Variant report

Variant	rs12775958
Chromosome Location	chr10:93013117-93013118
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 93 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:93)

rs_ID	r²[population]
rs10047356	1.00[CEU][hapmap];0.96[YRI][hapmap];0.97[AFR][1000 genomes];0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10160027	0.96[AFR][1000 genomes];0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10509624	1.00[CEU][hapmap];0.97[YRI][hapmap];0.97[AFR][1000 genomes];0.81[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1057971	1.00[CEU][hapmap];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11186513	0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11186514	1.00[CEU][hapmap];0.93[YRI][hapmap];0.86[AFR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11186518	1.00[CEU][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11186519	0.94[AFR][1000 genomes];0.85[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11186522	1.00[CEU][hapmap];0.97[YRI][hapmap];0.97[AFR][1000 genomes];0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11186524	1.00[CEU][hapmap];0.96[YRI][hapmap];0.96[AFR][1000 genomes];0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11186525	1.00[CEU][hapmap];0.96[YRI][hapmap];0.96[AFR][1000 genomes];0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11186526	1.00[CEU][hapmap];0.97[YRI][hapmap];0.96[AFR][1000 genomes];0.90[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12241146	1.00[CEU][hapmap];0.97[YRI][hapmap];0.96[AFR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12241950	1.00[CEU][hapmap];0.89[YRI][hapmap];0.87[AFR][1000 genomes];0.81[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12242548	1.00[CEU][hapmap];0.92[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12244459	1.00[CEU][hapmap];0.94[AFR][1000 genomes];0.85[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12249713	0.94[AFR][1000 genomes];0.81[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12251037	0.96[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12253484	0.91[AFR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12253956	0.97[AFR][1000 genomes];0.81[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12263099	1.00[CEU][hapmap];0.96[YRI][hapmap];0.97[AFR][1000 genomes];0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12264238	1.00[CEU][hapmap];0.96[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12266301	1.00[CEU][hapmap];0.90[YRI][hapmap];0.83[AFR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12267158	1.00[CEU][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12267225	1.00[CEU][hapmap];0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12268373	1.00[CEU][hapmap];0.97[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12763224	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12764630	0.92[AFR][1000 genomes];0.81[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12768356	1.00[CEU][hapmap];0.93[YRI][hapmap];0.88[AFR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12774904	1.00[CEU][hapmap];0.95[EUR][1000 genomes]
rs12785046	0.86[AFR][1000 genomes];0.95[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs14611	1.00[CEU][hapmap];0.90[YRI][hapmap];0.86[AFR][1000 genomes];0.85[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28459398	0.91[AFR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28661426	0.83[AFR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34328644	0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34663905	0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34771310	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35112413	0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35222869	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35552285	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35609498	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35818406	0.90[AFR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35832595	0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35843976	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35848051	1.00[EUR][1000 genomes]
rs35981490	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35984384	0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4278434	0.97[AFR][1000 genomes];0.81[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4451623	0.97[AFR][1000 genomes];0.81[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56693041	0.96[AFR][1000 genomes];0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61279719	0.96[AFR][1000 genomes];0.90[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6583759	1.00[ASN][1000 genomes]
rs6583761	0.80[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs66464812	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs66518918	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs66530003	0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs66538532	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs66727333	1.00[EUR][1000 genomes]
rs67319671	0.93[EUR][1000 genomes]
rs67769460	0.93[EUR][1000 genomes]
rs68172749	1.00[EUR][1000 genomes]
rs7068527	1.00[CEU][hapmap];0.89[YRI][hapmap];0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7070119	0.84[AFR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7070498	1.00[CEU][hapmap];0.89[YRI][hapmap];0.94[AFR][1000 genomes];0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7071503	1.00[CEU][hapmap];0.96[YRI][hapmap];0.86[AFR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7074612	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7075114	1.00[CEU][hapmap];0.96[YRI][hapmap];0.91[AFR][1000 genomes];0.81[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7080584	1.00[CEU][hapmap];0.90[YRI][hapmap];0.85[AFR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7082510	1.00[CEU][hapmap];0.93[YRI][hapmap];0.95[AFR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7084314	1.00[CEU][hapmap];0.96[YRI][hapmap];0.99[AFR][1000 genomes];0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7085732	0.91[AFR][1000 genomes];0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7085807	0.97[AFR][1000 genomes];0.81[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7090340	1.00[CEU][hapmap];0.92[YRI][hapmap];0.94[AFR][1000 genomes];0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7090907	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7099079	0.91[AFR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7894133	0.89[YRI][hapmap];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7896934	1.00[CEU][hapmap];0.90[YRI][hapmap];0.87[AFR][1000 genomes];0.85[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7897104	1.00[CEU][hapmap];0.96[YRI][hapmap];0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7900499	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7900890	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7903610	1.00[CEU][hapmap];0.96[YRI][hapmap];0.96[AFR][1000 genomes];0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7905513	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7911817	1.00[CEU][hapmap];0.96[YRI][hapmap];0.96[AFR][1000 genomes];0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7912140	1.00[CEU][hapmap];0.97[YRI][hapmap];0.96[AFR][1000 genomes];0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7912950	1.00[CEU][hapmap];0.90[YRI][hapmap];0.94[AFR][1000 genomes];0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7915050	1.00[CEU][hapmap];0.92[YRI][hapmap];0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7915347	1.00[CEU][hapmap];0.97[YRI][hapmap];0.96[AFR][1000 genomes];0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7917134	1.00[CEU][hapmap];0.93[YRI][hapmap];0.91[AFR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7919961	1.00[CEU][hapmap];0.96[YRI][hapmap];0.96[AFR][1000 genomes];0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7920860	1.00[CEU][hapmap];0.90[YRI][hapmap];0.95[AFR][1000 genomes];0.85[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7921621	1.00[CEU][hapmap];0.97[YRI][hapmap];0.97[AFR][1000 genomes];0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9651430	0.82[CEU][hapmap];0.93[YRI][hapmap];0.91[AFR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9651432	0.91[AFR][1000 genomes];0.85[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]

No data

Chromatin state (count:103 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:92981400-93031000	Weak transcription	Colonic Mucosa	Colon
2	chr10:92981800-93013200	Weak transcription	Placenta	Placenta
3	chr10:92981800-93013400	Weak transcription	Fetal Stomach	stomach
4	chr10:92981800-93014600	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
5	chr10:92981800-93021600	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
6	chr10:92982200-93015400	Weak transcription	NHLF	lung
7	chr10:92982600-93014800	Weak transcription	Spleen	Spleen
8	chr10:92982600-93043800	Weak transcription	Fetal Brain Male	brain
9	chr10:92982800-93039800	Weak transcription	Hela-S3	cervix
10	chr10:92983800-93013200	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
11	chr10:92984000-93013600	Weak transcription	Primary hematopoietic stem cells	blood
12	chr10:92984200-93013400	Weak transcription	Fetal Muscle Leg	muscle
13	chr10:92985400-93014800	Weak transcription	Small Intestine	intestine
14	chr10:92986400-93014600	Weak transcription	Fetal Intestine Small	intestine
15	chr10:92987600-93014800	Weak transcription	Gastric	stomach
16	chr10:92988000-93014600	Weak transcription	Fetal Muscle Trunk	muscle
17	chr10:92991400-93014600	Weak transcription	Lung	lung
18	chr10:92994400-93014800	Weak transcription	Pancreas	Pancrea
19	chr10:92998400-93013200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
20	chr10:92999200-93025800	Weak transcription	Stomach Mucosa	stomach
21	chr10:93001400-93044600	Weak transcription	Esophagus	oesophagus
22	chr10:93005600-93014600	Weak transcription	HSMMtube	muscle
23	chr10:93005600-93015000	Weak transcription	Aorta	Aorta
24	chr10:93006200-93014600	Weak transcription	Pancreatic Islets	Pancreatic Islet
25	chr10:93006400-93032800	Weak transcription	Colon Smooth Muscle	Colon
26	chr10:93007800-93016600	Strong transcription	Fetal Thymus	thymus
27	chr10:93008000-93013200	Weak transcription	K562	blood
28	chr10:93008000-93014600	Weak transcription	Right Ventricle	heart
29	chr10:93008000-93014800	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
30	chr10:93008200-93013600	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
31	chr10:93008200-93014600	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
32	chr10:93008200-93014600	Weak transcription	Fetal Brain Female	brain
33	chr10:93008200-93014800	Weak transcription	Brain Anterior Caudate	brain
34	chr10:93008200-93046800	Weak transcription	Psoas Muscle	Psoas
35	chr10:93008400-93014600	Weak transcription	Muscle Satellite Cultured Cells	--
36	chr10:93008600-93019200	Strong transcription	Monocytes-CD14+_RO01746	blood
37	chr10:93009400-93019200	Strong transcription	Primary T helper cells PMA-I stimulated	--
38	chr10:93009600-93014800	Strong transcription	Primary B cells from peripheral blood	blood
39	chr10:93009600-93020600	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
40	chr10:93009800-93015600	Strong transcription	HepG2	liver
41	chr10:93010200-93031400	Weak transcription	Brain Angular Gyrus	brain
42	chr10:93010400-93014200	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
43	chr10:93010400-93015000	Weak transcription	HSMM	muscle
44	chr10:93010800-93014400	Weak transcription	Brain Germinal Matrix	brain
45	chr10:93010800-93014600	Strong transcription	Breast Myoepithelial Primary Cells	Breast
46	chr10:93010800-93015000	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
47	chr10:93011000-93014800	Strong transcription	Primary T killer naive cells fromperipheralblood	blood
48	chr10:93011000-93019000	Strong transcription	Primary T cells fromperipheralblood	blood
49	chr10:93011000-93019200	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
50	chr10:93011200-93013800	Strong transcription	Dnd41	blood

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