Variant report

Variant	rs486587
Chromosome Location	chr11:59521943-59521944
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	UBTF	chr11:59521459-59524064	K562	blood:	n/a	n/a
2	RAD21	chr11:59521310-59522012	HCT-116	colon:	n/a	chr11:59521600-59521619 chr11:59521605-59521615 chr11:59521603-59521616
3	E2F6	chr11:59521513-59523560	K562	blood:	n/a	chr11:59522829-59522839 chr11:59523236-59523248 chr11:59522826-59522835 chr11:59521608-59521617 chr11:59522828-59522838 chr11:59521715-59521725 chr11:59523060-59523070
4	MAX	chr11:59521399-59523549	ECC-1	luminal epithelium:	n/a	n/a
5	MAX	chr11:59521372-59523745	HepG2	liver:	n/a	n/a
6	TCF7L2	chr11:59521567-59522042	PANC-1	pancreas:	n/a	n/a
7	RAD21	chr11:59521247-59523103	SK-N-SH	brain:	n/a	chr11:59521600-59521619 chr11:59521605-59521615 chr11:59521603-59521616
8	SMC3	chr11:59521409-59522060	Hela-S3	cervix:	n/a	chr11:59521601-59521615 chr11:59521601-59521609 chr11:59521622-59521630 chr11:59521605-59521615
9	RAD21	chr11:59521353-59522092	MCF-7	breast:	n/a	chr11:59521600-59521619 chr11:59521605-59521615 chr11:59521603-59521616
10	CTCF	chr11:59521940-59522090	GM12874	blood:	n/a	n/a
11	CTCF	chr11:59520889-59523923	SK-N-SH	brain:	n/a	chr11:59521599-59521617 chr11:59521601-59521622 chr11:59521604-59521614 chr11:59521602-59521615 chr11:59521602-59521611 chr11:59521600-59521616 chr11:59521602-59521615
12	ZEB1	chr11:59521394-59523791	HepG2	liver:	n/a	n/a
13	POLR2A	chr11:59521521-59524625	HUVEC	blood vessel:	n/a	n/a
14	KAP1	chr11:59521408-59522767	HEK293	kidney:	n/a	n/a
15	CTCF	chr11:59521252-59522075	HCT-116	colon:	n/a	chr11:59521599-59521617 chr11:59521601-59521622 chr11:59521604-59521614 chr11:59521602-59521615 chr11:59521602-59521611 chr11:59521600-59521616 chr11:59521602-59521615
16	CBX3	chr11:59521296-59522730	K562	blood:	n/a	n/a
17	SMC3	chr11:59521438-59521982	K562	blood:	n/a	chr11:59521601-59521615 chr11:59521601-59521609 chr11:59521622-59521630 chr11:59521605-59521615
18	POLR2A	chr11:59521622-59524571	Hela-S3	cervix:	n/a	n/a
19	SIN3AK20	chr11:59521352-59523760	MCF-7	breast:	n/a	n/a
20	TCF12	chr11:59521384-59521949	ECC-1	luminal epithelium:	n/a	n/a
21	MAX	chr11:59521476-59522114	K562	blood:	n/a	n/a
22	RFX5	chr11:59521468-59522637	Hela-S3	cervix:	n/a	n/a
23	CTCF	chr11:59520913-59524235	A549	lung:	n/a	chr11:59521599-59521617 chr11:59521601-59521622 chr11:59521604-59521614 chr11:59521602-59521615 chr11:59521602-59521611 chr11:59521600-59521616 chr11:59521602-59521615
24	REST	chr11:59521691-59522188	A549	lung:	n/a	n/a
25	MYC	chr11:59521514-59523716	K562	blood:	n/a	n/a
26	MAX	chr11:59521468-59523870	Hela-S3	cervix:	n/a	n/a
27	TEAD4	chr11:59521409-59522699	K562	blood:	n/a	n/a
28	RAD21	chr11:59521408-59521948	MCF-7	breast:	n/a	chr11:59521600-59521619 chr11:59521605-59521615 chr11:59521603-59521616
29	MYC	chr11:59521440-59523734	NB4	blood:	n/a	n/a
30	MAX	chr11:59521469-59523792	NB4	blood:	n/a	n/a
31	ATF2	chr11:59521454-59521976	GM12878	blood:	n/a	n/a
32	ZNF263	chr11:59521484-59523076	HEK293-T-REx	kidney:	n/a	chr11:59521548-59521557
33	SMC3	chr11:59521200-59524375	SK-N-SH	brain:	n/a	chr11:59521601-59521615 chr11:59521601-59521609 chr11:59521622-59521630 chr11:59521605-59521615
34	TBL1XR1	chr11:59521503-59522588	K562	blood:	n/a	n/a
35	JUND	chr11:59521452-59522233	K562	blood:	n/a	n/a
36	MAX	chr11:59521383-59523036	HepG2	liver:	n/a	n/a
37	E2F6	chr11:59521935-59522169	K562	blood:	n/a	n/a
38	MAX	chr11:59521599-59522029	HepG2	liver:	n/a	n/a
39	RAD21	chr11:59521261-59522202	IMR90	lung:	n/a	chr11:59521600-59521619 chr11:59521605-59521615 chr11:59521603-59521616
40	MAX	chr11:59521386-59522986	SK-N-SH	brain:	n/a	n/a
41	KAP1	chr11:59521548-59522041	U2OS	brain:	n/a	n/a
42	RCOR1	chr11:59521547-59523948	K562	blood:	n/a	n/a
43	MAX	chr11:59521418-59522191	GM12878	blood:	n/a	n/a
44	ELF1	chr11:59521467-59521949	MCF-7	breast:	n/a	chr11:59521667-59521680
45	RCOR1	chr11:59521461-59524801	K562	blood:	n/a	n/a
46	BHLHE40	chr11:59521511-59523765	K562	blood:	n/a	chr11:59522833-59522849
47	MAX	chr11:59521878-59522215	K562	blood:	n/a	n/a
48	E2F6	chr11:59521399-59522329	H1-hESC	embryonic stem cell:	n/a	chr11:59521608-59521617 chr11:59521715-59521725
49	MAX	chr11:59521308-59523747	HCT-116	colon:	n/a	n/a
50	SMARCC1	chr11:59521585-59524730	Hela-S3	cervix:	n/a	n/a

No.	Distal block	Cell Line	Cell type
1	chr11:59521037..59522134-chr11:59569735..59571070,7	MCF-7	breast:
2	chr11:59521347..59522076-chr11:59577896..59578446,2	MCF-7	breast:
3	chr11:59521183..59522129-chr11:59897665..59898553,3	K562	blood:
4	chr11:59520214..59524923-chr11:59576549..59579669,4	MCF-7	breast:
5	chr11:59521605..59525070-chr11:59543036..59549785,6	MCF-7	breast:
6	chr11:59521189..59522029-chr11:59569757..59570741,3	K562	blood:
7	chr11:59480505..59482058-chr11:59521372..59523220,2	MCF-7	breast:
8	chr11:59381725..59384642-chr11:59521273..59522941,2	K562	blood:
9	chr11:59520634..59522259-chr11:59568757..59570737,15	MCF-7	breast:
10	chr1:114300956..114303148-chr11:59521456..59522999,2	MCF-7	breast:
11	chr11:59520935..59525781-chr11:59552803..59557885,8	MCF-7	breast:
12	chr11:59479954..59482315-chr11:59521677..59523287,2	K562	blood:
13	chr11:59519722..59526041-chr11:59575307..59578961,7	MCF-7	breast:
14	chr11:59520651..59522378-chr11:59577196..59579780,2	K562	blood:
15	chr11:59521565..59522093-chr11:59577744..59578503,3	K562	blood:

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-OR10V1-1	chr11:59521753-59522448	ENSG00000254477.1

Variant related genes	Relation type
STX3	TF binding region
ENSG00000110048	Chromatin interaction
ENSG00000166900	Chromatin interaction
ENSG00000234964	Chromatin interaction
ENSG00000172289	Chromatin interaction
ENSG00000116793	Chromatin interaction
ENSG00000255139	Chromatin interaction
ENSG00000166902	Chromatin interaction

Extended variants
information (count: 212 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:209)

rs_ID	r²[population]
rs10501380	0.85[EUR][1000 genomes]
rs1121991	0.92[EUR][1000 genomes]
rs11230020	0.80[EUR][1000 genomes]
rs11230027	0.80[EUR][1000 genomes]
rs11230037	0.88[EUR][1000 genomes]
rs1151063	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1151064	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11821333	0.88[AMR][1000 genomes];0.96[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs11821465	0.88[EUR][1000 genomes]
rs12272588	0.92[EUR][1000 genomes]
rs12278859	0.88[EUR][1000 genomes]
rs12278910	0.80[EUR][1000 genomes]
rs12280606	0.88[EUR][1000 genomes]
rs12285828	0.90[EUR][1000 genomes]
rs12287975	0.84[EUR][1000 genomes]
rs12289162	0.88[EUR][1000 genomes]
rs12292682	0.92[EUR][1000 genomes]
rs12797334	0.80[EUR][1000 genomes]
rs1287111	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1287441	0.80[EUR][1000 genomes]
rs1287446	0.80[EUR][1000 genomes]
rs1287448	0.80[EUR][1000 genomes]
rs1290457	0.94[AMR][1000 genomes];0.96[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs1290459	0.88[AMR][1000 genomes];0.96[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs1290460	0.80[AMR][1000 genomes]
rs1299800	0.80[EUR][1000 genomes]
rs17046	0.91[AMR][1000 genomes];0.96[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs17153910	0.80[EUR][1000 genomes]
rs17154025	0.80[AMR][1000 genomes]
rs17154029	0.84[AMR][1000 genomes];0.96[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs17154134	1.00[EUR][1000 genomes]
rs17154138	1.00[EUR][1000 genomes]
rs17154146	1.00[EUR][1000 genomes]
rs17154149	1.00[EUR][1000 genomes]
rs17154157	1.00[EUR][1000 genomes]
rs17154165	1.00[EUR][1000 genomes]
rs17154169	1.00[EUR][1000 genomes]
rs17154175	1.00[EUR][1000 genomes]
rs17154180	1.00[EUR][1000 genomes]
rs17154195	1.00[EUR][1000 genomes]
rs17154200	1.00[EUR][1000 genomes]
rs17154222	1.00[EUR][1000 genomes]
rs17154227	0.98[EUR][1000 genomes]
rs1783212	0.80[EUR][1000 genomes]
rs1938690	0.88[EUR][1000 genomes]
rs2186597	0.92[EUR][1000 genomes]
rs2447309	0.80[AMR][1000 genomes]
rs2447310	0.96[AMR][1000 genomes];0.81[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs2508335	1.00[AMR][1000 genomes];0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2508339	0.80[AMR][1000 genomes]
rs2509274	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2509275	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2509276	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2509279	0.98[AMR][1000 genomes];0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2509290	0.84[AMR][1000 genomes];0.96[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs2509730	1.00[EUR][1000 genomes]
rs2927182	0.87[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs2927183	1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2927184	0.80[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs2957223	0.89[AMR][1000 genomes];0.96[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs2957227	0.80[AMR][1000 genomes]
rs3015969	0.80[EUR][1000 genomes]
rs3110321	0.85[AMR][1000 genomes]
rs3110322	0.84[AMR][1000 genomes];0.96[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs3132748	0.88[AMR][1000 genomes];0.96[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs34350918	0.88[EUR][1000 genomes]
rs3781792	1.00[EUR][1000 genomes]
rs3781793	1.00[EUR][1000 genomes]
rs3862660	1.00[EUR][1000 genomes]
rs41384548	1.00[EUR][1000 genomes]
rs4301803	0.92[EUR][1000 genomes]
rs4356243	0.98[EUR][1000 genomes]
rs4393334	0.92[EUR][1000 genomes]
rs4515985	0.92[EUR][1000 genomes]
rs471369	0.98[AMR][1000 genomes];0.81[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs472152	0.96[AMR][1000 genomes];0.81[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs472177	0.88[AMR][1000 genomes];0.96[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs473087	0.98[AMR][1000 genomes];0.96[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs473490	0.80[EUR][1000 genomes]
rs473679	0.80[AMR][1000 genomes]
rs473979	0.80[AMR][1000 genomes]
rs474844	0.88[AMR][1000 genomes];0.96[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs475145	0.80[AMR][1000 genomes]
rs475706	0.98[AMR][1000 genomes];0.96[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs475800	0.87[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs477577	0.96[AMR][1000 genomes];0.81[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs477729	0.96[AMR][1000 genomes];0.81[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs478167	1.00[EUR][1000 genomes]
rs478924	0.80[AMR][1000 genomes]
rs479264	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes];0.85[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs481893	0.98[AMR][1000 genomes];0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs482355	0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs482356	1.00[EUR][1000 genomes]
rs484030	0.80[AFR][1000 genomes];0.87[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs484083	0.84[AFR][1000 genomes];0.82[AMR][1000 genomes]
rs484814	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes];0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs484895	1.00[EUR][1000 genomes]
rs485008	0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs485803	0.96[AMR][1000 genomes];0.81[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs487312	0.80[AMR][1000 genomes]
rs488331	0.80[EUR][1000 genomes]
rs492652	0.91[AMR][1000 genomes];0.96[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs493025	0.80[AMR][1000 genomes]
rs4939294	0.80[EUR][1000 genomes]
rs494110	0.96[AMR][1000 genomes];0.81[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs495564	0.80[EUR][1000 genomes]
rs496938	0.96[AMR][1000 genomes];0.81[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs497596	0.98[AMR][1000 genomes];0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs498099	0.96[AMR][1000 genomes];0.81[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs498165	0.80[AMR][1000 genomes]
rs498299	0.98[AMR][1000 genomes];0.81[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs498388	0.88[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs499054	0.98[AMR][1000 genomes];0.81[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs501288	0.80[AMR][1000 genomes]
rs504016	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs504320	0.80[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs506384	0.80[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs507235	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs508411	0.80[AMR][1000 genomes]
rs510122	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs511263	0.80[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs511785	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs511957	0.93[AMR][1000 genomes];0.96[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs512194	0.91[AMR][1000 genomes];0.92[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs512690	0.80[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs512695	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs513979	0.96[AMR][1000 genomes];0.81[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs516912	1.00[EUR][1000 genomes]
rs519605	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs519865	0.80[EUR][1000 genomes]
rs519873	0.80[EUR][1000 genomes]
rs521330	0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs523016	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs524102	0.96[AMR][1000 genomes];0.81[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs526672	0.96[AMR][1000 genomes];0.81[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs528525	1.00[EUR][1000 genomes]
rs529270	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs532293	0.80[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs532838	0.80[EUR][1000 genomes]
rs533166	0.98[AMR][1000 genomes];0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs536544	0.98[AMR][1000 genomes];0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs536910	0.80[EUR][1000 genomes]
rs537595	0.80[AMR][1000 genomes]
rs537625	0.96[AMR][1000 genomes];0.96[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs538169	0.98[AMR][1000 genomes];0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs540684	0.91[AMR][1000 genomes];0.96[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs540989	0.91[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs549086	1.00[AMR][1000 genomes];0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs550189	0.98[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs550449	0.80[AMR][1000 genomes]
rs550822	0.80[EUR][1000 genomes]
rs552601	0.98[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs553700	0.80[EUR][1000 genomes]
rs554149	0.88[AMR][1000 genomes];0.96[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs554460	0.80[AMR][1000 genomes]
rs554848	1.00[EUR][1000 genomes]
rs555175	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs555251	0.80[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs55667192	0.80[EUR][1000 genomes]
rs558569	0.80[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs561029	1.00[AMR][1000 genomes];0.81[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs561604	0.80[EUR][1000 genomes]
rs562657	0.98[AMR][1000 genomes];0.81[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs563267	0.98[AMR][1000 genomes];0.81[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs563276	0.80[EUR][1000 genomes]
rs563800	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes];0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs565026	0.80[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs565983	1.00[EUR][1000 genomes]
rs567253	0.80[AMR][1000 genomes]
rs567485	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs567603	1.00[EUR][1000 genomes]
rs569326	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs571451	0.80[AMR][1000 genomes]
rs573592	1.00[EUR][1000 genomes]
rs57529518	1.00[EUR][1000 genomes]
rs577224	0.80[AMR][1000 genomes]
rs577644	0.89[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs57871852	1.00[EUR][1000 genomes]
rs579192	0.88[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs579373	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs580242	0.96[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs581265	0.89[AMR][1000 genomes];0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs58169611	1.00[EUR][1000 genomes]
rs58775794	1.00[EUR][1000 genomes]
rs60009036	1.00[EUR][1000 genomes]
rs60094706	1.00[EUR][1000 genomes]
rs61636608	1.00[EUR][1000 genomes]
rs6591541	0.80[EUR][1000 genomes]
rs693110	0.80[EUR][1000 genomes]
rs7108731	0.81[EUR][1000 genomes]
rs7114773	1.00[EUR][1000 genomes]
rs7117509	0.85[EUR][1000 genomes]
rs7119778	1.00[EUR][1000 genomes]
rs7123969	0.98[EUR][1000 genomes]
rs7126593	0.92[EUR][1000 genomes]
rs7131059	1.00[EUR][1000 genomes]
rs73486962	0.88[EUR][1000 genomes]
rs73486971	0.88[EUR][1000 genomes]
rs73486979	0.88[EUR][1000 genomes]
rs73486988	0.92[EUR][1000 genomes]
rs73486997	0.92[EUR][1000 genomes]
rs7933970	0.98[EUR][1000 genomes]
rs7941643	0.88[AMR][1000 genomes];0.96[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs7946152	1.00[EUR][1000 genomes]
rs7947036	1.00[EUR][1000 genomes]
rs7947514	1.00[EUR][1000 genomes]
rs7952024	1.00[EUR][1000 genomes]
rs7952367	0.80[EUR][1000 genomes]
rs8280	0.80[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2752406	chr11:59490424-59529524	Enhancers Weak transcription Active TSS Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Strong transcription Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	15 gene(s)	inside rSNPs	n/a
2	esv2755215	chr11:59515524-59529524	Active TSS Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Strong transcription Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	n/a
3	nsv1046086	chr11:59520424-59561455	Enhancers Weak transcription Strong transcription Genic enhancers Active TSS Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:127 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:59521200-59522000	Active TSS	Rectal Smooth Muscle	rectum
2	chr11:59521200-59523600	Active TSS	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
3	chr11:59521400-59522000	Active TSS	Primary T cells from cord blood	blood
4	chr11:59521400-59522000	Active TSS	Foreskin Melanocyte Primary Cells skin03	Skin
5	chr11:59521400-59522400	Flanking Active TSS	Primary T helper 17 cells PMA-I stimulated	--
6	chr11:59521400-59522400	Flanking Active TSS	Stomach Smooth Muscle	stomach
7	chr11:59521400-59523400	Active TSS	IMR90 fetal lung fibroblasts Cell Line	lung
8	chr11:59521400-59523400	Active TSS	Brain Angular Gyrus	brain
9	chr11:59521400-59523600	Active TSS	Rectal Mucosa Donor 29	rectum
10	chr11:59521400-59523800	Active TSS	HUES6 Cell Line	embryonic stem cell
11	chr11:59521400-59524000	Active TSS	H9 Cell Line	embryonic stem cell
12	chr11:59521400-59524000	Active TSS	Foreskin Melanocyte Primary Cells skin01	Skin
13	chr11:59521400-59524000	Active TSS	Fetal Intestine Large	intestine
14	chr11:59521400-59524200	Flanking Active TSS	Primary B cells from cord blood	blood
15	chr11:59521400-59524400	Active TSS	iPS DF 6.9 Cell Line	embryonic stem cell
16	chr11:59521400-59524400	Active TSS	HSMMtube	muscle
17	chr11:59521400-59524600	Active TSS	Fetal Intestine Small	intestine
18	chr11:59521600-59522000	Active TSS	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
19	chr11:59521600-59522000	Flanking Active TSS	Primary T helper naive cells fromperipheralblood	blood
20	chr11:59521600-59522000	Flanking Active TSS	Ganglion Eminence derived primary cultured neurospheres	brain
21	chr11:59521600-59522000	Active TSS	Duodenum Mucosa	Duodenum
22	chr11:59521600-59522000	Active TSS	Fetal Adrenal Gland	Adrenal Gland
23	chr11:59521600-59522000	Active TSS	Placenta	Placenta
24	chr11:59521600-59522000	Bivalent/Poised TSS	Fetal Stomach	stomach
25	chr11:59521600-59522000	Active TSS	NH-A	brain
26	chr11:59521600-59522000	Flanking Active TSS	NHEK	skin
27	chr11:59521600-59522200	Bivalent/Poised TSS	HUES64 Cell Line	embryonic stem cell
28	chr11:59521600-59522200	Bivalent/Poised TSS	iPS-18 Cell Line	embryonic stem cell
29	chr11:59521600-59522200	Active TSS	Primary T cells effector/memory enriched fromperipheralblood	blood
30	chr11:59521600-59522400	Bivalent/Poised TSS	iPS-20b Cell Line	embryonic stem cell
31	chr11:59521600-59522400	Flanking Active TSS	Primary monocytes fromperipheralblood	blood
32	chr11:59521600-59522400	Flanking Active TSS	Primary neutrophils fromperipheralblood	blood
33	chr11:59521600-59522400	Flanking Bivalent TSS/Enh	Brain Germinal Matrix	brain
34	chr11:59521600-59522400	Flanking Active TSS	Colonic Mucosa	Colon
35	chr11:59521600-59522400	Flanking Active TSS	Rectal Mucosa Donor 31	rectum
36	chr11:59521600-59522400	Flanking Active TSS	Thymus	Thymus
37	chr11:59521600-59522400	Flanking Active TSS	GM12878-XiMat	blood
38	chr11:59521600-59522400	Flanking Active TSS	HSMM	muscle
39	chr11:59521600-59522400	Flanking Active TSS	HUVEC	blood vessel
40	chr11:59521600-59522600	Flanking Bivalent TSS/Enh	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
41	chr11:59521600-59522600	Flanking Bivalent TSS/Enh	H9 Derived Neuron Cultured Cells	ES cell derived
42	chr11:59521600-59522600	Flanking Active TSS	Primary T cells fromperipheralblood	blood
43	chr11:59521600-59522600	Flanking Active TSS	Primary hematopoietic stem cells	blood
44	chr11:59521600-59522600	Flanking Active TSS	Primary T helper cells fromperipheralblood	blood
45	chr11:59521600-59522600	Flanking Active TSS	Primary Natural Killer cells fromperipheralblood	blood
46	chr11:59521600-59522600	Flanking Bivalent TSS/Enh	Cortex derived primary cultured neurospheres	brain
47	chr11:59521600-59522600	Bivalent/Poised TSS	Fetal Brain Male	brain
48	chr11:59521600-59522600	Flanking Active TSS	Skeletal Muscle Male	skeletal muscle
49	chr11:59521600-59522600	Flanking Active TSS	Monocytes-CD14+_RO01746	blood
50	chr11:59521600-59522800	Flanking Bivalent TSS/Enh	Fetal Muscle Trunk	muscle

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