Variant report

Variant	nsv825934
Chromosome Location	chr11:59224513-59225214
allele	n/a
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 62 )
Associated
traits (count: 51 )

Variant overlapped rSNPs/rCNVs (count:62 , 50 per page) page: 1 2

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	rs146438260	chr11:59224547-59224548	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
2	rs201963313	chr11:59224558-59224559	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
3	rs535162378	chr11:59224569-59224570	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
4	rs201484408	chr11:59224593-59224594	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
5	rs1453544	chr11:59224608-59224609	Weak transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	mRNA abundance
6	rs201173822	chr11:59224618-59224619	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
7	rs367617382	chr11:59224619-59224620	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
8	rs147019373	chr11:59224623-59224624	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
9	rs201750242	chr11:59224624-59224625	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
10	rs138416557	chr11:59224628-59224629	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
11	rs370136342	chr11:59224636-59224637	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
12	rs374117029	chr11:59224644-59224645	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
13	rs368089126	chr11:59224663-59224664	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
14	rs149619824	chr11:59224664-59224665	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
15	rs144983296	chr11:59224665-59224666	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
16	rs139230114	chr11:59224673-59224674	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
17	rs267603039	chr11:59224676-59224677	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
18	rs112998492	chr11:59224677-59224678	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
19	rs149091895	chr11:59224683-59224684	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
20	rs116338722	chr11:59224693-59224694	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
21	rs371983092	chr11:59224717-59224718	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
22	rs1453543	chr11:59224720-59224721	Weak transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
23	rs201554048	chr11:59224723-59224724	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
24	rs17153770	chr11:59224738-59224739	Weak transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
25	rs200659057	chr11:59224760-59224761	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
26	rs17500380	chr11:59224765-59224766	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
27	rs139749233	chr11:59224798-59224799	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
28	rs200132677	chr11:59224812-59224813	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
29	rs552488423	chr11:59224817-59224818	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
30	rs564736831	chr11:59224818-59224819	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
31	rs75344454	chr11:59224821-59224822	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
32	rs201724564	chr11:59224837-59224838	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
33	rs149723752	chr11:59224843-59224844	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
34	rs374359259	chr11:59224851-59224852	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
35	rs146734452	chr11:59224880-59224881	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
36	rs1453542	chr11:59224885-59224886	Weak transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	mRNA abundance
37	rs144170711	chr11:59224923-59224924	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
38	rs199814128	chr11:59224934-59224935	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
39	rs566579941	chr11:59224962-59224963	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
40	rs373570567	chr11:59224964-59224965	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
41	rs146503258	chr11:59224979-59224980	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
42	rs149033287	chr11:59224995-59224996	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
43	rs369844117	chr11:59225024-59225025	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
44	rs143011036	chr11:59225040-59225041	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
45	rs151172983	chr11:59225057-59225058	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
46	rs202119522	chr11:59225062-59225063	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
47	rs557643699	chr11:59225098-59225099	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
48	rs148328090	chr11:59225103-59225104	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
49	rs373730590	chr11:59225124-59225125	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
50	rs77048571	chr11:59225130-59225131	Weak transcription	n/a	n/a	Overlapped CNVs	n/a

Variant related diseases (count:51)

Disease	PMID	Source
Medulloblastoma	21979893	CNVD
Gastric cancer	17908304	CNVD
Multiple myeloma	20724749	CNVD
Wilms tumour	21544195	CNVD
Autism	22495311	CNVD
Chronic lymphocytic leukemia	21546498	CNVD
Non-small cell lung cancer	21385341	CNVD
Intellectual disability	22102821	CNVD
Glioblastoma multiforme	21138945	CNVD
Esophageal cancer	21851588	CNVD
Acute myeloid leukemia	20729466	CNVD
T-cell prolymphocytic leukemia	19278963	CNVD
Glioblastoma multiforme	22286061	CNVD
Acute lymphoblastic leukemia	20067559	CNVD
Cancer	21637783	CNVD
Acute myeloid leukemia	16864856	CNVD
Chronic lymphocytic leukemia	21795749	CNVD
Esophageal squamous carcinoma	21637470	CNVD
Neuroblastoma	21484798	CNVD
Ewing''s sarcoma	21437220	CNVD
Oral cancer	21386901	CNVD
Endometrial cancer	22040021	CNVD
Breast cancer	20837533	CNVD
Breast cancer	21264507	CNVD
Cervical cancer	21063398	CNVD
Glioblastoma multiforme	19960244	CNVD
Liposarcoma	21253554	CNVD
Neuroblastoma	18923524	CNVD
Neuroblastoma	18664255	CNVD
Monoclonal gammopathy of undetermined significance	17077331	CNVD
Multiple myeloma	17077331	CNVD
Neuroblastoma	17533364	CNVD
Breast cancer	21364760	CNVD
Acute lymphoblastic leukemia	20435627	CNVD
small cell lung cancer	20016488	CNVD
Lung cancer	18438408	CNVD
Colorectal cancer	16272173	CNVD
Esophageal squamous carcinoma	18350619	CNVD
Pituitary adenoma	18645599	CNVD
Basal cell lymphoma	16317097	CNVD
Diffuse large b-cell lymphoma	16317097	CNVD
Prostate cancer	18632612	CNVD
Myelofibrosis	22110671	CNVD
Glioblastoma multiforme	21080181	CNVD
Smith-Lemli-Opitz syndrome	21572526	CNVD
Multiple myeloma	16461302	CNVD
Cancer	16751803	CNVD
Seminomas	18059402	CNVD
Autism	22495309	CNVD
Autism	20808228	CNVD
Acute lymphoblastic leukemia	21339820	CNVD

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:59224000-59226600	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
2	chr11:59224200-59229800	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
3	chr11:59224400-59230600	Weak transcription	ES-I3 Cell Line	embryonic stem cell

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