Variant report

Variant	rs17154234
Chromosome Location	chr11:59620206-59620207
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr11:59619737..59621924-chr11:59623514..59625671,2	K562	blood:
2	chr11:59619801..59622082-chr11:59633535..59636417,2	K562	blood:

Variant related genes	Relation type
ENSG00000134827	Chromatin interaction

Extended variants
information (count: 74 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:72)

rs_ID	r²[population]
rs10501380	1.00[TSI][hapmap]
rs11230036	1.00[CHD][hapmap];1.00[JPT][hapmap]
rs11230037	1.00[CEU][hapmap];1.00[GIH][hapmap];1.00[TSI][hapmap]
rs1151063	1.00[CEU][hapmap];1.00[TSI][hapmap]
rs1151064	1.00[CEU][hapmap];1.00[TSI][hapmap]
rs11821465	1.00[CEU][hapmap];1.00[GIH][hapmap];1.00[TSI][hapmap]
rs12276264	1.00[MEX][hapmap]
rs12287696	1.00[CHD][hapmap];1.00[JPT][hapmap];1.00[TSI][hapmap]
rs12290453	1.00[CHD][hapmap];1.00[JPT][hapmap];1.00[TSI][hapmap];1.00[ASN][1000 genomes]
rs12292682	1.00[CEU][hapmap]
rs1287111	1.00[CEU][hapmap];1.00[TSI][hapmap]
rs17154053	1.00[ASN][1000 genomes]
rs17154134	1.00[CEU][hapmap];1.00[TSI][hapmap]
rs17154146	1.00[CEU][hapmap];1.00[TSI][hapmap]
rs17154157	1.00[CEU][hapmap];1.00[TSI][hapmap]
rs17154165	1.00[CEU][hapmap];1.00[TSI][hapmap]
rs17154180	1.00[CEU][hapmap];1.00[TSI][hapmap]
rs17154200	1.00[CEU][hapmap];1.00[TSI][hapmap]
rs17154227	1.00[CEU][hapmap];1.00[TSI][hapmap]
rs17510841	1.00[CHD][hapmap];1.00[JPT][hapmap];1.00[TSI][hapmap];1.00[ASN][1000 genomes]
rs17511545	1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs17511686	1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs17594827	1.00[ASN][1000 genomes]
rs17596359	0.85[CHD][hapmap];1.00[JPT][hapmap];1.00[TSI][hapmap];1.00[ASN][1000 genomes]
rs17596862	1.00[TSI][hapmap]
rs17597065	1.00[TSI][hapmap]
rs17597092	1.00[TSI][hapmap];1.00[ASN][1000 genomes]
rs1938690	1.00[CEU][hapmap];1.00[TSI][hapmap]
rs2085962	1.00[ASN][1000 genomes]
rs2509274	1.00[CEU][hapmap];1.00[TSI][hapmap]
rs2509275	1.00[CEU][hapmap];1.00[TSI][hapmap]
rs2509290	1.00[CEU][hapmap]
rs2509730	1.00[CEU][hapmap]
rs35211634	1.00[CEU][hapmap];1.00[TSI][hapmap];0.89[EUR][1000 genomes]
rs3781792	1.00[CEU][hapmap]
rs41384548	1.00[CEU][hapmap];1.00[TSI][hapmap]
rs4356243	1.00[CEU][hapmap]
rs4393334	1.00[CEU][hapmap]
rs472177	1.00[CEU][hapmap];1.00[TSI][hapmap]
rs478167	1.00[CEU][hapmap]
rs482355	1.00[CEU][hapmap];1.00[TSI][hapmap]
rs482356	1.00[CEU][hapmap];1.00[TSI][hapmap]
rs498099	1.00[TSI][hapmap]
rs504016	1.00[CEU][hapmap]
rs512194	1.00[CEU][hapmap];1.00[TSI][hapmap]
rs516912	1.00[CEU][hapmap]
rs519605	1.00[CEU][hapmap]
rs523016	1.00[CEU][hapmap];1.00[TSI][hapmap]
rs528525	1.00[CEU][hapmap]
rs529270	1.00[CEU][hapmap];1.00[TSI][hapmap]
rs533166	1.00[TSI][hapmap]
rs536544	1.00[TSI][hapmap]
rs540684	1.00[CEU][hapmap];1.00[TSI][hapmap]
rs549086	1.00[TSI][hapmap]
rs552601	1.00[CEU][hapmap];1.00[TSI][hapmap]
rs554848	1.00[CEU][hapmap];1.00[TSI][hapmap]
rs567603	1.00[CEU][hapmap]
rs573592	1.00[CEU][hapmap]
rs579373	1.00[CEU][hapmap];1.00[TSI][hapmap]
rs7108731	1.00[ASN][1000 genomes]
rs7114773	1.00[CEU][hapmap]
rs7117032	1.00[MEX][hapmap]
rs7117509	1.00[CEU][hapmap];0.83[CHD][hapmap];1.00[JPT][hapmap];1.00[TSI][hapmap];1.00[ASN][1000 genomes]
rs7119530	1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs7119778	1.00[CEU][hapmap]
rs7123969	1.00[CEU][hapmap];1.00[TSI][hapmap]
rs7126593	1.00[CEU][hapmap]
rs7131059	1.00[CEU][hapmap]
rs7929816	1.00[JPT][hapmap]
rs7947036	1.00[CEU][hapmap]
rs7947514	1.00[CEU][hapmap];1.00[TSI][hapmap]
rs7952024	1.00[CEU][hapmap];1.00[TSI][hapmap]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv825935	chr11:59615227-59626656	Weak transcription Enhancers Genic enhancers Active TSS Flanking Active TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
2	nsv442233	chr11:59615391-59626011	Enhancers Weak transcription Flanking Active TSS Strong transcription Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs17154234	MS4A7	cis	lymphoblastoid	seeQTL

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:59614600-59622000	Weak transcription	iPS-15b Cell Line	embryonic stem cell
2	chr11:59614600-59624800	Weak transcription	HUES48 Cell Line	embryonic stem cell
3	chr11:59617000-59622400	Weak transcription	K562	blood
4	chr11:59618000-59624800	Weak transcription	Pancreas	Pancrea
5	chr11:59619600-59621200	Strong transcription	Primary neutrophils fromperipheralblood	blood

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