Variant report

Variant	rs17154005
Chromosome Location	chr11:59433421-59433422
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr11:59432565..59434123-chr11:59436091..59437833,2	K562	blood:
2	chr11:59424561..59426606-chr11:59430205..59433871,3	K562	blood:
3	chr11:59427010..59429204-chr11:59432808..59435498,2	MCF-7	breast:
4	chr11:59331158..59335239-chr11:59432687..59436578,5	K562	blood:

Variant related genes	Relation type
ENSG00000255008	Chromatin interaction
ENSG00000255355	Chromatin interaction
ENSG00000166889	Chromatin interaction

Extended variants
information (count: 39 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:37)

rs_ID	r²[population]
rs11230019	0.81[AFR][1000 genomes];0.83[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11230036	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12271110	0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12272999	0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12274820	0.93[AFR][1000 genomes];0.83[AMR][1000 genomes];0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12287696	0.98[AFR][1000 genomes];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12290453	0.89[EUR][1000 genomes]
rs12291415	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17154053	0.94[EUR][1000 genomes]
rs17508845	0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17509520	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17510841	0.89[EUR][1000 genomes]
rs17511545	0.89[EUR][1000 genomes]
rs17511686	0.89[EUR][1000 genomes]
rs17592880	1.00[ASN][1000 genomes]
rs17593682	0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17593836	1.00[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs17594827	0.94[EUR][1000 genomes]
rs17596359	0.89[EUR][1000 genomes]
rs17596862	0.81[EUR][1000 genomes]
rs2085962	0.89[EUR][1000 genomes]
rs475800	0.83[EUR][1000 genomes]
rs540989	0.83[EUR][1000 genomes]
rs57397608	0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6591540	1.00[ASN][1000 genomes]
rs7101580	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7107183	1.00[ASN][1000 genomes]
rs7112355	1.00[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs7118051	1.00[ASN][1000 genomes]
rs7119530	0.89[EUR][1000 genomes]
rs7130130	0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7924849	0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7929816	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7948041	0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7948635	0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7952380	0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs997788	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv1802782	chr11:59383323-59448068	Genic enhancers Flanking Active TSS Weak transcription Enhancers Strong transcription Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	30 gene(s)	inside rSNPs	diseases
2	nsv819971	chr11:59431720-59434566	Transcr. at gene 5' and 3' Genic enhancers Strong transcription Weak transcription Enhancers Active TSS Flanking Active TSS	TF binding region Chromatin interactive region	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:126 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:59395600-59434600	Weak transcription	Stomach Mucosa	stomach
2	chr11:59402200-59434000	Strong transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
3	chr11:59402600-59434000	Strong transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
4	chr11:59402600-59434000	Strong transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
5	chr11:59402600-59434200	Strong transcription	Fetal Muscle Trunk	muscle
6	chr11:59402600-59434400	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
7	chr11:59402800-59434200	Strong transcription	Duodenum Mucosa	Duodenum
8	chr11:59402800-59434200	Strong transcription	Fetal Thymus	thymus
9	chr11:59402800-59434400	Strong transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
10	chr11:59403200-59434600	Strong transcription	ES-UCSF4 Cell Line	embryonic stem cell
11	chr11:59403400-59434400	Strong transcription	iPS-20b Cell Line	embryonic stem cell
12	chr11:59403400-59434400	Strong transcription	Cortex derived primary cultured neurospheres	brain
13	chr11:59403600-59434600	Strong transcription	HUES48 Cell Line	embryonic stem cell
14	chr11:59404000-59434600	Strong transcription	iPS-18 Cell Line	embryonic stem cell
15	chr11:59404200-59434600	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
16	chr11:59404200-59434600	Strong transcription	NH-A	brain
17	chr11:59408200-59434400	Strong transcription	Rectal Mucosa Donor 29	rectum
18	chr11:59409200-59435400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
19	chr11:59413000-59434000	Strong transcription	Hela-S3	cervix
20	chr11:59413400-59434800	Strong transcription	HUES64 Cell Line	embryonic stem cell
21	chr11:59413600-59434800	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
22	chr11:59414400-59434400	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
23	chr11:59415400-59435400	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
24	chr11:59424200-59434600	Weak transcription	Fetal Heart	heart
25	chr11:59424800-59434400	Weak transcription	Pancreatic Islets	Pancreatic Islet
26	chr11:59425600-59435000	Weak transcription	Small Intestine	intestine
27	chr11:59425600-59435600	Weak transcription	Aorta	Aorta
28	chr11:59425600-59435600	Weak transcription	Gastric	stomach
29	chr11:59425800-59435000	Weak transcription	iPS-15b Cell Line	embryonic stem cell
30	chr11:59425800-59435400	Weak transcription	Pancreas	Pancrea
31	chr11:59426200-59435400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
32	chr11:59426200-59435400	Weak transcription	Esophagus	oesophagus
33	chr11:59426400-59435000	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
34	chr11:59426800-59435000	Weak transcription	Right Ventricle	heart
35	chr11:59427000-59435400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
36	chr11:59428200-59434400	Strong transcription	Muscle Satellite Cultured Cells	--
37	chr11:59428400-59434200	Strong transcription	HSMM	muscle
38	chr11:59428400-59434600	Strong transcription	HUES6 Cell Line	embryonic stem cell
39	chr11:59428400-59435200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
40	chr11:59428600-59434000	Strong transcription	Liver	Liver
41	chr11:59428600-59434400	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
42	chr11:59428600-59434400	Strong transcription	Rectal Mucosa Donor 31	rectum
43	chr11:59428600-59435000	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
44	chr11:59428600-59435200	Weak transcription	H9 Cell Line	embryonic stem cell
45	chr11:59428800-59434200	Strong transcription	Primary T helper 17 cells PMA-I stimulated	--
46	chr11:59428800-59434400	Strong transcription	Placenta	Placenta
47	chr11:59428800-59434600	Strong transcription	HUVEC	blood vessel
48	chr11:59429000-59434200	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
49	chr11:59429000-59434400	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
50	chr11:59429200-59434200	Strong transcription	Breast Myoepithelial Primary Cells	Breast

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