Variant report

Variant	rs482355
Chromosome Location	chr11:59525328-59525329
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:1)
CpG islands
(count:0)
Chromatin interactive
region (count:9)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

(count:1 , 50 per page) page: 1

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	POLR2A	chr11:59524969-59525840	K562	blood:	n/a	n/a

No data

(count:9 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr11:59524561..59526544-chr11:59527654..59529309,2	K562	blood:
2	chr11:59524470..59526644-chr11:59576559..59579477,2	K562	blood:
3	chr11:59524342..59526503-chr11:59895914..59898117,2	K562	blood:
4	chr11:59523011..59526082-chr11:59538557..59541399,3	K562	blood:
5	chr11:59435116..59437063-chr11:59524775..59526282,2	MCF-7	breast:
6	chr11:59515464..59518097-chr11:59523433..59525658,2	K562	blood:
7	chr11:59520935..59525781-chr11:59552803..59557885,8	MCF-7	breast:
8	chr11:59524086..59527100-chr11:59562036..59566257,3	K562	blood:
9	chr11:59519722..59526041-chr11:59575307..59578961,7	MCF-7	breast:

No data

Variant related genes	Relation type
ENSG00000254477	TF binding region
ENSG00000166900	Chromatin interaction
ENSG00000166889	Chromatin interaction
ENSG00000255538	Chromatin interaction
ENSG00000255355	Chromatin interaction
ENSG00000166902	Chromatin interaction

Extended variants
information (count: 226 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:223)

rs_ID	r²[population]
rs10501380	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[TSI][hapmap];0.85[EUR][1000 genomes]
rs1121991	0.92[EUR][1000 genomes]
rs11230020	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];0.91[MEX][hapmap];1.00[TSI][hapmap];0.80[EUR][1000 genomes]
rs11230027	0.80[EUR][1000 genomes]
rs11230037	1.00[CEU][hapmap];1.00[CHB][hapmap];0.90[CHD][hapmap];1.00[JPT][hapmap];0.90[MEX][hapmap];1.00[TSI][hapmap];0.88[EUR][1000 genomes]
rs1151063	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.88[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1151064	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11821333	0.88[AMR][1000 genomes];0.96[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs11821465	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];0.91[MEX][hapmap];1.00[TSI][hapmap];0.88[EUR][1000 genomes]
rs12272588	0.92[EUR][1000 genomes]
rs12276505	0.86[JPT][hapmap]
rs12278859	0.88[EUR][1000 genomes]
rs12278910	1.00[CEU][hapmap];0.90[CHD][hapmap];1.00[JPT][hapmap];0.91[MEX][hapmap];1.00[TSI][hapmap];0.80[EUR][1000 genomes]
rs12280606	0.86[CEU][hapmap];1.00[CHB][hapmap];0.90[CHD][hapmap];0.88[JPT][hapmap];0.88[EUR][1000 genomes]
rs12285828	0.90[EUR][1000 genomes]
rs12287696	1.00[TSI][hapmap]
rs12287975	0.84[EUR][1000 genomes]
rs12289162	0.88[EUR][1000 genomes]
rs12289921	1.00[CEU][hapmap];0.90[CHD][hapmap];0.86[JPT][hapmap];0.91[MEX][hapmap];1.00[TSI][hapmap]
rs12290453	1.00[TSI][hapmap]
rs12292682	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.92[EUR][1000 genomes]
rs12797334	0.80[EUR][1000 genomes]
rs1287111	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.88[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1287441	0.80[EUR][1000 genomes]
rs1287446	0.80[EUR][1000 genomes]
rs1287448	0.80[EUR][1000 genomes]
rs1290457	0.94[AMR][1000 genomes];0.96[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs1290459	0.88[AMR][1000 genomes];0.96[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs1299800	1.00[CEU][hapmap];1.00[JPT][hapmap];0.80[EUR][1000 genomes]
rs17046	0.92[AMR][1000 genomes];0.96[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs17153910	1.00[CEU][hapmap];0.90[CHD][hapmap];1.00[JPT][hapmap];0.91[MEX][hapmap];1.00[TSI][hapmap];0.80[EUR][1000 genomes]
rs17153962	1.00[MEX][hapmap]
rs17154025	1.00[CHB][hapmap]
rs17154029	0.92[AMR][1000 genomes];0.96[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs17154134	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[TSI][hapmap];1.00[EUR][1000 genomes]
rs17154138	1.00[EUR][1000 genomes]
rs17154142	1.00[CHB][hapmap]
rs17154146	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[TSI][hapmap];1.00[EUR][1000 genomes]
rs17154149	1.00[EUR][1000 genomes]
rs17154157	1.00[CEU][hapmap];1.00[JPT][hapmap];1.00[TSI][hapmap];1.00[EUR][1000 genomes]
rs17154165	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[TSI][hapmap];1.00[EUR][1000 genomes]
rs17154169	1.00[EUR][1000 genomes]
rs17154175	1.00[EUR][1000 genomes]
rs17154180	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[TSI][hapmap];1.00[EUR][1000 genomes]
rs17154195	1.00[EUR][1000 genomes]
rs17154200	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[TSI][hapmap];1.00[EUR][1000 genomes]
rs17154203	1.00[CHB][hapmap]
rs17154205	1.00[CHB][hapmap]
rs17154216	1.00[CHB][hapmap]
rs17154222	1.00[EUR][1000 genomes]
rs17154227	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.92[MKK][hapmap];1.00[TSI][hapmap];0.98[EUR][1000 genomes]
rs17154234	1.00[CEU][hapmap];1.00[TSI][hapmap]
rs17510841	1.00[TSI][hapmap]
rs17593682	1.00[TSI][hapmap]
rs17593836	1.00[TSI][hapmap]
rs17596359	1.00[TSI][hapmap]
rs17596862	1.00[CHB][hapmap];1.00[TSI][hapmap]
rs17597065	1.00[CHB][hapmap];1.00[TSI][hapmap]
rs17597092	1.00[TSI][hapmap]
rs1783212	0.80[EUR][1000 genomes]
rs1938690	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];0.91[MEX][hapmap];1.00[TSI][hapmap];0.88[EUR][1000 genomes]
rs2186597	0.92[EUR][1000 genomes]
rs2447310	0.88[AMR][1000 genomes];0.81[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs2508335	1.00[CHB][hapmap];1.00[JPT][hapmap];0.92[AMR][1000 genomes];0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2509274	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2509275	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.82[MEX][hapmap];1.00[TSI][hapmap];0.92[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2509276	0.86[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2509279	1.00[CHB][hapmap];1.00[JPT][hapmap];0.90[AMR][1000 genomes];0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2509290	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.92[AMR][1000 genomes];0.96[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs2509730	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.89[YRI][hapmap];0.81[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs2927182	0.85[EUR][1000 genomes]
rs2927183	0.92[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2927184	1.00[CHB][hapmap];0.81[ASN][1000 genomes]
rs2957223	0.86[AMR][1000 genomes];0.96[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs3015969	0.80[EUR][1000 genomes]
rs3110322	0.92[AMR][1000 genomes];0.96[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs3132748	0.88[AMR][1000 genomes];0.96[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs34350918	0.88[EUR][1000 genomes]
rs35211634	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[GIH][hapmap];1.00[TSI][hapmap]
rs3781792	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[EUR][1000 genomes]
rs3781793	1.00[EUR][1000 genomes]
rs3862660	1.00[EUR][1000 genomes]
rs41340150	1.00[CHB][hapmap];1.00[MEX][hapmap]
rs41384548	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[TSI][hapmap];1.00[EUR][1000 genomes]
rs4301803	0.92[EUR][1000 genomes]
rs4356243	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.98[EUR][1000 genomes]
rs4393334	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.92[EUR][1000 genomes]
rs4515985	0.92[EUR][1000 genomes]
rs471369	0.90[AMR][1000 genomes];0.81[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs472152	0.88[AMR][1000 genomes];0.81[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs472177	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.91[MEX][hapmap];1.00[TSI][hapmap];0.88[AMR][1000 genomes];0.96[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs473087	0.90[AMR][1000 genomes];0.96[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs473490	1.00[CEU][hapmap];0.90[CHD][hapmap];1.00[JPT][hapmap];1.00[TSI][hapmap];0.80[EUR][1000 genomes]
rs473979	1.00[CHB][hapmap]
rs474844	0.88[AMR][1000 genomes];0.96[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs475145	1.00[CHB][hapmap]
rs475706	0.90[AMR][1000 genomes];0.96[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs475800	0.81[ASN][1000 genomes]
rs477577	0.88[AMR][1000 genomes];0.81[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs477729	0.88[AMR][1000 genomes];0.81[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs478167	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.89[YRI][hapmap];0.80[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs479264	0.92[AMR][1000 genomes];0.85[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs480944	0.80[AMR][1000 genomes]
rs481893	0.90[AMR][1000 genomes];0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs482356	0.84[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.98[MKK][hapmap];1.00[TSI][hapmap];0.85[YRI][hapmap];0.80[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs484030	0.81[EUR][1000 genomes]
rs484814	0.92[AMR][1000 genomes];0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs484895	1.00[EUR][1000 genomes]
rs485008	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs485803	1.00[CHB][hapmap];1.00[JPT][hapmap];0.88[AMR][1000 genomes];0.81[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs486587	0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs486952	1.00[MEX][hapmap]
rs488331	1.00[CEU][hapmap];0.90[CHD][hapmap];1.00[JPT][hapmap];0.82[MEX][hapmap];1.00[TSI][hapmap];0.80[EUR][1000 genomes]
rs492652	0.84[AMR][1000 genomes];0.96[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs4939294	0.80[EUR][1000 genomes]
rs494110	0.88[AMR][1000 genomes];0.81[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs495564	1.00[CEU][hapmap];0.90[CHD][hapmap];1.00[JPT][hapmap];0.91[MEX][hapmap];1.00[TSI][hapmap];0.80[EUR][1000 genomes]
rs496938	0.88[AMR][1000 genomes];0.81[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs497596	0.90[AMR][1000 genomes];0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs498099	1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.88[AMR][1000 genomes];0.81[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs498299	0.90[AMR][1000 genomes];0.81[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs498388	0.88[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs499054	0.90[AMR][1000 genomes];0.81[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs504016	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.88[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs504320	0.81[ASN][1000 genomes]
rs506384	1.00[CHB][hapmap];1.00[MEX][hapmap];0.81[ASN][1000 genomes]
rs507235	0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs508411	1.00[CHB][hapmap]
rs510122	0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs511263	0.81[ASN][1000 genomes]
rs511785	0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs511957	0.94[AMR][1000 genomes];0.96[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs512194	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];0.89[MKK][hapmap];1.00[TSI][hapmap];0.92[YRI][hapmap];0.91[AFR][1000 genomes];0.96[AMR][1000 genomes];0.92[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs512690	0.81[ASN][1000 genomes]
rs512695	0.98[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs513979	1.00[CHB][hapmap];1.00[JPT][hapmap];0.88[AMR][1000 genomes];0.81[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs516912	0.84[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.98[MKK][hapmap];0.89[YRI][hapmap];0.87[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs519605	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs519865	0.80[EUR][1000 genomes]
rs519873	0.80[EUR][1000 genomes]
rs520622	1.00[CHB][hapmap]
rs521330	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs523016	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs524102	1.00[CHB][hapmap];1.00[JPT][hapmap];0.88[AMR][1000 genomes];0.81[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs526672	0.88[AMR][1000 genomes];0.81[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs528525	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.89[YRI][hapmap];1.00[EUR][1000 genomes]
rs529270	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs532293	0.81[ASN][1000 genomes]
rs532838	0.80[EUR][1000 genomes]
rs533166	1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.90[AMR][1000 genomes];0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs536544	1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.90[AMR][1000 genomes];0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs536910	0.80[EUR][1000 genomes]
rs537595	1.00[CHB][hapmap];1.00[MEX][hapmap];0.82[AMR][1000 genomes]
rs537625	0.88[AMR][1000 genomes];0.96[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs538169	0.90[AMR][1000 genomes];0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs540684	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.92[AMR][1000 genomes];0.96[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs540989	0.84[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs549086	1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.92[AMR][1000 genomes];0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs550189	0.90[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs550822	0.82[CEU][hapmap];1.00[JPT][hapmap];0.80[EUR][1000 genomes]
rs552601	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.90[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs553700	1.00[CEU][hapmap];1.00[JPT][hapmap];0.80[EUR][1000 genomes]
rs554149	0.88[AMR][1000 genomes];0.96[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs554848	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[TSI][hapmap];1.00[EUR][1000 genomes]
rs555175	0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs555251	1.00[CHB][hapmap];1.00[MEX][hapmap];0.81[ASN][1000 genomes]
rs55667192	0.80[EUR][1000 genomes]
rs558569	0.81[ASN][1000 genomes]
rs559150	1.00[MEX][hapmap]
rs561029	0.92[AMR][1000 genomes];0.81[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs561604	0.80[EUR][1000 genomes]
rs562657	0.90[AMR][1000 genomes];0.81[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs563267	0.90[AMR][1000 genomes];0.81[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs563276	0.80[EUR][1000 genomes]
rs563800	0.92[AMR][1000 genomes];0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs565026	0.81[ASN][1000 genomes]
rs565983	0.84[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs567485	0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs567603	1.00[CEU][hapmap];1.00[JPT][hapmap];1.00[EUR][1000 genomes]
rs567994	1.00[CEU][hapmap];1.00[JPT][hapmap];0.91[MEX][hapmap]
rs569326	0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs573592	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.82[YRI][hapmap];0.87[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs57529518	1.00[EUR][1000 genomes]
rs577224	1.00[CHB][hapmap]
rs577644	0.82[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs57871852	1.00[EUR][1000 genomes]
rs579192	0.88[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs579362	1.00[CEU][hapmap];1.00[JPT][hapmap]
rs579373	0.94[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.97[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs580242	0.96[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs581265	0.82[AMR][1000 genomes];0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs58169611	1.00[EUR][1000 genomes]
rs58775794	1.00[EUR][1000 genomes]
rs60009036	1.00[EUR][1000 genomes]
rs60094706	1.00[EUR][1000 genomes]
rs61636608	1.00[EUR][1000 genomes]
rs6591541	0.80[EUR][1000 genomes]
rs693110	1.00[CEU][hapmap];1.00[JPT][hapmap];0.80[EUR][1000 genomes]
rs7108731	0.81[EUR][1000 genomes]
rs7112355	1.00[TSI][hapmap]
rs7114773	1.00[CEU][hapmap];1.00[JPT][hapmap];1.00[EUR][1000 genomes]
rs7116567	1.00[CEU][hapmap];1.00[JPT][hapmap]
rs7117509	1.00[CEU][hapmap];1.00[TSI][hapmap];0.85[EUR][1000 genomes]
rs7119778	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[EUR][1000 genomes]
rs7123969	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.88[MKK][hapmap];1.00[TSI][hapmap];0.98[EUR][1000 genomes]
rs7124813	1.00[CEU][hapmap];1.00[JPT][hapmap]
rs7126593	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.92[EUR][1000 genomes]
rs7131059	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[EUR][1000 genomes]
rs73486962	0.88[EUR][1000 genomes]
rs73486971	0.88[EUR][1000 genomes]
rs73486979	0.88[EUR][1000 genomes]
rs73486988	0.92[EUR][1000 genomes]
rs73486997	0.92[EUR][1000 genomes]
rs7933970	0.98[EUR][1000 genomes]
rs7937245	1.00[CHB][hapmap]
rs7937684	1.00[CHB][hapmap]
rs7941643	0.88[AMR][1000 genomes];0.96[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs7946152	1.00[EUR][1000 genomes]
rs7947036	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[EUR][1000 genomes]
rs7947514	1.00[CEU][hapmap];1.00[CHB][hapmap];0.83[GIH][hapmap];1.00[JPT][hapmap];1.00[TSI][hapmap];1.00[EUR][1000 genomes]
rs7952024	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[TSI][hapmap];1.00[EUR][1000 genomes]
rs7952367	0.80[EUR][1000 genomes]
rs8280	1.00[CEU][hapmap];0.90[CHD][hapmap];1.00[JPT][hapmap];0.91[MEX][hapmap];1.00[TSI][hapmap];0.80[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2752406	chr11:59490424-59529524	Enhancers Weak transcription Active TSS Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Strong transcription Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	15 gene(s)	inside rSNPs	n/a
2	esv2755215	chr11:59515524-59529524	Active TSS Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Strong transcription Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	n/a
3	nsv1046086	chr11:59520424-59561455	Enhancers Weak transcription Strong transcription Genic enhancers Active TSS Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:89 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:59523800-59525600	Enhancers	Primary monocytes fromperipheralblood	blood
2	chr11:59523800-59532000	Weak transcription	Esophagus	oesophagus
3	chr11:59523800-59533600	Weak transcription	Primary T helper naive cells from peripheral blood	blood
4	chr11:59524000-59525400	Weak transcription	Right Atrium	heart
5	chr11:59524000-59525600	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
6	chr11:59524000-59525600	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
7	chr11:59524000-59539200	Weak transcription	Liver	Liver
8	chr11:59524200-59533800	Weak transcription	Fetal Heart	heart
9	chr11:59524200-59545200	Weak transcription	Brain Hippocampus Middle	brain
10	chr11:59524400-59525400	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
11	chr11:59524400-59525600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
12	chr11:59524400-59526600	Genic enhancers	Lung	lung
13	chr11:59524400-59534000	Weak transcription	Primary T killer memory cells from peripheral blood	blood
14	chr11:59524400-59534200	Weak transcription	Aorta	Aorta
15	chr11:59524400-59542200	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
16	chr11:59524400-59545600	Weak transcription	Brain Inferior Temporal Lobe	brain
17	chr11:59524400-59557000	Weak transcription	Rectal Smooth Muscle	rectum
18	chr11:59524600-59525400	Genic enhancers	ES-I3 Cell Line	embryonic stem cell
19	chr11:59524600-59525800	Enhancers	H1 Cell Line	embryonic stem cell
20	chr11:59524600-59527000	Genic enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
21	chr11:59524600-59528600	Enhancers	Pancreas	Pancrea
22	chr11:59524600-59528800	Weak transcription	Right Ventricle	heart
23	chr11:59524600-59529000	Weak transcription	Psoas Muscle	Psoas
24	chr11:59524600-59533800	Weak transcription	Primary T cells from cord blood	blood
25	chr11:59524600-59534000	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
26	chr11:59524600-59537200	Weak transcription	NHLF	lung
27	chr11:59524600-59538400	Weak transcription	Brain Anterior Caudate	brain
28	chr11:59524600-59557400	Weak transcription	Colon Smooth Muscle	Colon
29	chr11:59524600-59573800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
30	chr11:59524800-59525400	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
31	chr11:59524800-59525400	Enhancers	Rectal Mucosa Donor 31	rectum
32	chr11:59524800-59525600	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
33	chr11:59524800-59525600	Weak transcription	iPS-20b Cell Line	embryonic stem cell
34	chr11:59524800-59525600	Enhancers	Stomach Mucosa	stomach
35	chr11:59524800-59525600	Genic enhancers	NHEK	skin
36	chr11:59524800-59525800	Flanking Active TSS	Foreskin Melanocyte Primary Cells skin01	Skin
37	chr11:59524800-59526200	Enhancers	Duodenum Mucosa	Duodenum
38	chr11:59524800-59528400	Weak transcription	HUES6 Cell Line	embryonic stem cell
39	chr11:59524800-59529000	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
40	chr11:59524800-59532800	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
41	chr11:59524800-59533400	Weak transcription	Primary B cells from peripheral blood	blood
42	chr11:59524800-59534000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
43	chr11:59524800-59534200	Weak transcription	Spleen	Spleen
44	chr11:59524800-59536400	Weak transcription	NHDF-Ad	bronchial
45	chr11:59524800-59539400	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
46	chr11:59524800-59540600	Weak transcription	HUES48 Cell Line	embryonic stem cell
47	chr11:59524800-59543000	Weak transcription	A549	lung
48	chr11:59524800-59543800	Weak transcription	NH-A	brain
49	chr11:59524800-59553400	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
50	chr11:59524800-59555400	Weak transcription	Stomach Smooth Muscle	stomach

The 2.0 version of rSNPBase

Variant report

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