Variant report

Variant	rs7900890
Chromosome Location	chr10:93015718-93015719
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr10:93008530..93010564-chr10:93013750..93016531,2	K562	blood:

Extended variants
information (count: 92 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:92)

rs_ID	r²[population]
rs10047356	0.99[AFR][1000 genomes];0.90[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10160027	0.94[AFR][1000 genomes];0.90[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10509624	0.99[AFR][1000 genomes];0.81[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1057971	0.95[EUR][1000 genomes]
rs11186513	0.95[EUR][1000 genomes]
rs11186514	0.85[AFR][1000 genomes];0.95[EUR][1000 genomes]
rs11186518	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11186519	0.94[AFR][1000 genomes];0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11186522	0.96[AFR][1000 genomes];0.90[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11186524	0.94[AFR][1000 genomes];0.90[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11186525	0.94[AFR][1000 genomes];0.90[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11186526	0.94[AFR][1000 genomes];0.90[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12241146	0.94[AFR][1000 genomes];0.95[EUR][1000 genomes]
rs12241950	0.87[AFR][1000 genomes];0.81[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs12242548	0.92[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12244459	0.94[AFR][1000 genomes];0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12249713	0.96[AFR][1000 genomes];0.81[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12251037	0.96[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12253484	0.89[AFR][1000 genomes];0.95[EUR][1000 genomes]
rs12253956	0.99[AFR][1000 genomes];0.81[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12263099	0.99[AFR][1000 genomes];0.90[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12264238	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12266301	0.83[AFR][1000 genomes];0.95[EUR][1000 genomes]
rs12267158	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12267225	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12268373	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12763224	1.00[EUR][1000 genomes]
rs12764630	0.94[AFR][1000 genomes];0.81[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12768356	0.90[AFR][1000 genomes];0.95[EUR][1000 genomes]
rs12774904	0.95[EUR][1000 genomes]
rs12775958	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12785046	0.86[AFR][1000 genomes];0.95[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs14611	0.86[AFR][1000 genomes];0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs28459398	0.89[AFR][1000 genomes];0.95[EUR][1000 genomes]
rs28661426	0.83[AFR][1000 genomes];0.95[EUR][1000 genomes]
rs34328644	0.95[EUR][1000 genomes]
rs34663905	0.95[EUR][1000 genomes]
rs34771310	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs35112413	0.95[EUR][1000 genomes]
rs35222869	1.00[EUR][1000 genomes]
rs35552285	1.00[EUR][1000 genomes]
rs35609498	1.00[EUR][1000 genomes]
rs35818406	0.88[AFR][1000 genomes];0.95[EUR][1000 genomes]
rs35832595	0.95[EUR][1000 genomes]
rs35843976	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs35848051	1.00[EUR][1000 genomes]
rs35981490	1.00[EUR][1000 genomes]
rs35984384	0.95[EUR][1000 genomes]
rs4278434	0.99[AFR][1000 genomes];0.81[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs4451623	0.99[AFR][1000 genomes];0.81[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs56693041	0.94[AFR][1000 genomes];0.90[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs61279719	0.94[AFR][1000 genomes];0.90[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs6583761	0.80[EUR][1000 genomes]
rs66464812	1.00[EUR][1000 genomes]
rs66518918	1.00[EUR][1000 genomes]
rs66530003	0.93[EUR][1000 genomes]
rs66538532	1.00[EUR][1000 genomes]
rs66727333	1.00[EUR][1000 genomes]
rs67319671	0.93[EUR][1000 genomes]
rs67769460	0.93[EUR][1000 genomes]
rs68172749	1.00[EUR][1000 genomes]
rs7068527	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7070119	0.82[AFR][1000 genomes];0.95[EUR][1000 genomes]
rs7070498	0.94[AFR][1000 genomes];0.90[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7071503	0.87[AFR][1000 genomes];0.95[EUR][1000 genomes]
rs7074612	1.00[EUR][1000 genomes]
rs7075114	0.92[AFR][1000 genomes];0.81[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7080584	0.85[AFR][1000 genomes];0.95[EUR][1000 genomes]
rs7082510	0.93[AFR][1000 genomes];0.95[EUR][1000 genomes]
rs7084314	0.97[AFR][1000 genomes];0.90[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7085732	0.91[AFR][1000 genomes];0.90[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7085807	0.99[AFR][1000 genomes];0.81[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7090340	0.94[AFR][1000 genomes];0.90[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7090907	1.00[EUR][1000 genomes]
rs7099079	0.89[AFR][1000 genomes];0.95[EUR][1000 genomes]
rs7894133	0.93[EUR][1000 genomes]
rs7896934	0.87[AFR][1000 genomes];0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7897104	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7900499	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7903610	0.97[AFR][1000 genomes];0.90[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7905513	1.00[EUR][1000 genomes]
rs7911817	0.94[AFR][1000 genomes];0.90[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7912140	0.94[AFR][1000 genomes];0.90[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7912950	0.94[AFR][1000 genomes];0.90[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7915050	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7915347	0.94[AFR][1000 genomes];0.90[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7917134	0.90[AFR][1000 genomes];0.95[EUR][1000 genomes]
rs7919961	0.94[AFR][1000 genomes];0.90[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7920860	0.95[AFR][1000 genomes];0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7921621	0.99[AFR][1000 genomes];0.90[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9651430	0.89[AFR][1000 genomes];0.95[EUR][1000 genomes]
rs9651432	0.90[AFR][1000 genomes];0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]

No data

Chromatin state (count:101 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:92981400-93031000	Weak transcription	Colonic Mucosa	Colon
2	chr10:92981800-93021600	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
3	chr10:92982600-93043800	Weak transcription	Fetal Brain Male	brain
4	chr10:92982800-93039800	Weak transcription	Hela-S3	cervix
5	chr10:92999200-93025800	Weak transcription	Stomach Mucosa	stomach
6	chr10:93001400-93044600	Weak transcription	Esophagus	oesophagus
7	chr10:93006400-93032800	Weak transcription	Colon Smooth Muscle	Colon
8	chr10:93007800-93016600	Strong transcription	Fetal Thymus	thymus
9	chr10:93008200-93046800	Weak transcription	Psoas Muscle	Psoas
10	chr10:93008600-93019200	Strong transcription	Monocytes-CD14+_RO01746	blood
11	chr10:93009400-93019200	Strong transcription	Primary T helper cells PMA-I stimulated	--
12	chr10:93009600-93020600	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
13	chr10:93010200-93031400	Weak transcription	Brain Angular Gyrus	brain
14	chr10:93011000-93019000	Strong transcription	Primary T cells fromperipheralblood	blood
15	chr10:93011000-93019200	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
16	chr10:93011200-93016600	Strong transcription	Osteobl	bone
17	chr10:93011200-93018800	Strong transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
18	chr10:93011400-93016000	Strong transcription	Liver	Liver
19	chr10:93011400-93019200	Strong transcription	Primary T helper cells fromperipheralblood	blood
20	chr10:93011800-93015800	Strong transcription	Primary monocytes fromperipheralblood	blood
21	chr10:93011800-93016000	Strong transcription	Duodenum Mucosa	Duodenum
22	chr10:93012000-93016000	Strong transcription	Primary T killer memory cells from peripheral blood	blood
23	chr10:93012000-93016600	Strong transcription	Primary T helper 17 cells PMA-I stimulated	--
24	chr10:93012200-93017800	Strong transcription	Primary T helper naive cells fromperipheralblood	blood
25	chr10:93012200-93018000	Strong transcription	Duodenum Smooth Muscle	Duodenum
26	chr10:93012400-93016000	Strong transcription	Fetal Intestine Large	intestine
27	chr10:93012400-93016600	Strong transcription	Skeletal Muscle Female	skeletal muscle
28	chr10:93012800-93016200	Strong transcription	NHDF-Ad	bronchial
29	chr10:93013600-93017200	ZNF genes & repeats	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
30	chr10:93014200-93015800	ZNF genes & repeats	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
31	chr10:93014200-93016000	ZNF genes & repeats	Primary hematopoietic stem cells G-CSF-mobilized Female	--
32	chr10:93014200-93016600	ZNF genes & repeats	Primary hematopoietic stem cells G-CSF-mobilized Male	--
33	chr10:93014400-93015800	ZNF genes & repeats	GM12878-XiMat	blood
34	chr10:93014600-93016000	Strong transcription	Muscle Satellite Cultured Cells	--
35	chr10:93014600-93016600	ZNF genes & repeats	Breast Myoepithelial Primary Cells	Breast
36	chr10:93014800-93015800	Strong transcription	Fetal Adrenal Gland	Adrenal Gland
37	chr10:93015000-93015800	ZNF genes & repeats	H9 Derived Neuron Cultured Cells	ES cell derived
38	chr10:93015000-93016200	ZNF genes & repeats	Fetal Muscle Leg	muscle
39	chr10:93015000-93018000	Weak transcription	HUVEC	blood vessel
40	chr10:93015200-93019200	Strong transcription	Primary B cells from peripheral blood	blood
41	chr10:93015200-93038000	Weak transcription	Rectal Smooth Muscle	rectum
42	chr10:93015200-93044200	Weak transcription	Fetal Stomach	stomach
43	chr10:93015200-93044400	Weak transcription	Aorta	Aorta
44	chr10:93015200-93046200	Weak transcription	Gastric	stomach
45	chr10:93015400-93016000	Strong transcription	Foreskin Melanocyte Primary Cells skin03	Skin
46	chr10:93015400-93016000	Strong transcription	Adipose Nuclei	Adipose
47	chr10:93015400-93016400	Weak transcription	Left Ventricle	heart
48	chr10:93015400-93017000	Weak transcription	Sigmoid Colon	Sigmoid Colon
49	chr10:93015400-93017200	Weak transcription	NH-A	brain
50	chr10:93015400-93017600	Weak transcription	Fetal Heart	heart

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