Variant report

Variant	rs12272999
Chromosome Location	chr11:59310017-59310018
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr11:59309329..59311189-chr11:59379194..59381372,2	K562	blood:

Extended variants
information (count: 54 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:52)

rs_ID	r²[population]
rs11230019	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11230036	1.00[CEU][hapmap];1.00[JPT][hapmap];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11230037	0.83[YRI][hapmap]
rs12271110	0.96[AFR][1000 genomes];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12274820	0.80[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12276505	1.00[CEU][hapmap];0.83[EUR][1000 genomes]
rs12278910	0.86[YRI][hapmap]
rs12280606	0.83[YRI][hapmap]
rs12287696	1.00[CEU][hapmap];1.00[JPT][hapmap];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12291415	0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12292682	0.87[YRI][hapmap]
rs1287449	0.81[EUR][1000 genomes]
rs1299800	0.86[YRI][hapmap]
rs17154005	0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17154053	0.89[EUR][1000 genomes]
rs17508845	1.00[CEU][hapmap];1.00[JPT][hapmap];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17509520	0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17592880	0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17593682	1.00[CEU][hapmap];1.00[JPT][hapmap];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17593836	1.00[CEU][hapmap];1.00[JPT][hapmap];0.94[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs17594827	0.89[EUR][1000 genomes]
rs1938690	0.86[YRI][hapmap]
rs4393334	0.90[YRI][hapmap]
rs472177	0.86[YRI][hapmap]
rs473490	0.86[YRI][hapmap]
rs485803	1.00[CEU][hapmap]
rs495564	0.86[YRI][hapmap]
rs498099	1.00[CEU][hapmap]
rs513979	1.00[CEU][hapmap]
rs524102	1.00[CEU][hapmap]
rs536910	0.87[YRI][hapmap]
rs550822	0.81[YRI][hapmap]
rs57397608	0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs579362	0.87[YRI][hapmap]
rs6591540	0.81[AFR][1000 genomes];0.89[AMR][1000 genomes];0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6591541	0.86[YRI][hapmap]
rs693110	0.86[YRI][hapmap]
rs7101580	0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7107183	0.85[AFR][1000 genomes];0.83[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs7112355	1.00[CEU][hapmap];1.00[JPT][hapmap];0.94[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs7116567	0.87[YRI][hapmap]
rs7118051	1.00[JPT][hapmap];0.97[YRI][hapmap];0.86[AFR][1000 genomes];0.83[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs7124813	0.87[YRI][hapmap]
rs7126593	0.87[YRI][hapmap]
rs7130130	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7924849	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7929816	1.00[CEU][hapmap];1.00[JPT][hapmap];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7948041	1.00[CEU][hapmap];1.00[JPT][hapmap];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7948635	0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7952380	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs8280	0.86[YRI][hapmap]
rs997788	0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1046084	chr11:59034871-59314519	Enhancers Active TSS Flanking Active TSS Weak transcription ZNF genes & repeats Bivalent Enhancer Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	24 gene(s)	inside rSNPs	diseases
2	nsv972925	chr11:59299418-59314660	Enhancers Active TSS Weak transcription Flanking Active TSS	Chromatin interactive region	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:9 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:59305400-59316600	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
2	chr11:59305600-59312200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
3	chr11:59305600-59312200	Weak transcription	iPS-15b Cell Line	embryonic stem cell
4	chr11:59305600-59312400	Weak transcription	Ovary	ovary
5	chr11:59305600-59317000	Weak transcription	Rectal Smooth Muscle	rectum
6	chr11:59305600-59317200	Weak transcription	Stomach Smooth Muscle	stomach
7	chr11:59305800-59312400	Weak transcription	A549	lung
8	chr11:59309400-59310400	Enhancers	Fetal Adrenal Gland	Adrenal Gland
9	chr11:59309800-59310200	Enhancers	K562	blood

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