Variant report

Variant	rs7123969
Chromosome Location	chr11:59595357-59595358
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr11:59594144..59598152-chr11:59598914..59603487,5	K562	blood:
2	chr11:59590610..59592173-chr11:59593790..59596614,2	K562	blood:

Variant related genes	Relation type
ENSG00000134812	Chromatin interaction

Extended variants
information (count: 157 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:157)

rs_ID	r²[population]
rs10501380	1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1121991	0.90[EUR][1000 genomes]
rs11230037	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[TSI][hapmap];0.86[EUR][1000 genomes]
rs1151063	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[TSI][hapmap];0.98[EUR][1000 genomes]
rs1151064	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[TSI][hapmap];0.98[EUR][1000 genomes]
rs11821333	0.94[EUR][1000 genomes]
rs11821465	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[TSI][hapmap];0.86[EUR][1000 genomes]
rs12272588	0.90[EUR][1000 genomes]
rs12278859	0.86[EUR][1000 genomes]
rs12280606	0.86[CEU][hapmap];1.00[CHB][hapmap];0.88[JPT][hapmap];0.86[EUR][1000 genomes]
rs12285828	0.88[EUR][1000 genomes]
rs12287696	1.00[TSI][hapmap]
rs12287975	0.82[EUR][1000 genomes]
rs12289162	0.86[EUR][1000 genomes]
rs12290453	1.00[TSI][hapmap]
rs12292682	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.90[EUR][1000 genomes]
rs1287111	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[TSI][hapmap];0.98[EUR][1000 genomes]
rs1290457	0.94[EUR][1000 genomes]
rs1290459	0.94[EUR][1000 genomes]
rs17046	0.94[EUR][1000 genomes]
rs17154025	1.00[CHB][hapmap]
rs17154029	0.94[EUR][1000 genomes]
rs17154134	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17154138	0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17154142	1.00[CHB][hapmap]
rs17154146	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17154149	0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17154157	1.00[CEU][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17154165	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17154169	0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17154175	0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17154180	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17154195	0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17154200	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[TSI][hapmap];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17154203	1.00[CHB][hapmap];1.00[MEX][hapmap]
rs17154205	1.00[CHB][hapmap]
rs17154216	1.00[CHB][hapmap]
rs17154222	0.99[AFR][1000 genomes];0.91[AMR][1000 genomes];0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs17154227	0.94[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.91[LWK][hapmap];0.96[MKK][hapmap];1.00[TSI][hapmap];0.96[YRI][hapmap];0.95[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17154234	1.00[CEU][hapmap];1.00[TSI][hapmap]
rs17510841	1.00[TSI][hapmap]
rs17593836	1.00[TSI][hapmap]
rs17596359	1.00[TSI][hapmap]
rs17596862	1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[TSI][hapmap]
rs17597065	1.00[CHB][hapmap];0.87[CHD][hapmap];1.00[GIH][hapmap];1.00[TSI][hapmap]
rs17597092	1.00[TSI][hapmap]
rs1938690	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[TSI][hapmap];0.86[EUR][1000 genomes]
rs2186597	0.90[EUR][1000 genomes]
rs2508335	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs2509274	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[TSI][hapmap];0.98[EUR][1000 genomes]
rs2509275	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[TSI][hapmap];0.96[EUR][1000 genomes]
rs2509276	0.98[EUR][1000 genomes]
rs2509279	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs2509290	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.94[EUR][1000 genomes]
rs2509730	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.82[YRI][hapmap];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2927182	0.83[EUR][1000 genomes]
rs2927183	0.94[EUR][1000 genomes]
rs2927184	1.00[CHB][hapmap]
rs2957223	0.94[EUR][1000 genomes]
rs3110322	0.94[EUR][1000 genomes]
rs3132748	0.94[EUR][1000 genomes]
rs34350918	0.86[EUR][1000 genomes]
rs35211634	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[TSI][hapmap]
rs3781792	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3781793	0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3862660	0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs41340150	1.00[CHB][hapmap]
rs41384548	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4301803	0.90[EUR][1000 genomes]
rs4356243	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[YRI][hapmap];0.95[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4393334	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.90[EUR][1000 genomes]
rs4515985	0.90[EUR][1000 genomes]
rs472177	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[TSI][hapmap];0.94[EUR][1000 genomes]
rs473087	0.94[EUR][1000 genomes]
rs473979	1.00[CHB][hapmap]
rs474844	0.94[EUR][1000 genomes]
rs475145	1.00[CHB][hapmap]
rs475706	0.94[EUR][1000 genomes]
rs478167	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.82[YRI][hapmap];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs479264	0.83[EUR][1000 genomes]
rs482355	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.88[MKK][hapmap];1.00[TSI][hapmap];0.98[EUR][1000 genomes]
rs482356	0.84[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.85[LWK][hapmap];0.89[MKK][hapmap];1.00[TSI][hapmap];0.85[YRI][hapmap];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs484814	0.83[EUR][1000 genomes]
rs484895	0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs485008	0.98[EUR][1000 genomes]
rs485803	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs486587	0.98[EUR][1000 genomes]
rs492652	0.94[EUR][1000 genomes]
rs497596	0.83[EUR][1000 genomes]
rs498099	1.00[CHB][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[TSI][hapmap]
rs498388	0.94[EUR][1000 genomes]
rs504016	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.98[EUR][1000 genomes]
rs506384	1.00[CHB][hapmap]
rs507235	0.98[EUR][1000 genomes]
rs508411	1.00[CHB][hapmap]
rs510122	0.98[EUR][1000 genomes]
rs511785	0.98[EUR][1000 genomes]
rs511957	0.94[EUR][1000 genomes]
rs512194	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.85[LWK][hapmap];0.85[MKK][hapmap];1.00[TSI][hapmap];0.90[EUR][1000 genomes]
rs512695	0.98[EUR][1000 genomes]
rs513979	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs516912	0.84[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];0.85[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.85[LWK][hapmap];0.89[MKK][hapmap];0.82[YRI][hapmap];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs519605	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.98[EUR][1000 genomes]
rs520622	1.00[CHB][hapmap]
rs521330	0.98[EUR][1000 genomes]
rs523016	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[TSI][hapmap];0.98[EUR][1000 genomes]
rs524102	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs528525	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.82[YRI][hapmap];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs529270	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[TSI][hapmap];0.98[EUR][1000 genomes]
rs533166	1.00[CHB][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[TSI][hapmap];0.83[EUR][1000 genomes]
rs536544	1.00[CHB][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[TSI][hapmap];0.83[EUR][1000 genomes]
rs537595	1.00[CHB][hapmap]
rs537625	0.94[EUR][1000 genomes]
rs540684	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[TSI][hapmap];0.94[EUR][1000 genomes]
rs549086	1.00[CHB][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[TSI][hapmap];0.83[EUR][1000 genomes]
rs550189	0.94[EUR][1000 genomes]
rs552601	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[TSI][hapmap];0.94[EUR][1000 genomes]
rs554149	0.94[EUR][1000 genomes]
rs554848	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs555175	0.98[EUR][1000 genomes]
rs555251	1.00[CHB][hapmap]
rs563800	0.83[EUR][1000 genomes]
rs565983	0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs567485	0.98[EUR][1000 genomes]
rs567603	1.00[CEU][hapmap];1.00[JPT][hapmap];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs569326	0.98[EUR][1000 genomes]
rs573592	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.82[YRI][hapmap];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs57529518	0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs577224	1.00[CHB][hapmap]
rs57871852	0.98[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs579192	0.94[EUR][1000 genomes]
rs579373	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.88[MKK][hapmap];1.00[TSI][hapmap];0.98[EUR][1000 genomes]
rs580242	0.94[EUR][1000 genomes]
rs58169611	0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs58775794	0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs60009036	0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs60094706	0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61636608	0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7112355	1.00[TSI][hapmap]
rs7114773	1.00[CEU][hapmap];1.00[JPT][hapmap];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7117509	1.00[CEU][hapmap];1.00[TSI][hapmap];0.83[EUR][1000 genomes]
rs7119778	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7126593	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.90[EUR][1000 genomes]
rs7131059	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73486962	0.86[EUR][1000 genomes]
rs73486971	0.86[EUR][1000 genomes]
rs73486979	0.86[EUR][1000 genomes]
rs73486988	0.90[EUR][1000 genomes]
rs73486997	0.90[EUR][1000 genomes]
rs7933970	0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7937245	1.00[CHB][hapmap]
rs7937684	1.00[CHB][hapmap]
rs7941643	0.94[EUR][1000 genomes]
rs7946152	0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7947036	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7947514	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7952024	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]

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Chromatin state (count:0 , 50 per page) page:

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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