Variant report

Variant	rs17154205
Chromosome Location	chr11:59578561-59578562
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	GABPA	chr11:59577681-59578672	MCF-7	breast:	n/a	n/a
2	MAX	chr11:59577686-59578612	HCT-116	colon:	n/a	chr11:59578022-59578032
3	EP300	chr11:59578016-59578693	K562	blood:	n/a	chr11:59578238-59578254 chr11:59578639-59578646 chr11:59578251-59578258
4	PML	chr11:59577760-59578773	GM12878	blood:	n/a	n/a
5	RUNX3	chr11:59577777-59578627	GM12878	blood:	n/a	n/a
6	CBX3	chr11:59577809-59578631	HCT-116	colon:	n/a	n/a
7	SIN3AK20	chr11:59577737-59578654	MCF-7	breast:	n/a	n/a
8	HCFC1	chr11:59577807-59578689	K562	blood:	n/a	n/a
9	MAX	chr11:59577763-59578649	NB4	blood:	n/a	chr11:59578022-59578032
10	POLR2A	chr11:59577741-59578602	GM18526	blood:	n/a	n/a
11	POLR2A	chr11:59577690-59578590	HL-60	blood:	n/a	n/a
12	SP1	chr11:59577959-59578596	A549	lung:	n/a	chr11:59578030-59578044 chr11:59578024-59578038 chr11:59578451-59578460 chr11:59578449-59578461 chr11:59578451-59578460 chr11:59578450-59578459 chr11:59578374-59578384
13	POLR2A	chr11:59577940-59578564	HepG2	liver:	n/a	n/a
14	RELA	chr11:59577801-59578586	GM12891	blood:	n/a	n/a
15	POLR2A	chr11:59577692-59578630	HCT-116	colon:	n/a	n/a
16	POLR2A	chr11:59577604-59578691	HUVEC	blood vessel:	n/a	n/a
17	POLR2A	chr11:59577626-59578664	H1-hESC	embryonic stem cell:	n/a	n/a
18	SP1	chr11:59578003-59578565	GM12878	blood:	n/a	chr11:59578030-59578044 chr11:59578024-59578038 chr11:59578451-59578460 chr11:59578449-59578461 chr11:59578451-59578460 chr11:59578450-59578459 chr11:59578374-59578384
19	POLR2A	chr11:59577737-59578577	K562	blood:	n/a	n/a
20	MAX	chr11:59577707-59578565	HepG2	liver:	n/a	chr11:59578022-59578032
21	POLR2A	chr11:59577650-59578746	SK-N-MC	brain:	n/a	n/a
22	POLR2A	chr11:59577713-59578601	ECC-1	luminal epithelium:	n/a	n/a
23	POLR2A	chr11:59577949-59578627	HUVEC	blood vessel:	n/a	n/a
24	TAF1	chr11:59577932-59578563	SK-N-SH	brain:	n/a	n/a
25	POLR2A	chr11:59577660-59578654	U87	brain:	n/a	n/a
26	POLR2A	chr11:59577579-59578680	H1-hESC	embryonic stem cell:	n/a	n/a
27	TBL1XR1	chr11:59578018-59578680	GM12878	blood:	n/a	n/a
28	SIN3AK20	chr11:59577949-59578563	PANC-1	pancreas:	n/a	n/a
29	MAZ	chr11:59577868-59578594	GM12878	blood:	n/a	chr11:59578022-59578032
30	CBX3	chr11:59577719-59578673	HCT-116	colon:	n/a	n/a
31	POLR2A	chr11:59577775-59578601	NB4	blood:	n/a	n/a
32	MAFK	chr11:59577960-59578684	K562	blood:	n/a	n/a
33	TAF1	chr11:59577839-59578646	A549	lung:	n/a	n/a
34	POLR2A	chr11:59577975-59578633	H1-neurons	neurons:	n/a	n/a
35	GABPA	chr11:59577604-59578788	HL-60	blood:	n/a	n/a
36	SIX5	chr11:59577917-59578645	A549	lung:	n/a	n/a
37	POLR2A	chr11:59577830-59578613	GM12878	blood:	n/a	n/a
38	GATA1	chr11:59577792-59578735	PBDE	blood:	n/a	n/a
39	POLR2A	chr11:59577786-59578601	U87	brain:	n/a	n/a
40	GABPA	chr11:59577657-59579101	MCF-7	breast:	n/a	n/a
41	TAF1	chr11:59577703-59578760	ECC-1	luminal epithelium:	n/a	n/a
42	CHD1	chr11:59577859-59578631	H1-hESC	embryonic stem cell:	n/a	chr11:59578451-59578461 chr11:59578356-59578363
43	POLR2A	chr11:59577804-59578567	HepG2	liver:	n/a	n/a
44	PBX3	chr11:59578005-59578575	A549	lung:	n/a	n/a
45	REST	chr11:59577674-59578996	H1-neurons	neurons:	n/a	chr11:59578154-59578167
46	POLR2A	chr11:59577654-59578812	GM12891	blood:	n/a	n/a
47	SP1	chr11:59577968-59578562	H1-hESC	embryonic stem cell:	n/a	chr11:59578030-59578044 chr11:59578024-59578038 chr11:59578451-59578460 chr11:59578449-59578461 chr11:59578451-59578460 chr11:59578450-59578459 chr11:59578374-59578384
48	SMC3	chr11:59577841-59578663	K562	blood:	n/a	n/a
49	FOXA2	chr11:59578126-59578585	A549	lung:	n/a	chr11:59578469-59578481
50	POLR2A	chr11:59577629-59578644	PFSK-1	brain:	n/a	n/a

No.	Chromosome Location	Cell Line	Cell type	Cell Stage
1	chr11:59578540-59578590	PrEC	prostate:	n/a
2	chr11:59578540-59578590	HIPEpiC	eye:	n/a
3	chr11:59578514-59578564	SKMC	muscle:	n/a
4	chr11:59578540-59578590	HRE	kidney:	n/a
5	chr11:59578540-59578590	NHBE	bronchial:	n/a
6	chr11:59578540-59578590	HPAEpiC	pulmonary alveolar:	n/a
7	chr11:59578540-59578590	MCF10A-Er-Src	breast:	n/a
8	chr11:59578540-59578590	HRCEpiC	kidney:	n/a
9	chr11:59578540-59578590	Hepatocyte	liver:	n/a
10	chr11:59578514-59578564	ECC-1	luminal epithelium:	n/a
11	chr11:59578540-59578590	K562	blood:	n/a
12	chr11:59578540-59578590	AG09309	skin:	n/a
13	chr11:59578514-59578564	ProgFib	skin:	n/a
14	chr11:59578540-59578590	AG04449	skin:	fetal
15	chr11:59578540-59578590	SK-N-SH	brain:	n/a
16	chr11:59578514-59578564	BJ	skin:	n/a
17	chr11:59578514-59578564	SK-N-SH_RA	brain:	n/a
18	chr11:59578540-59578590	AG10803	skin:	n/a
19	chr11:59578514-59578564	HIPEpiC	eye:	n/a
20	chr11:59578540-59578590	HNPCEpiC	eye:	n/a
21	chr11:59578540-59578590	ECC-1	luminal epithelium:	n/a
22	chr11:59578540-59578590	PANC-1	pancreas:	n/a
23	chr11:59578514-59578564	SAEC	small airway:	n/a
24	chr11:59578540-59578590	HCPEpiC	choroid plexus:	n/a
25	chr11:59578514-59578564	GM06990	blood:	n/a
26	chr11:59578540-59578590	SK-N-SH_RA	brain:	n/a
27	chr11:59578540-59578590	NH-A	brain:	n/a
28	chr11:59578514-59578564	GM19239	blood:	n/a
29	chr11:59578540-59578590	HUVEC	blood vessel:	n/a
30	chr11:59578540-59578590	GM12891	blood:	n/a
31	chr11:59578514-59578564	HCF	heart:	n/a
32	chr11:59578540-59578590	NHDF-neo	bronchial:	n/a
33	chr11:59578540-59578590	HCM	heart:	n/a
34	chr11:59578514-59578564	AG04449	skin:	fetal
35	chr11:59578540-59578590	ProgFib	skin:	n/a
36	chr11:59578514-59578564	HNPCEpiC	eye:	n/a
37	chr11:59578514-59578564	HepG2	liver:	n/a
38	chr11:59578514-59578564	HEEpiC	esophagus:	n/a
39	chr11:59578514-59578564	T-47D	breast:	n/a
40	chr11:59578514-59578564	PFSK-1	brain:	n/a
41	chr11:59578514-59578564	HCT-116	colon:	n/a
42	chr11:59578540-59578590	T-47D	breast:	n/a
43	chr11:59578514-59578564	RPTEC	kidney:	n/a
44	chr11:59578540-59578590	HEK293	kidney:	embryo
45	chr11:59578540-59578590	Jurkat	blood:	n/a
46	chr11:59578514-59578564	U87	brain:	n/a
47	chr11:59578540-59578590	PFSK-1	brain:	n/a
48	chr11:59578540-59578590	GM12878	blood:	n/a
49	chr11:59578540-59578590	HepG2	liver:	n/a
50	chr11:59578514-59578564	SK-N-SH	brain:	n/a

No.	Distal block	Cell Line	Cell type
1	chr11:59519722..59526041-chr11:59575307..59578961,7	MCF-7	breast:
2	chr11:59560226..59562166-chr11:59576815..59579277,2	MCF-7	breast:
3	chr11:59520214..59524923-chr11:59576549..59579669,4	MCF-7	breast:
4	chr11:59382346..59384021-chr11:59576839..59579644,2	K562	blood:

Variant related genes	Relation type
MRPL16	TF binding region
MRPL16	CpG island
ENSG00000110048	Chromatin interaction
ENSG00000254477	Chromatin interaction
ENSG00000255139	Chromatin interaction
ENSG00000166900	Chromatin interaction

Extended variants
information (count: 125 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:125)

rs_ID	r²[population]
rs10501380	1.00[CHB][hapmap]
rs11230020	1.00[CHB][hapmap]
rs11230037	1.00[CHB][hapmap]
rs1151063	1.00[CHB][hapmap]
rs1151064	1.00[CHB][hapmap]
rs11821465	1.00[CHB][hapmap]
rs12275314	1.00[EUR][1000 genomes]
rs12280446	1.00[EUR][1000 genomes]
rs12280606	1.00[CHB][hapmap]
rs12282618	1.00[EUR][1000 genomes]
rs12292682	1.00[CHB][hapmap]
rs1287111	1.00[CHB][hapmap]
rs1290460	1.00[EUR][1000 genomes]
rs17154025	1.00[CHB][hapmap];1.00[JPT][hapmap];0.87[EUR][1000 genomes]
rs17154134	1.00[CHB][hapmap];0.85[AMR][1000 genomes]
rs17154138	0.85[AMR][1000 genomes]
rs17154142	1.00[CHB][hapmap];1.00[JPT][hapmap];0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17154146	1.00[CHB][hapmap];0.85[AMR][1000 genomes]
rs17154149	0.85[AMR][1000 genomes]
rs17154157	0.85[AMR][1000 genomes]
rs17154165	1.00[CHB][hapmap];0.85[AMR][1000 genomes]
rs17154169	0.82[AMR][1000 genomes]
rs17154175	0.82[AMR][1000 genomes]
rs17154180	1.00[CHB][hapmap];0.82[AMR][1000 genomes]
rs17154195	0.85[AMR][1000 genomes]
rs17154200	1.00[CHB][hapmap];0.85[AMR][1000 genomes]
rs17154203	1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[YRI][hapmap];0.97[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs17154216	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.94[AFR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17154220	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17154227	1.00[CHB][hapmap]
rs17596862	1.00[CHB][hapmap]
rs17597065	1.00[CHB][hapmap]
rs1938690	1.00[CHB][hapmap]
rs2298589	1.00[CHB][hapmap];1.00[JPT][hapmap];0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2447309	1.00[EUR][1000 genomes]
rs2508335	1.00[CHB][hapmap]
rs2508339	1.00[EUR][1000 genomes]
rs2509274	1.00[CHB][hapmap]
rs2509275	1.00[CHB][hapmap]
rs2509279	1.00[CHB][hapmap]
rs2509290	1.00[CHB][hapmap]
rs2509730	1.00[CHB][hapmap]
rs2927184	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[EUR][1000 genomes]
rs2957227	1.00[EUR][1000 genomes]
rs3110321	1.00[EUR][1000 genomes]
rs35211634	1.00[CHB][hapmap]
rs3781792	1.00[CHB][hapmap];0.81[YRI][hapmap];0.85[AMR][1000 genomes]
rs3862660	0.85[AMR][1000 genomes]
rs41340150	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs41384548	1.00[CHB][hapmap]
rs4356243	1.00[CHB][hapmap]
rs4393334	1.00[CHB][hapmap]
rs472177	1.00[CHB][hapmap]
rs473679	1.00[EUR][1000 genomes]
rs473912	1.00[EUR][1000 genomes]
rs473979	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[EUR][1000 genomes]
rs475145	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[EUR][1000 genomes]
rs478167	1.00[CHB][hapmap]
rs478924	1.00[EUR][1000 genomes]
rs482355	1.00[CHB][hapmap]
rs482356	1.00[CHB][hapmap]
rs485803	1.00[CHB][hapmap]
rs493025	1.00[EUR][1000 genomes]
rs498099	1.00[CHB][hapmap]
rs498165	1.00[EUR][1000 genomes]
rs501288	1.00[EUR][1000 genomes]
rs504016	1.00[CHB][hapmap]
rs504320	1.00[EUR][1000 genomes]
rs506384	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[EUR][1000 genomes]
rs508411	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[EUR][1000 genomes]
rs511263	1.00[EUR][1000 genomes]
rs512194	1.00[CHB][hapmap]
rs512690	1.00[EUR][1000 genomes]
rs513979	1.00[CHB][hapmap]
rs516912	1.00[CHB][hapmap]
rs519605	1.00[CHB][hapmap]
rs520622	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs523016	1.00[CHB][hapmap]
rs524102	1.00[CHB][hapmap]
rs528525	1.00[CHB][hapmap]
rs529270	1.00[CHB][hapmap]
rs532293	1.00[EUR][1000 genomes]
rs533166	1.00[CHB][hapmap]
rs536544	1.00[CHB][hapmap]
rs537595	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs540684	1.00[CHB][hapmap]
rs549086	1.00[CHB][hapmap]
rs550449	1.00[EUR][1000 genomes]
rs552601	1.00[CHB][hapmap]
rs554460	1.00[EUR][1000 genomes]
rs554848	1.00[CHB][hapmap]
rs555251	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[EUR][1000 genomes]
rs558569	1.00[EUR][1000 genomes]
rs559192	1.00[EUR][1000 genomes]
rs565026	1.00[EUR][1000 genomes]
rs567253	1.00[EUR][1000 genomes]
rs567603	1.00[CHB][hapmap]
rs571451	1.00[EUR][1000 genomes]
rs572138	1.00[EUR][1000 genomes]
rs573592	1.00[CHB][hapmap]
rs577224	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[EUR][1000 genomes]
rs577644	1.00[EUR][1000 genomes]
rs579373	1.00[CHB][hapmap]
rs58169611	0.85[AMR][1000 genomes]
rs59057725	1.00[AFR][1000 genomes];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs60094706	0.85[AMR][1000 genomes]
rs60146927	1.00[EUR][1000 genomes]
rs60628632	0.87[AFR][1000 genomes];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs60659006	1.00[EUR][1000 genomes]
rs61370741	1.00[AFR][1000 genomes];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61463035	0.97[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs61636608	0.85[AMR][1000 genomes]
rs7114773	0.90[YRI][hapmap];0.85[AMR][1000 genomes]
rs7119778	1.00[CHB][hapmap];0.81[YRI][hapmap];0.85[AMR][1000 genomes]
rs7123969	1.00[CHB][hapmap]
rs7126593	1.00[CHB][hapmap]
rs7131059	1.00[CHB][hapmap];0.85[AMR][1000 genomes]
rs73488820	1.00[EUR][1000 genomes]
rs7933970	0.85[AMR][1000 genomes]
rs7937245	1.00[CHB][hapmap];1.00[JPT][hapmap];0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7937684	1.00[CHB][hapmap];1.00[JPT][hapmap];0.87[YRI][hapmap];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7946152	0.85[AMR][1000 genomes]
rs7947036	1.00[CHB][hapmap];0.85[AMR][1000 genomes]
rs7947514	1.00[CHB][hapmap]
rs7952024	1.00[CHB][hapmap];0.85[AMR][1000 genomes]

No data

Chromatin state (count:124 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:59576400-59578600	Active TSS	K562	blood
2	chr11:59576800-59578600	Active TSS	HUES64 Cell Line	embryonic stem cell
3	chr11:59576800-59578800	Active TSS	Foreskin Fibroblast Primary Cells skin02	Skin
4	chr11:59577000-59578600	Active TSS	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
5	chr11:59577000-59578600	Active TSS	H9 Cell Line	embryonic stem cell
6	chr11:59577000-59578600	Active TSS	HUES48 Cell Line	embryonic stem cell
7	chr11:59577000-59578600	Active TSS	Muscle Satellite Cultured Cells	--
8	chr11:59577000-59578800	Active TSS	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
9	chr11:59577000-59578800	Active TSS	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
10	chr11:59577000-59578800	Flanking Active TSS	Primary hematopoietic stem cells	blood
11	chr11:59577000-59578800	Active TSS	Fetal Brain Female	brain
12	chr11:59577000-59579000	Active TSS	ES-I3 Cell Line	embryonic stem cell
13	chr11:59577000-59579000	Active TSS	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
14	chr11:59577200-59578600	Active TSS	H1 Cell Line	embryonic stem cell
15	chr11:59577200-59578600	Active TSS	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
16	chr11:59577200-59578600	Active TSS	iPS-15b Cell Line	embryonic stem cell
17	chr11:59577200-59578600	Active TSS	iPS-18 Cell Line	embryonic stem cell
18	chr11:59577200-59578600	Active TSS	iPS DF 6.9 Cell Line	embryonic stem cell
19	chr11:59577200-59578600	Active TSS	iPS DF 19.11 Cell Line	embryonic stem cell
20	chr11:59577200-59578600	Active TSS	ES-UCSF4 Cell Line	embryonic stem cell
21	chr11:59577200-59578600	Flanking Active TSS	Primary T cells fromperipheralblood	blood
22	chr11:59577200-59578600	Active TSS	Foreskin Keratinocyte Primary Cells skin03	Skin
23	chr11:59577200-59578600	Active TSS	Colon Smooth Muscle	Colon
24	chr11:59577200-59578600	Active TSS	HMEC	breast
25	chr11:59577200-59578600	Active TSS	NHDF-Ad	bronchial
26	chr11:59577200-59578800	Active TSS	ES-WA7 Cell Line	embryonic stem cell
27	chr11:59577200-59578800	Active TSS	Fetal Kidney	kidney
28	chr11:59577200-59578800	Active TSS	Left Ventricle	heart
29	chr11:59577200-59578800	Active TSS	Right Ventricle	heart
30	chr11:59577200-59579000	Active TSS	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
31	chr11:59577400-59578600	Active TSS	HUES6 Cell Line	embryonic stem cell
32	chr11:59577400-59578600	Active TSS	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
33	chr11:59577400-59578600	Active TSS	Brain Anterior Caudate	brain
34	chr11:59577400-59578600	Active TSS	Brain Cingulate Gyrus	brain
35	chr11:59577400-59578600	Active TSS	Esophagus	oesophagus
36	chr11:59577400-59578600	Active TSS	Fetal Brain Male	brain
37	chr11:59577400-59578600	Active TSS	Fetal Intestine Large	intestine
38	chr11:59577400-59578600	Flanking Active TSS	Placenta	Placenta
39	chr11:59577400-59578600	Active TSS	Fetal Stomach	stomach
40	chr11:59577400-59578600	Active TSS	Gastric	stomach
41	chr11:59577400-59578600	Active TSS	Ovary	ovary
42	chr11:59577400-59578600	Active TSS	Pancreas	Pancrea
43	chr11:59577400-59578600	Active TSS	Stomach Smooth Muscle	stomach
44	chr11:59577400-59578800	Active TSS	IMR90 fetal lung fibroblasts Cell Line	lung
45	chr11:59577400-59578800	Flanking Active TSS	Primary neutrophils fromperipheralblood	blood
46	chr11:59577400-59578800	Active TSS	Foreskin Fibroblast Primary Cells skin01	Skin
47	chr11:59577400-59578800	Active TSS	Aorta	Aorta
48	chr11:59577400-59578800	Active TSS	Psoas Muscle	Psoas
49	chr11:59577400-59578800	Active TSS	Right Atrium	heart
50	chr11:59577400-59578800	Active TSS	HSMMtube	muscle

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links