Variant report

Variant	rs1057971
Chromosome Location	chr10:92987510-92987511
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr10:92982268..92988506-chr10:92989847..92994719,9	K562	blood:
2	chr10:92981534..92983577-chr10:92987352..92989585,2	MCF-7	breast:
3	chr10:92975363..92977866-chr10:92986517..92988361,2	K562	blood:
4	chr10:92985452..92987695-chr10:92987994..92989883,2	MCF-7	breast:
5	chr10:92977964..92983885-chr10:92984075..92989186,9	K562	blood:
6	chr10:92980687..92983885-chr10:92987198..92989687,3	K562	blood:
7	chr10:92986478..92988468-chr10:92989847..92991864,3	K562	blood:

Variant related genes	Relation type
ENSG00000180628	Chromatin interaction

Extended variants
information (count: 95 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:95)

rs_ID	r²[population]
rs10047356	0.84[ASW][hapmap];1.00[CEU][hapmap];0.88[GIH][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10160027	0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10509624	1.00[CEU][hapmap];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11186513	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11186514	1.00[CEU][hapmap];0.88[GIH][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.85[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11186518	1.00[CEU][hapmap];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11186519	0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11186522	1.00[CEU][hapmap];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11186524	1.00[CEU][hapmap];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11186525	1.00[CEU][hapmap];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11186526	1.00[CEU][hapmap];0.95[EUR][1000 genomes]
rs11186561	1.00[CHD][hapmap]
rs12241146	1.00[CEU][hapmap];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12241950	1.00[CEU][hapmap];0.88[GIH][hapmap];1.00[MEX][hapmap];0.82[MKK][hapmap];1.00[TSI][hapmap];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12242548	1.00[CEU][hapmap];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12244459	0.84[ASW][hapmap];1.00[CEU][hapmap];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12249713	0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12251037	0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12253484	0.81[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12253956	0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12263099	0.84[ASW][hapmap];1.00[CEU][hapmap];0.88[GIH][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12264238	1.00[CEU][hapmap];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12266301	1.00[CEU][hapmap];0.85[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12267158	1.00[CEU][hapmap];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12267225	1.00[CEU][hapmap]
rs12268373	1.00[CEU][hapmap];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12354425	1.00[CHD][hapmap]
rs12763224	0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12764630	0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12768356	0.84[ASW][hapmap];1.00[CEU][hapmap];0.88[GIH][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12774904	1.00[CEU][hapmap];1.00[TSI][hapmap];1.00[EUR][1000 genomes]
rs12775958	1.00[CEU][hapmap];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12785046	0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs14611	1.00[CEU][hapmap];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28459398	0.81[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28661426	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34328644	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34663905	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34771310	0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35112413	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35222869	0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35552285	0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35609498	0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35818406	0.81[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35832595	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35843976	0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35848051	0.95[EUR][1000 genomes]
rs35981490	0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35984384	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4278434	0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4451623	0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56693041	0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61279719	0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6583759	1.00[MEX][hapmap];0.84[TSI][hapmap];1.00[ASN][1000 genomes]
rs6583761	0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs66464812	0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs66518918	0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs66530003	0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs66538532	0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs66727333	0.95[EUR][1000 genomes]
rs67319671	0.88[EUR][1000 genomes]
rs67769460	0.88[EUR][1000 genomes]
rs68172749	0.95[EUR][1000 genomes]
rs7068527	1.00[CEU][hapmap];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7070119	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7070498	0.84[ASW][hapmap];1.00[CEU][hapmap];0.88[GIH][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7071503	0.84[ASW][hapmap];1.00[CEU][hapmap];0.88[GIH][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7074612	0.88[GIH][hapmap];1.00[TSI][hapmap];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7075114	0.84[ASW][hapmap];1.00[CEU][hapmap];0.88[GIH][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7080584	1.00[CEU][hapmap];0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7082510	0.84[ASW][hapmap];1.00[CEU][hapmap];0.88[GIH][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7084314	0.84[ASW][hapmap];1.00[CEU][hapmap];0.88[GIH][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7085732	0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7085807	0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7090340	1.00[CEU][hapmap];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7090907	0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7099079	0.81[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7894133	1.00[GIH][hapmap];0.86[TSI][hapmap];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7896934	1.00[CEU][hapmap];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7897104	0.84[ASW][hapmap];1.00[CEU][hapmap];0.88[GIH][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7900499	0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7900890	0.95[EUR][1000 genomes]
rs7903610	0.84[ASW][hapmap];1.00[CEU][hapmap];0.88[GIH][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7905513	0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7911817	1.00[CEU][hapmap];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7912140	1.00[CEU][hapmap];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7912950	1.00[CEU][hapmap];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7915050	1.00[CEU][hapmap];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7915347	1.00[CEU][hapmap];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7917134	1.00[CEU][hapmap];0.85[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7919961	0.84[ASW][hapmap];1.00[CEU][hapmap];0.88[GIH][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7920860	1.00[CEU][hapmap];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7921621	1.00[CEU][hapmap];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9651430	1.00[CEU][hapmap];0.85[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9651432	0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]

No data

Chromatin state (count:98 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:92981000-92987800	Transcr. at gene 5' and 3'	Dnd41	blood
2	chr10:92981400-92989000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
3	chr10:92981400-92997800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
4	chr10:92981400-92998000	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
5	chr10:92981400-93013000	Weak transcription	Ovary	ovary
6	chr10:92981400-93031000	Weak transcription	Colonic Mucosa	Colon
7	chr10:92981600-92988600	Weak transcription	NHEK	skin
8	chr10:92981800-92987600	Weak transcription	NH-A	brain
9	chr10:92981800-92998000	Weak transcription	HMEC	breast
10	chr10:92981800-93013200	Weak transcription	Placenta	Placenta
11	chr10:92981800-93013400	Weak transcription	Fetal Stomach	stomach
12	chr10:92981800-93014600	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
13	chr10:92981800-93021600	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
14	chr10:92982000-93006600	Weak transcription	HUVEC	blood vessel
15	chr10:92982200-92990800	Weak transcription	HSMMtube	muscle
16	chr10:92982200-93015400	Weak transcription	NHLF	lung
17	chr10:92982400-93001200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
18	chr10:92982600-92987600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
19	chr10:92982600-92988000	Weak transcription	Fetal Brain Female	brain
20	chr10:92982600-92988400	Weak transcription	Esophagus	oesophagus
21	chr10:92982600-92990800	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
22	chr10:92982600-93011600	Weak transcription	Rectal Mucosa Donor 29	rectum
23	chr10:92982600-93014800	Weak transcription	Spleen	Spleen
24	chr10:92982600-93043800	Weak transcription	Fetal Brain Male	brain
25	chr10:92982800-92987600	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
26	chr10:92982800-93005600	Weak transcription	Stomach Smooth Muscle	stomach
27	chr10:92982800-93012000	Weak transcription	Rectal Smooth Muscle	rectum
28	chr10:92982800-93039800	Weak transcription	Hela-S3	cervix
29	chr10:92983400-92988000	Genic enhancers	Primary T helper cells PMA-I stimulated	--
30	chr10:92983800-93013200	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
31	chr10:92984000-92988600	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
32	chr10:92984000-92989200	Strong transcription	Fetal Thymus	thymus
33	chr10:92984000-92990400	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
34	chr10:92984000-93005800	Weak transcription	Muscle Satellite Cultured Cells	--
35	chr10:92984000-93007600	Weak transcription	Psoas Muscle	Psoas
36	chr10:92984000-93007600	Weak transcription	Skeletal Muscle Male	skeletal muscle
37	chr10:92984000-93013600	Weak transcription	Primary hematopoietic stem cells	blood
38	chr10:92984200-92987600	Strong transcription	K562	blood
39	chr10:92984200-92987800	Strong transcription	Primary B cells from peripheral blood	blood
40	chr10:92984200-92989000	Strong transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
41	chr10:92984200-92995400	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
42	chr10:92984200-93004000	Weak transcription	Right Ventricle	heart
43	chr10:92984200-93013400	Weak transcription	Fetal Muscle Leg	muscle
44	chr10:92984400-93012200	Weak transcription	Duodenum Smooth Muscle	Duodenum
45	chr10:92984600-92987800	Strong transcription	Osteobl	bone
46	chr10:92984600-93007200	Weak transcription	A549	lung
47	chr10:92984800-92987800	Enhancers	Primary T helper cells fromperipheralblood	blood
48	chr10:92984800-93001200	Weak transcription	Thymus	Thymus
49	chr10:92984800-93005600	Weak transcription	Brain Anterior Caudate	brain
50	chr10:92984800-93007600	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain

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