Variant report

Variant	rs1530995
Chromosome Location	chr11:59321861-59321862
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	SPI1	chr11:59321727-59322036	HL-60	blood:	n/a	chr11:59321934-59321947
2	SPI1	chr11:59321623-59322089	HL-60	blood:	n/a	chr11:59321934-59321947

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr11:59321356..59325949-chr11:59373523..59377145,4	K562	blood:
2	chr11:59313248..59321957-chr11:59433786..59439304,14	K562	blood:

Variant related genes	Relation type
RNU7-58P	TF binding region
ENSG00000255355	Chromatin interaction
ENSG00000166889	Chromatin interaction

Extended variants
information (count: 65 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:65)

rs_ID	r²[population]
rs11230020	0.91[MEX][hapmap]
rs11230037	0.90[MEX][hapmap]
rs11821465	0.91[MEX][hapmap]
rs12276505	1.00[CHB][hapmap]
rs12278910	1.00[CHB][hapmap];0.91[MEX][hapmap]
rs12289921	1.00[CHB][hapmap];0.91[MEX][hapmap]
rs12797334	1.00[CHB][hapmap]
rs1287449	0.86[AMR][1000 genomes]
rs1299800	1.00[CHB][hapmap];0.84[JPT][hapmap]
rs1453543	0.90[MEX][hapmap]
rs17153732	0.80[MEX][hapmap]
rs17153766	0.90[MEX][hapmap]
rs17153910	1.00[CHB][hapmap];0.91[MEX][hapmap]
rs17153962	1.00[ASW][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[YRI][hapmap];1.00[AMR][1000 genomes];0.87[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs17153966	1.00[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs17153982	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AMR][1000 genomes];0.87[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs17154025	1.00[JPT][hapmap];1.00[YRI][hapmap]
rs1938690	0.91[MEX][hapmap]
rs2198452	0.90[MEX][hapmap]
rs2298868	1.00[CHB][hapmap];1.00[JPT][hapmap];0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];0.87[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs2298869	1.00[CHB][hapmap];1.00[JPT][hapmap];0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];0.87[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs2509274	1.00[MEX][hapmap]
rs2509275	0.82[MEX][hapmap]
rs2924491	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];0.87[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs2924493	0.83[ASN][1000 genomes]
rs2927184	1.00[JPT][hapmap];0.86[YRI][hapmap]
rs35770960	0.95[AMR][1000 genomes];0.87[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs41340150	1.00[ASW][hapmap];0.83[CHD][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];0.89[YRI][hapmap]
rs472177	0.91[MEX][hapmap]
rs473490	1.00[CHB][hapmap]
rs473979	1.00[JPT][hapmap];0.89[YRI][hapmap]
rs475145	1.00[JPT][hapmap];1.00[YRI][hapmap]
rs486952	1.00[ASW][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[YRI][hapmap];0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];0.87[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs488331	1.00[CHB][hapmap];0.82[MEX][hapmap]
rs4939293	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs495564	1.00[CHB][hapmap];0.91[MEX][hapmap]
rs498099	1.00[MEX][hapmap]
rs499037	1.00[ASW][hapmap];0.83[CHD][hapmap];1.00[LWK][hapmap];1.00[MKK][hapmap];0.90[YRI][hapmap]
rs508411	1.00[JPT][hapmap];0.90[YRI][hapmap]
rs518026	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AMR][1000 genomes];0.87[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs519535	1.00[AMR][1000 genomes];0.87[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs520622	1.00[JPT][hapmap]
rs536544	1.00[MEX][hapmap]
rs536910	1.00[CHB][hapmap];0.85[JPT][hapmap]
rs537595	0.83[CHD][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap]
rs540684	1.00[MEX][hapmap]
rs549086	1.00[MEX][hapmap]
rs552601	1.00[MEX][hapmap]
rs553700	1.00[CHB][hapmap]
rs555251	0.84[ASW][hapmap];0.83[CHD][hapmap];1.00[JPT][hapmap];0.96[LWK][hapmap];1.00[MEX][hapmap];0.89[MKK][hapmap];0.82[YRI][hapmap]
rs558505	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];0.87[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs559150	1.00[ASW][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];0.95[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[YRI][hapmap];0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];0.87[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs563683	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs565482	1.00[CHB][hapmap];1.00[JPT][hapmap];0.82[AFR][1000 genomes];1.00[AMR][1000 genomes];0.87[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs567994	1.00[CHB][hapmap];0.91[MEX][hapmap]
rs577224	1.00[JPT][hapmap];0.90[YRI][hapmap]
rs579362	1.00[CHB][hapmap]
rs579373	1.00[MEX][hapmap]
rs6591541	1.00[CHB][hapmap];0.91[MEX][hapmap]
rs693110	1.00[CHB][hapmap];0.82[JPT][hapmap]
rs7116567	1.00[CHB][hapmap]
rs7124813	1.00[CHB][hapmap]
rs7939527	1.00[JPT][hapmap];0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];0.87[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs7952495	1.00[JPT][hapmap];1.00[YRI][hapmap];0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];0.87[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs8280	1.00[CHB][hapmap];0.91[MEX][hapmap]

No data

Chromatin state (count:94 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:59319000-59323200	Weak transcription	Lung	lung
2	chr11:59319000-59323200	Weak transcription	Pancreas	Pancrea
3	chr11:59319000-59323200	Weak transcription	Spleen	Spleen
4	chr11:59319000-59327800	Weak transcription	Stomach Mucosa	stomach
5	chr11:59319200-59323200	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
6	chr11:59319200-59323200	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
7	chr11:59319200-59323200	Weak transcription	Colonic Mucosa	Colon
8	chr11:59319200-59323200	Weak transcription	Left Ventricle	heart
9	chr11:59319400-59323200	Weak transcription	Primary T helper naive cells from peripheral blood	blood
10	chr11:59319400-59323400	Weak transcription	Duodenum Mucosa	Duodenum
11	chr11:59319600-59322000	Enhancers	HepG2	liver
12	chr11:59319600-59323000	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
13	chr11:59319600-59323000	Weak transcription	Primary T helper cells fromperipheralblood	blood
14	chr11:59319600-59323000	Weak transcription	Primary T killer memory cells from peripheral blood	blood
15	chr11:59319600-59323000	Weak transcription	Liver	Liver
16	chr11:59319600-59323000	Weak transcription	Psoas Muscle	Psoas
17	chr11:59319600-59323000	Weak transcription	Skeletal Muscle Male	skeletal muscle
18	chr11:59319600-59323000	Weak transcription	GM12878-XiMat	blood
19	chr11:59319600-59323200	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
20	chr11:59319600-59323200	Weak transcription	Colon Smooth Muscle	Colon
21	chr11:59319600-59323200	Weak transcription	Rectal Mucosa Donor 29	rectum
22	chr11:59319600-59323400	Weak transcription	Fetal Heart	heart
23	chr11:59319800-59322800	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
24	chr11:59319800-59322800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
25	chr11:59319800-59322800	Weak transcription	Brain Anterior Caudate	brain
26	chr11:59319800-59323000	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
27	chr11:59319800-59323000	Weak transcription	Primary T cells fromperipheralblood	blood
28	chr11:59319800-59323000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
29	chr11:59319800-59323000	Weak transcription	Cortex derived primary cultured neurospheres	brain
30	chr11:59319800-59323000	Weak transcription	Brain Angular Gyrus	brain
31	chr11:59319800-59323000	Weak transcription	Brain Hippocampus Middle	brain
32	chr11:59319800-59323000	Weak transcription	Fetal Intestine Small	intestine
33	chr11:59319800-59323000	Weak transcription	NHEK	skin
34	chr11:59319800-59323200	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
35	chr11:59319800-59323200	Weak transcription	Primary T helper cells PMA-I stimulated	--
36	chr11:59319800-59323200	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
37	chr11:59319800-59323200	Weak transcription	Right Atrium	heart
38	chr11:59319800-59323200	Weak transcription	Dnd41	blood
39	chr11:59320000-59322800	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
40	chr11:59320000-59322800	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
41	chr11:59320000-59323000	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
42	chr11:59320000-59323000	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
43	chr11:59320000-59323000	Weak transcription	Primary B cells from peripheral blood	blood
44	chr11:59320000-59323000	Weak transcription	Muscle Satellite Cultured Cells	--
45	chr11:59320000-59323000	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
46	chr11:59320000-59323000	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
47	chr11:59320000-59323000	Weak transcription	Adipose Nuclei	Adipose
48	chr11:59320000-59323000	Weak transcription	Brain Cingulate Gyrus	brain
49	chr11:59320000-59323000	Weak transcription	Brain Inferior Temporal Lobe	brain
50	chr11:59320000-59323000	Weak transcription	Fetal Lung	lung

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