Variant report

Variant	rs567994
Chromosome Location	chr11:59329313-59329314
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr11:59326882..59329448-chr11:59381512..59384615,3	MCF-7	breast:
2	chr11:59327282..59329404-chr11:59605781..59608762,2	K562	blood:
3	chr11:59327559..59329707-chr11:59434629..59437486,4	K562	blood:
4	chr11:59327816..59329707-chr11:59434629..59437740,3	K562	blood:
5	chr11:59327475..59330060-chr11:59381628..59383602,2	K562	blood:
6	chr11:59328551..59330174-chr11:59567644..59570291,2	K562	blood:
7	chr11:59318069..59320155-chr11:59327909..59330794,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000166889	Chromatin interaction
ENSG00000255139	Chromatin interaction
ENSG00000255355	Chromatin interaction
ENSG00000110048	Chromatin interaction

Extended variants
information (count: 126 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:126)

rs_ID	r²[population]
rs1121991	0.86[EUR][1000 genomes]
rs11230020	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.96[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[YRI][hapmap];0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];0.90[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs11230027	0.82[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs11230037	1.00[CEU][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.87[LWK][hapmap];1.00[MEX][hapmap];0.87[MKK][hapmap];0.86[YRI][hapmap];0.90[EUR][1000 genomes]
rs1151063	1.00[CEU][hapmap];1.00[JPT][hapmap];0.91[MEX][hapmap]
rs1151064	1.00[CEU][hapmap];1.00[JPT][hapmap];0.91[MEX][hapmap]
rs11821333	0.82[EUR][1000 genomes]
rs11821465	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.96[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[YRI][hapmap];0.90[EUR][1000 genomes]
rs12271188	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];0.94[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs12272588	0.86[EUR][1000 genomes]
rs12276505	1.00[CHB][hapmap];0.86[JPT][hapmap];0.96[AMR][1000 genomes];0.84[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs12278859	0.90[EUR][1000 genomes]
rs12278910	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.86[LWK][hapmap];1.00[MEX][hapmap];0.87[MKK][hapmap];0.90[YRI][hapmap];0.83[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs12280606	0.86[CEU][hapmap];0.88[JPT][hapmap];0.87[LWK][hapmap];0.83[MEX][hapmap];0.87[MKK][hapmap];0.86[YRI][hapmap];0.90[EUR][1000 genomes]
rs12281969	0.81[AFR][1000 genomes];0.98[AMR][1000 genomes];0.94[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs12285828	0.84[EUR][1000 genomes]
rs12287975	0.86[EUR][1000 genomes]
rs12289162	0.90[EUR][1000 genomes]
rs12289921	0.93[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[GIH][hapmap];0.86[JPT][hapmap];0.83[LWK][hapmap];1.00[MEX][hapmap];0.96[MKK][hapmap];0.93[YRI][hapmap];1.00[AMR][1000 genomes];0.94[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs12292682	1.00[CEU][hapmap];1.00[JPT][hapmap];0.90[YRI][hapmap];0.86[EUR][1000 genomes]
rs12797334	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.93[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs1287111	1.00[CEU][hapmap];1.00[JPT][hapmap];0.91[MEX][hapmap]
rs1287441	0.86[AFR][1000 genomes];0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1287442	0.98[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1287446	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1287448	0.82[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs1287449	0.82[AMR][1000 genomes];0.86[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs1290457	0.82[EUR][1000 genomes]
rs1290459	0.82[EUR][1000 genomes]
rs1290466	0.92[AMR][1000 genomes];0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1299800	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.90[YRI][hapmap];0.84[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs1453543	0.81[MEX][hapmap]
rs1530995	1.00[CHB][hapmap];0.91[MEX][hapmap]
rs17046	0.82[EUR][1000 genomes]
rs17153766	0.81[MEX][hapmap]
rs17153910	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17153962	1.00[CHB][hapmap];0.91[MEX][hapmap]
rs17153982	1.00[CHB][hapmap]
rs17154029	0.82[EUR][1000 genomes]
rs1783212	0.89[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1938690	1.00[CEU][hapmap];1.00[JPT][hapmap];0.87[LWK][hapmap];1.00[MEX][hapmap];0.87[MKK][hapmap];0.90[YRI][hapmap];0.90[EUR][1000 genomes]
rs2186597	0.86[EUR][1000 genomes]
rs2198452	0.81[MEX][hapmap]
rs2298868	1.00[CHB][hapmap]
rs2298869	1.00[CHB][hapmap]
rs2508335	1.00[JPT][hapmap]
rs2509274	1.00[CEU][hapmap];1.00[JPT][hapmap];0.91[MEX][hapmap]
rs2509275	1.00[CEU][hapmap];1.00[JPT][hapmap]
rs2509279	1.00[JPT][hapmap]
rs2509290	1.00[CEU][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.82[EUR][1000 genomes]
rs2927183	0.82[EUR][1000 genomes]
rs3015969	0.86[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3019740	0.94[AMR][1000 genomes];0.94[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs3110322	0.82[EUR][1000 genomes]
rs3132748	0.82[EUR][1000 genomes]
rs34350918	0.90[EUR][1000 genomes]
rs41340150	0.91[MEX][hapmap]
rs4301803	0.86[EUR][1000 genomes]
rs4393334	1.00[CEU][hapmap];1.00[JPT][hapmap];0.89[YRI][hapmap];0.86[EUR][1000 genomes]
rs4515985	0.86[EUR][1000 genomes]
rs472177	1.00[CEU][hapmap];1.00[JPT][hapmap];0.85[LWK][hapmap];1.00[MEX][hapmap];0.90[YRI][hapmap];0.82[EUR][1000 genomes]
rs473087	0.82[EUR][1000 genomes]
rs473490	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.89[LWK][hapmap];0.85[MKK][hapmap];0.89[YRI][hapmap];0.83[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs474844	0.82[EUR][1000 genomes]
rs475706	0.82[EUR][1000 genomes]
rs482355	1.00[CEU][hapmap];1.00[JPT][hapmap];0.91[MEX][hapmap]
rs485803	1.00[JPT][hapmap]
rs486952	1.00[CHB][hapmap];0.91[MEX][hapmap]
rs488331	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];0.91[MEX][hapmap];1.00[MKK][hapmap];1.00[YRI][hapmap];0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs492652	0.82[EUR][1000 genomes]
rs4939294	0.93[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs495564	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.92[LWK][hapmap];1.00[MEX][hapmap];0.87[MKK][hapmap];0.90[YRI][hapmap];0.84[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs498099	1.00[JPT][hapmap];0.91[MEX][hapmap]
rs498388	0.82[EUR][1000 genomes]
rs504016	1.00[CEU][hapmap];1.00[JPT][hapmap]
rs506384	0.91[MEX][hapmap]
rs510249	0.82[AFR][1000 genomes];0.96[AMR][1000 genomes];0.92[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs511957	0.82[EUR][1000 genomes]
rs512194	1.00[CEU][hapmap];1.00[JPT][hapmap];0.91[MEX][hapmap]
rs513979	1.00[JPT][hapmap]
rs518026	1.00[CHB][hapmap]
rs519605	1.00[CEU][hapmap];1.00[JPT][hapmap]
rs519865	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs519873	0.92[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs523016	1.00[CEU][hapmap];1.00[JPT][hapmap];0.91[MEX][hapmap]
rs524102	1.00[JPT][hapmap]
rs529270	1.00[CEU][hapmap];1.00[JPT][hapmap];0.91[MEX][hapmap]
rs532838	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs533166	1.00[JPT][hapmap];0.91[MEX][hapmap]
rs536544	1.00[JPT][hapmap];0.91[MEX][hapmap]
rs536910	1.00[CHB][hapmap];0.90[YRI][hapmap];0.82[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs537595	0.91[MEX][hapmap]
rs537625	0.82[EUR][1000 genomes]
rs540684	1.00[CEU][hapmap];1.00[JPT][hapmap];0.90[MEX][hapmap];0.82[EUR][1000 genomes]
rs549086	1.00[JPT][hapmap];0.91[MEX][hapmap]
rs550189	0.82[EUR][1000 genomes]
rs550822	0.82[CEU][hapmap];1.00[JPT][hapmap];0.82[YRI][hapmap];0.83[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs552601	1.00[CEU][hapmap];1.00[JPT][hapmap];0.91[MEX][hapmap];0.82[EUR][1000 genomes]
rs553700	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs554149	0.82[EUR][1000 genomes]
rs555251	0.91[MEX][hapmap]
rs55667192	0.83[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs559150	1.00[CHB][hapmap];0.91[MEX][hapmap]
rs561604	0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs563276	0.85[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs565482	1.00[CHB][hapmap]
rs579192	0.82[EUR][1000 genomes]
rs579362	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.90[YRI][hapmap]
rs579373	1.00[CEU][hapmap];1.00[JPT][hapmap];0.91[MEX][hapmap]
rs580242	0.82[EUR][1000 genomes]
rs6591540	0.84[EUR][1000 genomes]
rs6591541	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.92[LWK][hapmap];1.00[MEX][hapmap];0.86[MKK][hapmap];0.90[YRI][hapmap];0.87[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs693110	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.86[YRI][hapmap];0.85[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7116567	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.90[YRI][hapmap];0.84[AFR][1000 genomes];0.98[AMR][1000 genomes];0.94[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7118051	1.00[CEU][hapmap]
rs7124813	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.90[YRI][hapmap];0.82[AFR][1000 genomes];0.98[AMR][1000 genomes];0.94[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7126593	1.00[CEU][hapmap];1.00[JPT][hapmap];0.90[YRI][hapmap];0.86[EUR][1000 genomes]
rs73486934	0.81[AFR][1000 genomes];0.98[AMR][1000 genomes];0.94[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs73486962	0.90[EUR][1000 genomes]
rs73486971	0.90[EUR][1000 genomes]
rs73486979	0.90[EUR][1000 genomes]
rs73486988	0.86[EUR][1000 genomes]
rs73486997	0.86[EUR][1000 genomes]
rs7941643	0.82[EUR][1000 genomes]
rs7952367	0.85[AFR][1000 genomes];0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs8280	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.91[LWK][hapmap];1.00[MEX][hapmap];0.87[MKK][hapmap];0.90[YRI][hapmap];0.84[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]

No data

Chromatin state (count:76 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:59327600-59329400	Active TSS	Fetal Kidney	kidney
2	chr11:59328200-59329400	Active TSS	Cortex derived primary cultured neurospheres	brain
3	chr11:59328400-59329800	Weak transcription	Placenta Amnion	Placenta Amnion
4	chr11:59328600-59329400	Weak transcription	Sigmoid Colon	Sigmoid Colon
5	chr11:59328600-59329600	Flanking Active TSS	Hela-S3	cervix
6	chr11:59328600-59333200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
7	chr11:59328600-59333200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
8	chr11:59328600-59333200	Weak transcription	Esophagus	oesophagus
9	chr11:59328800-59329400	Enhancers	Primary neutrophils fromperipheralblood	blood
10	chr11:59328800-59329400	Enhancers	Primary B cells from peripheral blood	blood
11	chr11:59328800-59329400	Enhancers	Primary T cells from cord blood	blood
12	chr11:59328800-59329400	Enhancers	Primary T helper naive cells fromperipheralblood	blood
13	chr11:59328800-59329400	Enhancers	Primary T helper cells fromperipheralblood	blood
14	chr11:59328800-59329400	Enhancers	Colon Smooth Muscle	Colon
15	chr11:59328800-59330000	Enhancers	Fetal Intestine Small	intestine
16	chr11:59328800-59330000	Enhancers	Placenta	Placenta
17	chr11:59328800-59330200	Enhancers	Primary T helper cells PMA-I stimulated	--
18	chr11:59328800-59330200	Enhancers	HMEC	breast
19	chr11:59328800-59330400	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
20	chr11:59328800-59333000	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
21	chr11:59328800-59333200	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
22	chr11:59328800-59333200	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
23	chr11:59328800-59333400	Weak transcription	Spleen	Spleen
24	chr11:59329000-59329400	Enhancers	Brain Germinal Matrix	brain
25	chr11:59329000-59329400	Active TSS	Duodenum Mucosa	Duodenum
26	chr11:59329000-59329400	Active TSS	Rectal Mucosa Donor 29	rectum
27	chr11:59329000-59329400	Enhancers	Thymus	Thymus
28	chr11:59329000-59329600	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
29	chr11:59329000-59329600	Enhancers	Stomach Mucosa	stomach
30	chr11:59329000-59329600	Enhancers	Dnd41	blood
31	chr11:59329000-59329600	Enhancers	HepG2	liver
32	chr11:59329000-59329600	Enhancers	K562	blood
33	chr11:59329000-59329800	Enhancers	Fetal Intestine Large	intestine
34	chr11:59329000-59330000	Enhancers	Rectal Mucosa Donor 31	rectum
35	chr11:59329000-59330200	Enhancers	Breast Myoepithelial Primary Cells	Breast
36	chr11:59329000-59330400	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
37	chr11:59329000-59330800	Weak transcription	Primary T killer memory cells from peripheral blood	blood
38	chr11:59329000-59332200	Weak transcription	Fetal Muscle Leg	muscle
39	chr11:59329000-59332400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
40	chr11:59329000-59332400	Weak transcription	GM12878-XiMat	blood
41	chr11:59329000-59332800	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
42	chr11:59329000-59332800	Weak transcription	Primary hematopoietic stem cells short term culture	blood
43	chr11:59329000-59333000	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
44	chr11:59329000-59333000	Weak transcription	iPS-15b Cell Line	embryonic stem cell
45	chr11:59329000-59333000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
46	chr11:59329000-59333000	Weak transcription	Primary monocytes fromperipheralblood	blood
47	chr11:59329000-59333000	Weak transcription	Primary B cells from cord blood	blood
48	chr11:59329000-59333000	Weak transcription	Primary hematopoietic stem cells	blood
49	chr11:59329000-59333000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
50	chr11:59329000-59333000	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin

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