Variant report

Variant	rs579362
Chromosome Location	chr11:59327533-59327534
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 154 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:154)

rs_ID	r²[population]
rs1121991	0.88[EUR][1000 genomes]
rs11230020	1.00[CEU][hapmap];1.00[JPT][hapmap];0.90[YRI][hapmap];0.82[AFR][1000 genomes];0.98[AMR][1000 genomes];0.92[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs11230027	0.86[AFR][1000 genomes];0.84[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs11230037	1.00[CEU][hapmap];1.00[JPT][hapmap];0.96[YRI][hapmap];0.92[EUR][1000 genomes]
rs1151063	1.00[CEU][hapmap];1.00[JPT][hapmap];0.80[EUR][1000 genomes]
rs1151064	1.00[CEU][hapmap];1.00[JPT][hapmap];0.80[EUR][1000 genomes]
rs11821333	0.84[EUR][1000 genomes]
rs11821465	1.00[CEU][hapmap];1.00[JPT][hapmap];0.90[YRI][hapmap];0.92[EUR][1000 genomes]
rs12271188	0.84[AFR][1000 genomes];0.98[AMR][1000 genomes];0.96[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs12272588	0.88[EUR][1000 genomes]
rs12276505	1.00[CHB][hapmap];0.86[JPT][hapmap];0.94[AMR][1000 genomes];0.85[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs12278859	0.92[EUR][1000 genomes]
rs12278910	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs12280606	0.86[CEU][hapmap];0.88[JPT][hapmap];0.96[YRI][hapmap];0.92[EUR][1000 genomes]
rs12281969	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs12285828	0.86[EUR][1000 genomes]
rs12287975	0.88[EUR][1000 genomes]
rs12289162	0.92[EUR][1000 genomes]
rs12289921	1.00[CEU][hapmap];1.00[CHB][hapmap];0.86[JPT][hapmap];0.82[YRI][hapmap];0.98[AMR][1000 genomes];0.96[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs12292682	1.00[CEU][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.88[EUR][1000 genomes]
rs12797334	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.89[YRI][hapmap];0.92[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs1287111	1.00[CEU][hapmap];1.00[JPT][hapmap];0.80[EUR][1000 genomes]
rs1287441	0.98[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1287442	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1287446	0.86[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1287448	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs1287449	0.84[AMR][1000 genomes];0.83[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs1290457	0.84[EUR][1000 genomes]
rs1290459	0.84[EUR][1000 genomes]
rs1290466	0.94[AMR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1299800	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs1530995	1.00[CHB][hapmap]
rs17046	0.84[EUR][1000 genomes]
rs17153910	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17153962	1.00[CHB][hapmap]
rs17153982	1.00[CHB][hapmap]
rs17154029	0.84[EUR][1000 genomes]
rs17154134	0.80[EUR][1000 genomes]
rs17154138	0.80[EUR][1000 genomes]
rs17154146	0.80[EUR][1000 genomes]
rs17154149	0.80[EUR][1000 genomes]
rs17154157	0.80[EUR][1000 genomes]
rs1783212	0.82[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1938690	1.00[CEU][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.92[EUR][1000 genomes]
rs2186597	0.88[EUR][1000 genomes]
rs2298868	1.00[CHB][hapmap]
rs2298869	1.00[CHB][hapmap]
rs2508335	1.00[JPT][hapmap]
rs2509274	1.00[CEU][hapmap];1.00[JPT][hapmap];0.80[EUR][1000 genomes]
rs2509275	1.00[CEU][hapmap];1.00[JPT][hapmap]
rs2509276	0.80[EUR][1000 genomes]
rs2509279	1.00[JPT][hapmap]
rs2509290	1.00[CEU][hapmap];1.00[JPT][hapmap];0.87[YRI][hapmap];0.84[EUR][1000 genomes]
rs2927183	0.84[EUR][1000 genomes]
rs3015969	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3019740	0.96[AMR][1000 genomes];0.96[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs3110322	0.84[EUR][1000 genomes]
rs3132748	0.84[EUR][1000 genomes]
rs34350918	0.92[EUR][1000 genomes]
rs3781793	0.80[EUR][1000 genomes]
rs3862660	0.80[EUR][1000 genomes]
rs41384548	0.80[EUR][1000 genomes]
rs4301803	0.88[EUR][1000 genomes]
rs4393334	1.00[CEU][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.88[EUR][1000 genomes]
rs4515985	0.88[EUR][1000 genomes]
rs472177	1.00[CEU][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.84[EUR][1000 genomes]
rs473087	0.84[EUR][1000 genomes]
rs473490	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs474844	0.84[EUR][1000 genomes]
rs475706	0.84[EUR][1000 genomes]
rs478167	0.80[EUR][1000 genomes]
rs482355	1.00[CEU][hapmap];1.00[JPT][hapmap];0.80[EUR][1000 genomes]
rs485008	0.80[EUR][1000 genomes]
rs485803	1.00[JPT][hapmap]
rs486587	0.80[EUR][1000 genomes]
rs486952	1.00[CHB][hapmap]
rs488331	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.90[YRI][hapmap];0.86[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs492652	0.84[EUR][1000 genomes]
rs4939294	0.89[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs495564	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs498099	1.00[JPT][hapmap]
rs498388	0.84[EUR][1000 genomes]
rs504016	0.80[EUR][1000 genomes]
rs507235	0.80[EUR][1000 genomes]
rs510122	0.80[EUR][1000 genomes]
rs510249	0.90[AFR][1000 genomes];0.98[AMR][1000 genomes];0.94[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs511785	0.80[EUR][1000 genomes]
rs511957	0.84[EUR][1000 genomes]
rs512194	1.00[CEU][hapmap];1.00[JPT][hapmap]
rs512695	0.80[EUR][1000 genomes]
rs513979	1.00[JPT][hapmap]
rs516912	0.80[EUR][1000 genomes]
rs518026	1.00[CHB][hapmap]
rs519605	1.00[CEU][hapmap];1.00[JPT][hapmap];0.80[EUR][1000 genomes]
rs519865	0.91[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs519873	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs521330	0.80[EUR][1000 genomes]
rs523016	0.80[EUR][1000 genomes]
rs524102	1.00[JPT][hapmap]
rs528525	0.80[EUR][1000 genomes]
rs529270	1.00[CEU][hapmap];1.00[JPT][hapmap];0.80[EUR][1000 genomes]
rs532838	0.87[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs533166	1.00[JPT][hapmap]
rs536544	1.00[JPT][hapmap]
rs536910	1.00[CHB][hapmap];1.00[YRI][hapmap];0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs537625	0.84[EUR][1000 genomes]
rs540684	1.00[CEU][hapmap];1.00[JPT][hapmap];0.84[EUR][1000 genomes]
rs549086	1.00[JPT][hapmap]
rs550189	0.84[EUR][1000 genomes]
rs550822	0.85[CEU][hapmap];1.00[JPT][hapmap];0.95[YRI][hapmap];0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs552601	1.00[CEU][hapmap];1.00[JPT][hapmap];0.84[EUR][1000 genomes]
rs553700	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.87[YRI][hapmap];0.87[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs554149	0.84[EUR][1000 genomes]
rs554848	0.80[EUR][1000 genomes]
rs555175	0.80[EUR][1000 genomes]
rs55667192	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs559150	1.00[CHB][hapmap]
rs561604	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs563276	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs565482	1.00[CHB][hapmap]
rs565983	0.80[EUR][1000 genomes]
rs567485	0.80[EUR][1000 genomes]
rs567994	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.90[YRI][hapmap];0.87[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs569326	0.80[EUR][1000 genomes]
rs573592	0.80[EUR][1000 genomes]
rs57529518	0.80[EUR][1000 genomes]
rs57871852	0.80[EUR][1000 genomes]
rs579192	0.84[EUR][1000 genomes]
rs579373	1.00[CEU][hapmap];1.00[JPT][hapmap];0.80[EUR][1000 genomes]
rs580242	0.84[EUR][1000 genomes]
rs58169611	0.80[EUR][1000 genomes]
rs58775794	0.80[EUR][1000 genomes]
rs60009036	0.80[EUR][1000 genomes]
rs60094706	0.80[EUR][1000 genomes]
rs61636608	0.80[EUR][1000 genomes]
rs6591540	0.85[EUR][1000 genomes]
rs6591541	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs693110	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7116567	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7118051	1.00[CEU][hapmap];0.84[YRI][hapmap]
rs7119778	0.80[EUR][1000 genomes]
rs7124813	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7126593	1.00[CEU][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.88[EUR][1000 genomes]
rs73486934	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs73486962	0.92[EUR][1000 genomes]
rs73486971	0.92[EUR][1000 genomes]
rs73486979	0.92[EUR][1000 genomes]
rs73486988	0.88[EUR][1000 genomes]
rs73486997	0.88[EUR][1000 genomes]
rs7941643	0.84[EUR][1000 genomes]
rs7947514	0.80[EUR][1000 genomes]
rs7952024	0.80[EUR][1000 genomes]
rs7952367	0.98[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs8280	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]

No data

Chromatin state (count:113 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:59319000-59327800	Weak transcription	Stomach Mucosa	stomach
2	chr11:59322800-59329000	Active TSS	ES-I3 Cell Line	embryonic stem cell
3	chr11:59323600-59327800	Weak transcription	Lung	lung
4	chr11:59323600-59329000	Active TSS	Brain Anterior Caudate	brain
5	chr11:59323800-59327600	Weak transcription	Aorta	Aorta
6	chr11:59323800-59327600	Weak transcription	Rectal Mucosa Donor 31	rectum
7	chr11:59323800-59327800	Weak transcription	Colonic Mucosa	Colon
8	chr11:59324000-59327800	Weak transcription	Psoas Muscle	Psoas
9	chr11:59324200-59327800	Weak transcription	Ovary	ovary
10	chr11:59324600-59327800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
11	chr11:59324600-59327800	Weak transcription	Pancreas	Pancrea
12	chr11:59324600-59328000	Weak transcription	Small Intestine	intestine
13	chr11:59325000-59327600	Enhancers	Primary B cells from peripheral blood	blood
14	chr11:59325000-59327600	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
15	chr11:59325000-59327600	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
16	chr11:59325000-59327600	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
17	chr11:59325000-59327600	Weak transcription	Primary T killer memory cells from peripheral blood	blood
18	chr11:59325000-59327600	Weak transcription	Stomach Smooth Muscle	stomach
19	chr11:59325000-59327800	Weak transcription	HSMM	muscle
20	chr11:59325000-59327800	Weak transcription	HSMMtube	muscle
21	chr11:59325000-59327800	Weak transcription	NHEK	skin
22	chr11:59325400-59327800	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
23	chr11:59325400-59327800	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
24	chr11:59325600-59327600	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
25	chr11:59325600-59327600	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
26	chr11:59325600-59327600	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
27	chr11:59325600-59327600	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
28	chr11:59325600-59327600	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
29	chr11:59325600-59327600	Weak transcription	Muscle Satellite Cultured Cells	--
30	chr11:59325600-59327600	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
31	chr11:59325600-59327600	Enhancers	Placenta	Placenta
32	chr11:59325600-59327600	Weak transcription	Rectal Mucosa Donor 29	rectum
33	chr11:59325600-59327600	Weak transcription	Skeletal Muscle Male	skeletal muscle
34	chr11:59325600-59327800	Weak transcription	NHDF-Ad	bronchial
35	chr11:59325600-59327800	Weak transcription	NHLF	lung
36	chr11:59325800-59327600	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
37	chr11:59325800-59327600	Weak transcription	Duodenum Mucosa	Duodenum
38	chr11:59325800-59327600	Weak transcription	HUVEC	blood vessel
39	chr11:59325800-59327800	Weak transcription	Left Ventricle	heart
40	chr11:59326000-59327600	Weak transcription	Adipose Nuclei	Adipose
41	chr11:59326000-59327600	Weak transcription	Fetal Intestine Large	intestine
42	chr11:59326000-59327600	Weak transcription	HMEC	breast
43	chr11:59326000-59327800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
44	chr11:59326200-59327600	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
45	chr11:59326400-59327600	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
46	chr11:59326600-59327600	Enhancers	Brain Substantia Nigra	brain
47	chr11:59326600-59327800	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
48	chr11:59326800-59327600	Enhancers	Primary B cells from cord blood	blood
49	chr11:59326800-59328600	Active TSS	Brain Cingulate Gyrus	brain
50	chr11:59327000-59327800	Bivalent Enhancer	Primary neutrophils fromperipheralblood	blood

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links