Variant report

Variant	rs17154203
Chromosome Location	chr11:59568943-59568944
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:14)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:14 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr11:59541502..59544247-chr11:59567174..59569666,2	MCF-7	breast:
2	chr11:59568062..59571452-chr11:59575621..59577818,3	MCF-7	breast:
3	chr11:59567507..59571426-chr11:59571607..59574837,4	MCF-7	breast:
4	chr11:59520634..59522259-chr11:59568757..59570737,15	MCF-7	breast:
5	chr11:59559044..59561942-chr11:59568536..59570809,2	K562	blood:
6	chr11:59556392..59558299-chr11:59566881..59569624,2	MCF-7	breast:
7	chr11:59559044..59563434-chr11:59567753..59571194,4	K562	blood:
8	chr11:59520892..59524346-chr11:59566262..59571236,10	MCF-7	breast:
9	chr11:59567961..59570706-chr11:59575897..59577810,2	MCF-7	breast:
10	chr11:59521192..59521888-chr11:59568592..59569530,2	MCF-7	breast:
11	chr11:59519179..59526050-chr11:59565310..59570378,11	MCF-7	breast:
12	chr11:59535283..59538247-chr11:59566815..59570479,3	K562	blood:
13	chr11:59328551..59330174-chr11:59567644..59570291,2	K562	blood:
14	chr11:59335068..59337409-chr11:59567332..59569070,2	MCF-7	breast:

No data

Variant related genes	Relation type
ENSG00000166902	Chromatin interaction
ENSG00000166900	Chromatin interaction
ENSG00000254477	Chromatin interaction

Extended variants
information (count: 105 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:105)

rs_ID	r²[population]
rs10501380	1.00[CHB][hapmap];1.00[MEX][hapmap]
rs11230020	1.00[CHB][hapmap]
rs11230037	1.00[CHB][hapmap]
rs1151063	1.00[CHB][hapmap]
rs1151064	1.00[CHB][hapmap]
rs11820340	1.00[EUR][1000 genomes]
rs11821465	1.00[CHB][hapmap]
rs11825669	1.00[CEU][hapmap]
rs12270043	1.00[EUR][1000 genomes]
rs12276956	1.00[EUR][1000 genomes]
rs12280606	1.00[CHB][hapmap]
rs12292682	1.00[CHB][hapmap]
rs1287111	1.00[CHB][hapmap]
rs17153982	1.00[JPT][hapmap]
rs17154025	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs17154134	1.00[CHB][hapmap];1.00[MEX][hapmap];0.82[AMR][1000 genomes]
rs17154138	0.82[AMR][1000 genomes]
rs17154142	1.00[CHB][hapmap];1.00[JPT][hapmap];0.86[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs17154146	1.00[CHB][hapmap];1.00[MEX][hapmap];0.82[AMR][1000 genomes]
rs17154149	0.82[AMR][1000 genomes]
rs17154157	1.00[MEX][hapmap];0.82[AMR][1000 genomes]
rs17154165	1.00[CHB][hapmap];1.00[MEX][hapmap];0.82[AMR][1000 genomes]
rs17154180	1.00[CHB][hapmap];1.00[MEX][hapmap];0.85[AMR][1000 genomes]
rs17154195	0.82[AMR][1000 genomes]
rs17154200	1.00[CHB][hapmap];0.82[AMR][1000 genomes]
rs17154205	1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[YRI][hapmap];0.97[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs17154216	1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[YRI][hapmap];0.91[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs17154220	1.00[ASN][1000 genomes]
rs17154227	1.00[CHB][hapmap]
rs17596862	1.00[CHB][hapmap]
rs17597065	1.00[CHB][hapmap]
rs1938690	1.00[CHB][hapmap]
rs2298589	1.00[JPT][hapmap];0.86[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs2508335	1.00[CHB][hapmap]
rs2509274	1.00[CHB][hapmap]
rs2509275	1.00[CHB][hapmap]
rs2509279	1.00[CHB][hapmap]
rs2509290	1.00[CHB][hapmap]
rs2509730	1.00[CHB][hapmap]
rs2927184	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs35211634	1.00[CHB][hapmap]
rs3781792	1.00[CHB][hapmap];0.82[AMR][1000 genomes]
rs3862660	0.82[AMR][1000 genomes]
rs41340150	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs41384548	1.00[CHB][hapmap];1.00[MEX][hapmap]
rs4356243	1.00[CHB][hapmap]
rs4393334	1.00[CHB][hapmap]
rs472177	1.00[CHB][hapmap]
rs473979	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs475145	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs478167	1.00[CHB][hapmap]
rs482355	1.00[CHB][hapmap]
rs482356	1.00[CHB][hapmap]
rs485803	1.00[CHB][hapmap]
rs496492	1.00[EUR][1000 genomes]
rs498099	1.00[CHB][hapmap]
rs504016	1.00[CHB][hapmap]
rs506384	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs508411	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs512194	1.00[CHB][hapmap]
rs513979	1.00[CHB][hapmap]
rs516912	1.00[CHB][hapmap]
rs519605	1.00[CHB][hapmap]
rs520622	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[EUR][1000 genomes]
rs522957	1.00[EUR][1000 genomes]
rs523016	1.00[CHB][hapmap]
rs523932	1.00[EUR][1000 genomes]
rs524102	1.00[CHB][hapmap]
rs528525	1.00[CHB][hapmap]
rs529270	1.00[CHB][hapmap]
rs533166	1.00[CHB][hapmap]
rs536544	1.00[CHB][hapmap]
rs537595	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[EUR][1000 genomes]
rs540684	1.00[CHB][hapmap]
rs548163	1.00[EUR][1000 genomes]
rs549086	1.00[CHB][hapmap]
rs552601	1.00[CHB][hapmap]
rs554848	1.00[CHB][hapmap];1.00[MEX][hapmap]
rs555251	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs573592	1.00[CHB][hapmap]
rs577224	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs579373	1.00[CHB][hapmap]
rs58169611	0.82[AMR][1000 genomes]
rs59057725	0.97[AFR][1000 genomes];0.90[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs60094706	0.82[AMR][1000 genomes]
rs60628632	0.84[AFR][1000 genomes];0.90[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs61370741	0.97[AFR][1000 genomes];0.90[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs61463035	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61636608	0.82[AMR][1000 genomes]
rs7114773	0.82[AMR][1000 genomes]
rs7119778	1.00[CHB][hapmap];0.82[AMR][1000 genomes]
rs7123969	1.00[CHB][hapmap];1.00[MEX][hapmap]
rs7126593	1.00[CHB][hapmap]
rs7131059	1.00[CHB][hapmap];0.82[AMR][1000 genomes]
rs73488804	1.00[EUR][1000 genomes]
rs73488834	1.00[EUR][1000 genomes]
rs7927187	1.00[EUR][1000 genomes]
rs7933970	0.82[AMR][1000 genomes]
rs7937245	1.00[CHB][hapmap];1.00[JPT][hapmap];0.86[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs7937684	1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs7946152	0.82[AMR][1000 genomes]
rs7947036	1.00[CHB][hapmap];0.82[AMR][1000 genomes]
rs7947514	1.00[CHB][hapmap];1.00[MEX][hapmap]
rs7947985	1.00[CEU][hapmap]
rs7952024	1.00[CHB][hapmap];1.00[MEX][hapmap];0.82[AMR][1000 genomes]

No data

Chromatin state (count:117 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:59524600-59573800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
2	chr11:59534600-59571600	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
3	chr11:59537600-59570400	Weak transcription	Fetal Kidney	kidney
4	chr11:59541000-59573600	Weak transcription	Primary T helper cells PMA-I stimulated	--
5	chr11:59542200-59571400	Weak transcription	Thymus	Thymus
6	chr11:59544400-59573200	Weak transcription	Psoas Muscle	Psoas
7	chr11:59551400-59572800	Weak transcription	Dnd41	blood
8	chr11:59551600-59573600	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
9	chr11:59551600-59576600	Weak transcription	Primary T killer memory cells from peripheral blood	blood
10	chr11:59551600-59577200	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
11	chr11:59552000-59573000	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
12	chr11:59554400-59569000	Strong transcription	HUES6 Cell Line	embryonic stem cell
13	chr11:59554600-59569000	Strong transcription	HUES64 Cell Line	embryonic stem cell
14	chr11:59554800-59576400	Strong transcription	Primary monocytes fromperipheralblood	blood
15	chr11:59554800-59576400	Strong transcription	Monocytes-CD14+_RO01746	blood
16	chr11:59555000-59573800	Weak transcription	Small Intestine	intestine
17	chr11:59555000-59576800	Strong transcription	Primary neutrophils fromperipheralblood	blood
18	chr11:59555600-59569600	Weak transcription	Right Atrium	heart
19	chr11:59555600-59576600	Strong transcription	Placenta	Placenta
20	chr11:59555800-59569000	Strong transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
21	chr11:59555800-59569200	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
22	chr11:59555800-59573600	Weak transcription	HSMM	muscle
23	chr11:59556000-59577000	Weak transcription	Fetal Heart	heart
24	chr11:59556400-59569000	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
25	chr11:59556400-59569400	Strong transcription	Breast Myoepithelial Primary Cells	Breast
26	chr11:59558800-59571800	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
27	chr11:59559800-59571400	Weak transcription	Primary T cells fromperipheralblood	blood
28	chr11:59561000-59573600	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
29	chr11:59561000-59573800	Weak transcription	Placenta Amnion	Placenta Amnion
30	chr11:59561200-59571600	Weak transcription	Primary T helper cells fromperipheralblood	blood
31	chr11:59561600-59573000	Weak transcription	Brain Germinal Matrix	brain
32	chr11:59561800-59573000	Weak transcription	Fetal Muscle Trunk	muscle
33	chr11:59562200-59571000	Weak transcription	Fetal Muscle Leg	muscle
34	chr11:59562400-59571400	Weak transcription	NH-A	brain
35	chr11:59562600-59571800	Weak transcription	Fetal Thymus	thymus
36	chr11:59562800-59569400	Weak transcription	Osteobl	bone
37	chr11:59563400-59569600	Weak transcription	Brain Angular Gyrus	brain
38	chr11:59563400-59569600	Weak transcription	Brain Inferior Temporal Lobe	brain
39	chr11:59563400-59570600	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
40	chr11:59563400-59571600	Weak transcription	iPS-15b Cell Line	embryonic stem cell
41	chr11:59563400-59573800	Weak transcription	HSMMtube	muscle
42	chr11:59563600-59569000	Weak transcription	Pancreatic Islets	Pancreatic Islet
43	chr11:59563600-59570400	Weak transcription	Primary B cells from peripheral blood	blood
44	chr11:59563600-59573000	Weak transcription	Esophagus	oesophagus
45	chr11:59563600-59573600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
46	chr11:59563800-59569200	Weak transcription	Muscle Satellite Cultured Cells	--
47	chr11:59563800-59569400	Weak transcription	Brain Substantia Nigra	brain
48	chr11:59563800-59569400	Weak transcription	K562	blood
49	chr11:59563800-59569600	Weak transcription	Brain Hippocampus Middle	brain
50	chr11:59563800-59569600	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain

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