Variant report

Variant	rs35211634
Chromosome Location	chr11:59612859-59612860
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 84 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:84)

rs_ID	r²[population]
rs10501380	1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[TSI][hapmap]
rs11230037	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[TSI][hapmap]
rs1151063	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[GIH][hapmap];1.00[TSI][hapmap]
rs1151064	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[GIH][hapmap];1.00[TSI][hapmap]
rs11821465	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[TSI][hapmap]
rs12287696	1.00[TSI][hapmap]
rs12290453	1.00[TSI][hapmap]
rs12292682	1.00[CEU][hapmap];1.00[CHB][hapmap]
rs1287111	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[GIH][hapmap];1.00[TSI][hapmap]
rs17154025	1.00[CHB][hapmap]
rs17154134	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[TSI][hapmap]
rs17154142	1.00[CHB][hapmap]
rs17154146	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[TSI][hapmap]
rs17154157	1.00[CEU][hapmap];1.00[CHD][hapmap];1.00[TSI][hapmap]
rs17154165	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[TSI][hapmap]
rs17154180	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[TSI][hapmap]
rs17154200	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[GIH][hapmap];1.00[TSI][hapmap]
rs17154203	1.00[CHB][hapmap]
rs17154205	1.00[CHB][hapmap]
rs17154216	1.00[CHB][hapmap]
rs17154227	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[TSI][hapmap]
rs17154234	1.00[CEU][hapmap];1.00[TSI][hapmap];0.89[EUR][1000 genomes]
rs17510841	1.00[TSI][hapmap]
rs17596359	1.00[TSI][hapmap]
rs17596862	1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];1.00[TSI][hapmap];1.00[ASN][1000 genomes]
rs17597065	1.00[CHB][hapmap];0.87[CHD][hapmap];1.00[JPT][hapmap];1.00[TSI][hapmap];1.00[ASN][1000 genomes]
rs17597092	1.00[TSI][hapmap]
rs1938690	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[TSI][hapmap]
rs2508335	1.00[CHB][hapmap]
rs2509274	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[GIH][hapmap];1.00[TSI][hapmap]
rs2509275	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[TSI][hapmap]
rs2509279	1.00[CHB][hapmap]
rs2509290	1.00[CEU][hapmap];1.00[CHB][hapmap]
rs2509730	1.00[CEU][hapmap];1.00[CHB][hapmap]
rs2927184	1.00[CHB][hapmap]
rs3781792	1.00[CEU][hapmap];1.00[CHB][hapmap]
rs41384548	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[TSI][hapmap]
rs4356243	1.00[CEU][hapmap];1.00[CHB][hapmap]
rs4393334	1.00[CEU][hapmap];1.00[CHB][hapmap]
rs472177	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[GIH][hapmap];1.00[TSI][hapmap]
rs473979	1.00[CHB][hapmap]
rs475145	1.00[CHB][hapmap]
rs478167	1.00[CEU][hapmap];1.00[CHB][hapmap]
rs482355	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[GIH][hapmap];1.00[TSI][hapmap]
rs482356	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[TSI][hapmap]
rs485803	1.00[CHB][hapmap]
rs498099	1.00[CHB][hapmap];1.00[TSI][hapmap]
rs504016	1.00[CEU][hapmap];1.00[CHB][hapmap]
rs506384	1.00[CHB][hapmap]
rs508411	1.00[CHB][hapmap]
rs512194	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[GIH][hapmap];1.00[TSI][hapmap]
rs513979	1.00[CHB][hapmap]
rs516912	1.00[CEU][hapmap];1.00[CHB][hapmap];0.85[CHD][hapmap];1.00[GIH][hapmap]
rs519605	1.00[CEU][hapmap];1.00[CHB][hapmap]
rs520622	1.00[CHB][hapmap]
rs523016	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[GIH][hapmap];1.00[TSI][hapmap]
rs524102	1.00[CHB][hapmap]
rs528525	1.00[CEU][hapmap];1.00[CHB][hapmap]
rs529270	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[GIH][hapmap];1.00[TSI][hapmap]
rs533166	1.00[CHB][hapmap];1.00[TSI][hapmap]
rs536544	1.00[CHB][hapmap];1.00[TSI][hapmap]
rs537595	1.00[CHB][hapmap]
rs540684	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[GIH][hapmap];1.00[TSI][hapmap]
rs549086	1.00[CHB][hapmap];1.00[TSI][hapmap]
rs552601	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[GIH][hapmap];1.00[TSI][hapmap]
rs554848	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[TSI][hapmap]
rs555251	1.00[CHB][hapmap]
rs567603	1.00[CEU][hapmap]
rs573592	1.00[CEU][hapmap];1.00[CHB][hapmap]
rs577224	1.00[CHB][hapmap]
rs579373	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[GIH][hapmap];1.00[TSI][hapmap]
rs7108731	0.84[EUR][1000 genomes]
rs7112355	1.00[TSI][hapmap]
rs7114773	1.00[CEU][hapmap]
rs7117509	1.00[CEU][hapmap];1.00[TSI][hapmap];0.88[EUR][1000 genomes]
rs7119778	1.00[CEU][hapmap];1.00[CHB][hapmap]
rs7123969	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[TSI][hapmap]
rs7126593	1.00[CEU][hapmap];1.00[CHB][hapmap]
rs7131059	1.00[CEU][hapmap];1.00[CHB][hapmap]
rs7937245	1.00[CHB][hapmap]
rs7937684	1.00[CHB][hapmap]
rs7947036	1.00[CEU][hapmap];1.00[CHB][hapmap]
rs7947514	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.83[GIH][hapmap];1.00[TSI][hapmap]
rs7952024	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[TSI][hapmap]

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs35211634	MS4A7	cis	lymphoblastoid	seeQTL

Chromatin state (count:9 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:59607000-59615000	Weak transcription	Pancreas	Pancrea
2	chr11:59610000-59613800	Weak transcription	Gastric	stomach
3	chr11:59610400-59614200	Weak transcription	Primary neutrophils fromperipheralblood	blood
4	chr11:59612600-59615400	Enhancers	K562	blood
5	chr11:59612800-59613000	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
6	chr11:59612800-59613200	Enhancers	Fetal Intestine Small	intestine
7	chr11:59612800-59613400	Enhancers	H1 Cell Line	embryonic stem cell
8	chr11:59612800-59613400	Enhancers	Fetal Intestine Large	intestine
9	chr11:59612800-59615200	Enhancers	Stomach Mucosa	stomach

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