Variant report

Variant	rs12244459
Chromosome Location	chr10:93021610-93021611
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr10:93020470..93023115-chr10:93031234..93032870,2	K562	blood:

Extended variants
information (count: 93 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:93)

rs_ID	r²[population]
rs10047356	1.00[ASW][hapmap];1.00[CEU][hapmap];0.93[LWK][hapmap];0.98[MKK][hapmap];0.81[YRI][hapmap];0.95[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10160027	0.91[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10509624	1.00[CEU][hapmap];0.81[YRI][hapmap];0.95[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1057971	0.84[ASW][hapmap];1.00[CEU][hapmap];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11186513	0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11186514	0.92[ASW][hapmap];1.00[CEU][hapmap];0.83[LWK][hapmap];0.82[AFR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11186518	1.00[CEU][hapmap];0.94[AFR][1000 genomes];0.85[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11186519	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11186522	1.00[CEU][hapmap];0.81[YRI][hapmap];0.93[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11186524	1.00[CEU][hapmap];0.81[YRI][hapmap];0.91[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11186525	1.00[CEU][hapmap];0.81[YRI][hapmap];0.91[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11186526	1.00[CEU][hapmap];0.81[YRI][hapmap];0.91[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12241146	1.00[CEU][hapmap];0.81[YRI][hapmap];0.90[AFR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12241950	0.91[ASW][hapmap];1.00[CEU][hapmap];0.83[LWK][hapmap];0.81[YRI][hapmap];0.91[AFR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12242548	1.00[CEU][hapmap];0.95[AFR][1000 genomes];0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12249713	0.91[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12251037	0.98[AFR][1000 genomes];0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12253484	0.85[AFR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12253956	0.95[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12263099	1.00[ASW][hapmap];1.00[CEU][hapmap];0.93[LWK][hapmap];0.97[MKK][hapmap];0.81[YRI][hapmap];0.95[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12264238	1.00[CEU][hapmap];0.83[YRI][hapmap];0.94[AFR][1000 genomes];0.85[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12266301	1.00[CEU][hapmap];0.81[YRI][hapmap];0.87[AFR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12267158	1.00[CEU][hapmap];0.94[AFR][1000 genomes];0.85[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12267225	1.00[CEU][hapmap];0.82[AFR][1000 genomes];0.85[AMR][1000 genomes]
rs12268373	1.00[CEU][hapmap];0.81[YRI][hapmap];0.94[AFR][1000 genomes];0.85[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12763224	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12764630	0.91[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12768356	1.00[ASW][hapmap];1.00[CEU][hapmap];0.84[LWK][hapmap];0.83[MKK][hapmap];0.86[AFR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12774904	1.00[CEU][hapmap];0.95[EUR][1000 genomes]
rs12775958	1.00[CEU][hapmap];0.94[AFR][1000 genomes];0.85[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12785046	0.87[AFR][1000 genomes];0.90[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs14611	1.00[CEU][hapmap];0.81[YRI][hapmap];0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28459398	0.85[AFR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28661426	0.87[AFR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34328644	0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34663905	0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34771310	0.94[AFR][1000 genomes];0.85[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35112413	0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35222869	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35552285	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35609498	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35818406	0.85[AFR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35832595	0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35843976	0.94[AFR][1000 genomes];0.85[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35848051	1.00[EUR][1000 genomes]
rs35981490	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35984384	0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4278434	0.95[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4451623	0.95[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56693041	0.91[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61279719	0.91[AFR][1000 genomes];0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6583759	1.00[ASN][1000 genomes]
rs6583761	0.80[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs66464812	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs66518918	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs66530003	0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs66538532	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs66727333	1.00[EUR][1000 genomes]
rs67319671	0.93[EUR][1000 genomes]
rs67769460	0.93[EUR][1000 genomes]
rs68172749	1.00[EUR][1000 genomes]
rs7068527	1.00[CEU][hapmap];0.92[AFR][1000 genomes];0.85[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7070119	0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7070498	1.00[ASW][hapmap];1.00[CEU][hapmap];0.95[LWK][hapmap];1.00[MKK][hapmap];0.81[YRI][hapmap];1.00[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7071503	1.00[ASW][hapmap];1.00[CEU][hapmap];0.85[LWK][hapmap];0.85[MKK][hapmap];0.81[YRI][hapmap];0.85[AFR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7074612	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7075114	1.00[ASW][hapmap];1.00[CEU][hapmap];0.93[LWK][hapmap];0.98[MKK][hapmap];0.81[YRI][hapmap];0.90[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7080584	1.00[CEU][hapmap];0.81[YRI][hapmap];0.89[AFR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7082510	1.00[ASW][hapmap];1.00[CEU][hapmap];0.91[LWK][hapmap];0.88[MKK][hapmap];0.91[AFR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7084314	1.00[ASW][hapmap];1.00[CEU][hapmap];0.93[LWK][hapmap];0.98[MKK][hapmap];0.81[YRI][hapmap];0.95[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7085732	0.96[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7085807	0.95[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7090340	1.00[CEU][hapmap];1.00[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7090907	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7099079	0.85[AFR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7894133	0.85[YRI][hapmap];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7896934	1.00[CEU][hapmap];0.81[YRI][hapmap];0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7897104	1.00[ASW][hapmap];1.00[CEU][hapmap];0.91[LWK][hapmap];0.88[MKK][hapmap];0.81[YRI][hapmap];0.92[AFR][1000 genomes];0.85[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7900499	0.94[AFR][1000 genomes];0.85[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7900890	0.94[AFR][1000 genomes];0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7903610	1.00[ASW][hapmap];1.00[CEU][hapmap];0.93[LWK][hapmap];0.98[MKK][hapmap];0.81[YRI][hapmap];0.93[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7905513	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7911817	1.00[CEU][hapmap];0.81[YRI][hapmap];0.91[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7912140	1.00[CEU][hapmap];0.81[YRI][hapmap];0.91[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7912950	1.00[CEU][hapmap];0.81[YRI][hapmap];1.00[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7915050	1.00[CEU][hapmap];0.83[YRI][hapmap];0.92[AFR][1000 genomes];0.85[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7915347	1.00[CEU][hapmap];0.81[YRI][hapmap];0.91[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7917134	1.00[CEU][hapmap];0.85[AFR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7919961	1.00[ASW][hapmap];1.00[CEU][hapmap];0.93[LWK][hapmap];0.98[MKK][hapmap];0.81[YRI][hapmap];0.91[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7920860	1.00[CEU][hapmap];0.81[YRI][hapmap];0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7921621	1.00[CEU][hapmap];0.81[YRI][hapmap];0.95[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9651430	0.82[CEU][hapmap];0.85[AFR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9651432	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]

No data

Chromatin state (count:96 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:92981400-93031000	Weak transcription	Colonic Mucosa	Colon
2	chr10:92982600-93043800	Weak transcription	Fetal Brain Male	brain
3	chr10:92982800-93039800	Weak transcription	Hela-S3	cervix
4	chr10:92999200-93025800	Weak transcription	Stomach Mucosa	stomach
5	chr10:93001400-93044600	Weak transcription	Esophagus	oesophagus
6	chr10:93006400-93032800	Weak transcription	Colon Smooth Muscle	Colon
7	chr10:93008200-93046800	Weak transcription	Psoas Muscle	Psoas
8	chr10:93010200-93031400	Weak transcription	Brain Angular Gyrus	brain
9	chr10:93015200-93038000	Weak transcription	Rectal Smooth Muscle	rectum
10	chr10:93015200-93044200	Weak transcription	Fetal Stomach	stomach
11	chr10:93015200-93044400	Weak transcription	Aorta	Aorta
12	chr10:93015200-93046200	Weak transcription	Gastric	stomach
13	chr10:93015400-93021800	Weak transcription	Small Intestine	intestine
14	chr10:93015400-93023400	Weak transcription	Brain Substantia Nigra	brain
15	chr10:93015400-93023600	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
16	chr10:93015400-93024400	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
17	chr10:93015400-93024400	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
18	chr10:93015400-93029800	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
19	chr10:93015400-93031200	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
20	chr10:93015400-93031200	Weak transcription	Fetal Intestine Small	intestine
21	chr10:93015400-93031400	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
22	chr10:93015400-93031400	Weak transcription	Skeletal Muscle Male	skeletal muscle
23	chr10:93015400-93037600	Weak transcription	Primary neutrophils fromperipheralblood	blood
24	chr10:93015400-93037600	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
25	chr10:93015400-93037600	Weak transcription	Lung	lung
26	chr10:93015400-93038000	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
27	chr10:93015400-93038000	Weak transcription	Fetal Kidney	kidney
28	chr10:93015400-93039600	Weak transcription	Primary T helper naive cells from peripheral blood	blood
29	chr10:93015400-93044400	Weak transcription	Ovary	ovary
30	chr10:93015400-93044600	Weak transcription	Right Ventricle	heart
31	chr10:93015400-93045000	Weak transcription	Placenta	Placenta
32	chr10:93015400-93045800	Weak transcription	Spleen	Spleen
33	chr10:93015400-93047600	Weak transcription	Brain Inferior Temporal Lobe	brain
34	chr10:93015400-93047600	Weak transcription	Pancreas	Pancrea
35	chr10:93015400-93049000	Weak transcription	Pancreatic Islets	Pancreatic Islet
36	chr10:93015400-93057800	Weak transcription	Brain Cingulate Gyrus	brain
37	chr10:93015600-93023200	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
38	chr10:93015600-93023400	Weak transcription	HepG2	liver
39	chr10:93015600-93025600	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
40	chr10:93015600-93026400	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
41	chr10:93015600-93026600	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
42	chr10:93015600-93028600	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
43	chr10:93015600-93029000	Weak transcription	Fetal Brain Female	brain
44	chr10:93015600-93031000	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
45	chr10:93015600-93031000	Weak transcription	Stomach Smooth Muscle	stomach
46	chr10:93015600-93031400	Weak transcription	Brain Anterior Caudate	brain
47	chr10:93015600-93037600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
48	chr10:93015600-93046400	Weak transcription	HSMMtube	muscle
49	chr10:93015600-93058200	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
50	chr10:93016000-93023200	Weak transcription	Adipose Nuclei	Adipose

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