Variant report

Variant	rs1453543
Chromosome Location	chr11:59224720-59224721
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 36 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:33)

rs_ID	r²[population]
rs10736698	0.83[ASN][1000 genomes]
rs10750920	0.83[ASN][1000 genomes]
rs10792241	0.94[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11230020	0.81[MEX][hapmap]
rs12278910	0.81[MEX][hapmap]
rs12289921	0.81[MEX][hapmap]
rs1349776	0.85[AFR][1000 genomes]
rs1377558	1.00[CHB][hapmap];1.00[JPT][hapmap];0.95[YRI][hapmap];0.93[AFR][1000 genomes];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1453545	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1453553	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.92[AFR][1000 genomes];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1522757	1.00[CHD][hapmap]
rs1530995	0.90[MEX][hapmap]
rs17153732	1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.90[MEX][hapmap]
rs17153766	1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];0.83[AMR][1000 genomes];0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17153910	0.81[MEX][hapmap]
rs17153962	0.90[MEX][hapmap]
rs1949710	0.83[ASN][1000 genomes]
rs2027773	0.83[ASN][1000 genomes]
rs2100403	0.87[AFR][1000 genomes]
rs2187530	0.85[CHD][hapmap]
rs2198452	1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.92[LWK][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.80[YRI][hapmap];0.85[AFR][1000 genomes];0.91[AMR][1000 genomes];0.89[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2213082	0.83[ASN][1000 genomes]
rs2219071	1.00[CHB][hapmap]
rs41340150	0.90[MEX][hapmap]
rs486952	0.90[MEX][hapmap]
rs495564	0.81[MEX][hapmap]
rs559150	0.90[MEX][hapmap]
rs567994	0.81[MEX][hapmap]
rs6591541	0.81[MEX][hapmap]
rs7108052	1.00[EUR][1000 genomes]
rs7120664	1.00[YRI][hapmap];0.93[AFR][1000 genomes];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs8280	0.81[MEX][hapmap]
rs9988824	0.81[AFR][1000 genomes];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1046084	chr11:59034871-59314519	Enhancers Active TSS Flanking Active TSS Weak transcription ZNF genes & repeats Bivalent Enhancer Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	24 gene(s)	inside rSNPs	diseases
2	nsv975342	chr11:59203908-59237268	Weak transcription Flanking Active TSS Enhancers ZNF genes & repeats Active TSS	TF binding region CpG island	3 gene(s)	inside rSNPs	diseases
3	nsv825934	chr11:59224513-59225214	Weak transcription	n/a	n/a	inside rSNPs	n/a

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:59224000-59226600	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
2	chr11:59224200-59229800	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
3	chr11:59224400-59230600	Weak transcription	ES-I3 Cell Line	embryonic stem cell

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