Variant report

Variant	rs12797334
Chromosome Location	chr11:59322566-59322567
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr11:59322188..59323808-chr11:59380792..59382700,2	K562	blood:
2	chr11:59321356..59325949-chr11:59373523..59377145,4	K562	blood:
3	chr11:59316717..59319546-chr11:59322343..59325398,3	MCF-7	breast:
4	chr11:59322297..59324135-chr11:59434971..59436784,3	K562	blood:

Variant related genes	Relation type
ENSG00000166889	Chromatin interaction

Extended variants
information (count: 146 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:146)

rs_ID	r²[population]
rs1121991	0.88[EUR][1000 genomes]
rs11230020	1.00[CEU][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.87[AFR][1000 genomes];0.98[AMR][1000 genomes];0.92[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs11230027	0.80[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs11230037	1.00[CEU][hapmap];1.00[JPT][hapmap];0.88[YRI][hapmap];0.92[EUR][1000 genomes]
rs1151063	0.80[EUR][1000 genomes]
rs1151064	0.80[EUR][1000 genomes]
rs11821333	0.84[EUR][1000 genomes]
rs11821465	1.00[CEU][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.92[EUR][1000 genomes]
rs12271188	0.88[AFR][1000 genomes];0.98[AMR][1000 genomes];0.96[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs12272588	0.88[EUR][1000 genomes]
rs12276505	1.00[CHB][hapmap];0.86[JPT][hapmap];0.94[AMR][1000 genomes];0.85[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs12278859	0.92[EUR][1000 genomes]
rs12278910	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.92[YRI][hapmap];0.87[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs12280606	0.82[CEU][hapmap];0.88[JPT][hapmap];0.87[YRI][hapmap];0.92[EUR][1000 genomes]
rs12281969	0.84[AFR][1000 genomes];0.96[AMR][1000 genomes];0.96[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs12285828	0.86[EUR][1000 genomes]
rs12287975	0.88[EUR][1000 genomes]
rs12289162	0.92[EUR][1000 genomes]
rs12289921	1.00[CEU][hapmap];1.00[CHB][hapmap];0.86[JPT][hapmap];0.92[YRI][hapmap];0.98[AMR][1000 genomes];0.96[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs12292682	1.00[CEU][hapmap];1.00[JPT][hapmap];0.89[YRI][hapmap];0.88[EUR][1000 genomes]
rs1287111	0.80[EUR][1000 genomes]
rs1287441	0.90[AFR][1000 genomes];0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs1287442	0.80[AFR][1000 genomes];0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs1287446	0.92[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs1287448	0.85[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs1287449	0.80[AMR][1000 genomes];0.83[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs1290457	0.84[EUR][1000 genomes]
rs1290459	0.84[EUR][1000 genomes]
rs1290466	0.90[AMR][1000 genomes];0.90[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs1299800	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.92[YRI][hapmap];0.88[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs1530995	1.00[CHB][hapmap]
rs17046	0.84[EUR][1000 genomes]
rs17153910	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs17153962	1.00[CHB][hapmap]
rs17153982	1.00[CHB][hapmap]
rs17154029	0.84[EUR][1000 genomes]
rs17154134	0.80[EUR][1000 genomes]
rs17154138	0.80[EUR][1000 genomes]
rs17154146	0.80[EUR][1000 genomes]
rs1783212	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs1938690	1.00[CEU][hapmap];1.00[JPT][hapmap];0.92[YRI][hapmap];0.92[EUR][1000 genomes]
rs2186597	0.88[EUR][1000 genomes]
rs2298868	1.00[CHB][hapmap]
rs2298869	1.00[CHB][hapmap]
rs2508335	1.00[JPT][hapmap]
rs2509274	1.00[CEU][hapmap];1.00[JPT][hapmap];0.80[EUR][1000 genomes]
rs2509275	1.00[CEU][hapmap];1.00[JPT][hapmap]
rs2509276	0.80[EUR][1000 genomes]
rs2509279	1.00[JPT][hapmap]
rs2509290	1.00[CEU][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.84[EUR][1000 genomes]
rs2927183	0.84[EUR][1000 genomes]
rs3015969	0.91[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs3019740	0.92[AMR][1000 genomes];0.96[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs3110322	0.84[EUR][1000 genomes]
rs3132748	0.84[EUR][1000 genomes]
rs34350918	0.92[EUR][1000 genomes]
rs3781793	0.80[EUR][1000 genomes]
rs41384548	0.80[EUR][1000 genomes]
rs4301803	0.88[EUR][1000 genomes]
rs4393334	1.00[CEU][hapmap];1.00[JPT][hapmap];0.89[YRI][hapmap];0.88[EUR][1000 genomes]
rs4515985	0.88[EUR][1000 genomes]
rs472177	1.00[CEU][hapmap];1.00[JPT][hapmap];0.92[YRI][hapmap];0.84[EUR][1000 genomes]
rs473087	0.84[EUR][1000 genomes]
rs473490	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.92[YRI][hapmap];0.87[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs474844	0.84[EUR][1000 genomes]
rs475706	0.84[EUR][1000 genomes]
rs478167	0.80[EUR][1000 genomes]
rs482355	0.80[EUR][1000 genomes]
rs485008	0.80[EUR][1000 genomes]
rs485803	1.00[JPT][hapmap]
rs486587	0.80[EUR][1000 genomes]
rs486952	1.00[CHB][hapmap]
rs488331	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.92[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs492652	0.84[EUR][1000 genomes]
rs4939294	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs495564	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.92[YRI][hapmap];0.88[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs498099	1.00[JPT][hapmap]
rs498388	0.84[EUR][1000 genomes]
rs504016	0.80[EUR][1000 genomes]
rs507235	0.80[EUR][1000 genomes]
rs510122	0.80[EUR][1000 genomes]
rs510249	0.83[AFR][1000 genomes];0.94[AMR][1000 genomes];0.94[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs511785	0.80[EUR][1000 genomes]
rs511957	0.84[EUR][1000 genomes]
rs512194	1.00[CEU][hapmap];1.00[JPT][hapmap]
rs512695	0.80[EUR][1000 genomes]
rs513979	1.00[JPT][hapmap]
rs516912	0.80[EUR][1000 genomes]
rs518026	1.00[CHB][hapmap]
rs519605	1.00[CEU][hapmap];1.00[JPT][hapmap];0.80[EUR][1000 genomes]
rs519865	0.97[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs519873	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs521330	0.80[EUR][1000 genomes]
rs523016	0.80[EUR][1000 genomes]
rs524102	1.00[JPT][hapmap]
rs529270	0.80[EUR][1000 genomes]
rs532838	0.94[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs533166	1.00[JPT][hapmap]
rs536544	1.00[JPT][hapmap]
rs536910	1.00[CHB][hapmap];0.89[YRI][hapmap];0.86[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs537625	0.84[EUR][1000 genomes]
rs540684	1.00[CEU][hapmap];1.00[JPT][hapmap];0.84[EUR][1000 genomes]
rs549086	1.00[JPT][hapmap]
rs550189	0.84[EUR][1000 genomes]
rs550822	1.00[JPT][hapmap];0.87[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs552601	1.00[CEU][hapmap];1.00[JPT][hapmap];0.84[EUR][1000 genomes]
rs553700	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.94[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs554149	0.84[EUR][1000 genomes]
rs554848	0.80[EUR][1000 genomes]
rs555175	0.80[EUR][1000 genomes]
rs55667192	0.87[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs559150	1.00[CHB][hapmap]
rs561604	0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs563276	0.88[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs565482	1.00[CHB][hapmap]
rs565983	0.80[EUR][1000 genomes]
rs567485	0.80[EUR][1000 genomes]
rs567994	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.93[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs569326	0.80[EUR][1000 genomes]
rs573592	0.80[EUR][1000 genomes]
rs57529518	0.80[EUR][1000 genomes]
rs57871852	0.80[EUR][1000 genomes]
rs579192	0.84[EUR][1000 genomes]
rs579362	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.89[YRI][hapmap]
rs579373	1.00[CEU][hapmap];1.00[JPT][hapmap];0.80[EUR][1000 genomes]
rs580242	0.84[EUR][1000 genomes]
rs58775794	0.80[EUR][1000 genomes]
rs60009036	0.80[EUR][1000 genomes]
rs6591540	0.85[EUR][1000 genomes]
rs6591541	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.92[YRI][hapmap];0.92[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs693110	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.84[YRI][hapmap];0.90[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7116567	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.89[YRI][hapmap];0.88[AFR][1000 genomes];0.96[AMR][1000 genomes];0.96[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs7118051	1.00[CEU][hapmap]
rs7119778	0.80[EUR][1000 genomes]
rs7124813	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.89[YRI][hapmap];0.86[AFR][1000 genomes];0.96[AMR][1000 genomes];0.96[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs7126593	1.00[CEU][hapmap];1.00[JPT][hapmap];0.89[YRI][hapmap];0.88[EUR][1000 genomes]
rs73486934	0.84[AFR][1000 genomes];0.96[AMR][1000 genomes];0.96[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs73486962	0.92[EUR][1000 genomes]
rs73486971	0.92[EUR][1000 genomes]
rs73486979	0.92[EUR][1000 genomes]
rs73486988	0.88[EUR][1000 genomes]
rs73486997	0.88[EUR][1000 genomes]
rs7941643	0.84[EUR][1000 genomes]
rs7947514	0.80[EUR][1000 genomes]
rs7952367	0.91[AFR][1000 genomes];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs8280	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.92[YRI][hapmap];0.88[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]

No data

Chromatin state (count:93 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:59319000-59323200	Weak transcription	Lung	lung
2	chr11:59319000-59323200	Weak transcription	Pancreas	Pancrea
3	chr11:59319000-59323200	Weak transcription	Spleen	Spleen
4	chr11:59319000-59327800	Weak transcription	Stomach Mucosa	stomach
5	chr11:59319200-59323200	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
6	chr11:59319200-59323200	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
7	chr11:59319200-59323200	Weak transcription	Colonic Mucosa	Colon
8	chr11:59319200-59323200	Weak transcription	Left Ventricle	heart
9	chr11:59319400-59323200	Weak transcription	Primary T helper naive cells from peripheral blood	blood
10	chr11:59319400-59323400	Weak transcription	Duodenum Mucosa	Duodenum
11	chr11:59319600-59323000	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
12	chr11:59319600-59323000	Weak transcription	Primary T helper cells fromperipheralblood	blood
13	chr11:59319600-59323000	Weak transcription	Primary T killer memory cells from peripheral blood	blood
14	chr11:59319600-59323000	Weak transcription	Liver	Liver
15	chr11:59319600-59323000	Weak transcription	Psoas Muscle	Psoas
16	chr11:59319600-59323000	Weak transcription	Skeletal Muscle Male	skeletal muscle
17	chr11:59319600-59323000	Weak transcription	GM12878-XiMat	blood
18	chr11:59319600-59323200	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
19	chr11:59319600-59323200	Weak transcription	Colon Smooth Muscle	Colon
20	chr11:59319600-59323200	Weak transcription	Rectal Mucosa Donor 29	rectum
21	chr11:59319600-59323400	Weak transcription	Fetal Heart	heart
22	chr11:59319800-59322800	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
23	chr11:59319800-59322800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
24	chr11:59319800-59322800	Weak transcription	Brain Anterior Caudate	brain
25	chr11:59319800-59323000	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
26	chr11:59319800-59323000	Weak transcription	Primary T cells fromperipheralblood	blood
27	chr11:59319800-59323000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
28	chr11:59319800-59323000	Weak transcription	Cortex derived primary cultured neurospheres	brain
29	chr11:59319800-59323000	Weak transcription	Brain Angular Gyrus	brain
30	chr11:59319800-59323000	Weak transcription	Brain Hippocampus Middle	brain
31	chr11:59319800-59323000	Weak transcription	Fetal Intestine Small	intestine
32	chr11:59319800-59323000	Weak transcription	NHEK	skin
33	chr11:59319800-59323200	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
34	chr11:59319800-59323200	Weak transcription	Primary T helper cells PMA-I stimulated	--
35	chr11:59319800-59323200	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
36	chr11:59319800-59323200	Weak transcription	Right Atrium	heart
37	chr11:59319800-59323200	Weak transcription	Dnd41	blood
38	chr11:59320000-59322800	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
39	chr11:59320000-59322800	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
40	chr11:59320000-59323000	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
41	chr11:59320000-59323000	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
42	chr11:59320000-59323000	Weak transcription	Primary B cells from peripheral blood	blood
43	chr11:59320000-59323000	Weak transcription	Muscle Satellite Cultured Cells	--
44	chr11:59320000-59323000	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
45	chr11:59320000-59323000	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
46	chr11:59320000-59323000	Weak transcription	Adipose Nuclei	Adipose
47	chr11:59320000-59323000	Weak transcription	Brain Cingulate Gyrus	brain
48	chr11:59320000-59323000	Weak transcription	Brain Inferior Temporal Lobe	brain
49	chr11:59320000-59323000	Weak transcription	Fetal Lung	lung
50	chr11:59320000-59323000	Weak transcription	HMEC	breast

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