Strong transcription	Primary T helper cells PMA-I stimulated	--
11	chr10:93009600-93020600	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
12	chr10:93010200-93031400	Weak transcription	Brain Angular Gyrus	brain
13	chr10:93011000-93019000	Strong transcription	Primary T cells fromperipheralblood	blood
14	chr10:93011000-93019200	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
15	chr10:93011200-93018800	Strong transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
16	chr10:93011400-93019200	Strong transcription	Primary T helper cells fromperipheralblood	blood
17	chr10:93015200-93019200	Strong transcription	Primary B cells from peripheral blood	blood
18	chr10:93015200-93038000	Weak transcription	Rectal Smooth Muscle	rectum
19	chr10:93015200-93044200	Weak transcription	Fetal Stomach	stomach
20	chr10:93015200-93044400	Weak transcription	Aorta	Aorta
21	chr10:93015200-93046200	Weak transcription	Gastric	stomach
22	chr10:93015400-93018800	Strong transcription	Primary B cells from cord blood	blood
23	chr10:93015400-93019000	Weak transcription	Thymus	Thymus
24	chr10:93015400-93019200	Strong transcription	A549	lung
25	chr10:93015400-93019200	Strong transcription	Dnd41	blood
26	chr10:93015400-93019200	Weak transcription	K562	blood
27	chr10:93015400-93020800	Weak transcription	HSMM	muscle
28	chr10:93015400-93021800	Weak transcription	Small Intestine	intestine
29	chr10:93015400-93023400	Weak transcription	Brain Substantia Nigra	brain
30	chr10:93015400-93023600	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
31	chr10:93015400-93024400	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
32	chr10:93015400-93024400	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
33	chr10:93015400-93029800	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
34	chr10:93015400-93031200	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
35	chr10:93015400-93031200	Weak transcription	Fetal Intestine Small	intestine
36	chr10:93015400-93031400	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
37	chr10:93015400-93031400	Weak transcription	Skeletal Muscle Male	skeletal muscle
38	chr10:93015400-93037600	Weak transcription	Primary neutrophils fromperipheralblood	blood
39	chr10:93015400-93037600	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
40	chr10:93015400-93037600	Weak transcription	Lung	lung
41	chr10:93015400-93038000	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
42	chr10:93015400-93038000	Weak transcription	Fetal Kidney	kidney
43	chr10:93015400-93039600	Weak transcription	Primary T helper naive cells from peripheral blood	blood
44	chr10:93015400-93044400	Weak transcription	Ovary	ovary
45	chr10:93015400-93044600	Weak transcription	Right Ventricle	heart
46	chr10:93015400-93045000	Weak transcription	Placenta	Placenta
47	chr10:93015400-93045800	Weak transcription	Spleen	Spleen
48	chr10:93015400-93047600	Weak transcription	Brain Inferior Temporal Lobe	brain
49	chr10:93015400-93047600	Weak transcription	Pancreas	Pancrea
50	chr10:93015400-93049000	Weak transcription	Pancreatic Islets	Pancreatic Islet

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