Variant report

Variant	rs17594827
Chromosome Location	chr11:59489158-59489159
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr11:59484717..59486991-chr11:59487647..59489651,2	K562	blood:
2	chr11:59483722..59486597-chr11:59487703..59490469,2	K562	blood:

Extended variants
information (count: 66 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:66)

rs_ID	r²[population]
rs10501380	1.00[CEU][hapmap]
rs11230019	0.89[EUR][1000 genomes]
rs11230036	1.00[CEU][hapmap];1.00[JPT][hapmap];0.94[EUR][1000 genomes]
rs12271110	0.89[EUR][1000 genomes]
rs12272999	0.89[EUR][1000 genomes]
rs12274820	0.80[EUR][1000 genomes]
rs12276505	1.00[CEU][hapmap]
rs12287696	1.00[CEU][hapmap];1.00[JPT][hapmap];0.94[EUR][1000 genomes]
rs12290453	1.00[CEU][hapmap];1.00[JPT][hapmap];0.83[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12291415	0.94[EUR][1000 genomes]
rs17154005	0.94[EUR][1000 genomes]
rs17154053	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17154234	1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs17508845	1.00[CEU][hapmap];1.00[JPT][hapmap];0.83[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs17509520	1.00[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs17510841	1.00[CEU][hapmap];1.00[JPT][hapmap];0.83[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17511545	1.00[CEU][hapmap];1.00[JPT][hapmap];0.83[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17511686	1.00[CEU][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17592880	0.83[AMR][1000 genomes]
rs17593682	1.00[CEU][hapmap];1.00[JPT][hapmap];0.83[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs17593836	1.00[CEU][hapmap];1.00[JPT][hapmap];0.83[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs17596359	1.00[CEU][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17596862	1.00[CEU][hapmap];0.86[EUR][1000 genomes]
rs17597065	1.00[CEU][hapmap];0.81[EUR][1000 genomes]
rs17597092	1.00[CEU][hapmap];0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2085962	0.83[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2447310	0.83[EUR][1000 genomes]
rs2508335	1.00[CEU][hapmap];0.83[EUR][1000 genomes]
rs2509279	1.00[CEU][hapmap];0.83[EUR][1000 genomes]
rs471369	0.83[EUR][1000 genomes]
rs472152	0.83[EUR][1000 genomes]
rs475800	0.87[EUR][1000 genomes]
rs477577	0.83[EUR][1000 genomes]
rs477729	0.83[EUR][1000 genomes]
rs481893	0.83[EUR][1000 genomes]
rs485803	1.00[CEU][hapmap];0.83[EUR][1000 genomes]
rs494110	0.83[EUR][1000 genomes]
rs496938	0.83[EUR][1000 genomes]
rs498099	1.00[CEU][hapmap];0.83[EUR][1000 genomes]
rs498299	0.83[EUR][1000 genomes]
rs499054	0.83[EUR][1000 genomes]
rs513979	1.00[CEU][hapmap];0.83[EUR][1000 genomes]
rs524102	1.00[CEU][hapmap];0.83[EUR][1000 genomes]
rs526672	0.83[EUR][1000 genomes]
rs533166	1.00[CEU][hapmap]
rs536544	1.00[CEU][hapmap]
rs538169	0.83[EUR][1000 genomes]
rs540989	0.87[EUR][1000 genomes]
rs549086	1.00[CEU][hapmap]
rs561029	0.83[EUR][1000 genomes]
rs562657	0.83[EUR][1000 genomes]
rs563267	0.83[EUR][1000 genomes]
rs581265	0.83[EUR][1000 genomes]
rs7101580	0.83[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs7108731	0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7112355	1.00[CEU][hapmap];1.00[JPT][hapmap];0.83[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs7117509	1.00[JPT][hapmap];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs7118051	1.00[JPT][hapmap]
rs7119530	1.00[CEU][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7130130	0.89[EUR][1000 genomes]
rs7924849	0.89[EUR][1000 genomes]
rs7929816	1.00[CEU][hapmap];1.00[JPT][hapmap];1.00[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs7948041	1.00[CEU][hapmap];1.00[JPT][hapmap];0.83[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs7948635	0.83[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs7952380	0.89[EUR][1000 genomes]
rs997788	1.00[AMR][1000 genomes];0.94[EUR][1000 genomes]

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:59478200-59489600	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
2	chr11:59488200-59489600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast

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