Variant report

Variant	rs7118051
Chromosome Location	chr11:59296723-59296724
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr11:59290077..59292026-chr11:59294702..59297110,2	K562	blood:

Extended variants
information (count: 55 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:54)

rs_ID	r²[population]
rs11230019	1.00[ASN][1000 genomes]
rs11230020	1.00[CEU][hapmap]
rs11230036	1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs11230037	1.00[CEU][hapmap];0.80[YRI][hapmap]
rs11821465	1.00[CEU][hapmap]
rs12271110	0.82[AFR][1000 genomes];0.89[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs12272999	0.86[AFR][1000 genomes];0.83[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs12274820	1.00[ASN][1000 genomes]
rs12278910	1.00[CEU][hapmap];0.83[YRI][hapmap]
rs12280606	0.86[CEU][hapmap]
rs12287696	1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs12289921	1.00[CEU][hapmap]
rs12291415	1.00[ASN][1000 genomes]
rs12292682	1.00[CEU][hapmap];0.84[YRI][hapmap]
rs12797334	1.00[CEU][hapmap]
rs1299800	1.00[CEU][hapmap];0.83[YRI][hapmap]
rs17153910	1.00[CEU][hapmap]
rs17154005	1.00[ASN][1000 genomes]
rs17508845	1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs17509520	1.00[ASN][1000 genomes]
rs17592880	0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17593682	1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs17593836	1.00[JPT][hapmap];0.87[ASN][1000 genomes]
rs1938690	1.00[CEU][hapmap];0.83[YRI][hapmap]
rs2509290	1.00[CEU][hapmap]
rs4393334	1.00[CEU][hapmap];0.87[YRI][hapmap]
rs472177	1.00[CEU][hapmap];0.83[YRI][hapmap]
rs473490	1.00[CEU][hapmap];0.83[YRI][hapmap]
rs488331	1.00[CEU][hapmap]
rs495564	1.00[CEU][hapmap];0.83[YRI][hapmap]
rs536910	0.84[YRI][hapmap]
rs540684	1.00[CEU][hapmap]
rs550822	0.85[CEU][hapmap]
rs553700	1.00[CEU][hapmap]
rs567994	1.00[CEU][hapmap]
rs57397608	0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs579362	1.00[CEU][hapmap];0.84[YRI][hapmap]
rs6591540	0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6591541	1.00[CEU][hapmap];0.83[YRI][hapmap]
rs693110	1.00[CEU][hapmap];0.86[YRI][hapmap]
rs7101580	1.00[ASN][1000 genomes]
rs7107183	0.91[AFR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7112355	1.00[JPT][hapmap];0.87[ASN][1000 genomes]
rs7116567	1.00[CEU][hapmap];0.84[YRI][hapmap]
rs7124813	1.00[CEU][hapmap];0.84[YRI][hapmap]
rs7126593	1.00[CEU][hapmap];0.84[YRI][hapmap]
rs7130130	1.00[ASN][1000 genomes]
rs7924849	1.00[ASN][1000 genomes]
rs7929816	1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs7948041	1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs7948635	1.00[ASN][1000 genomes]
rs7952380	1.00[ASN][1000 genomes]
rs8280	1.00[CEU][hapmap];0.83[YRI][hapmap]
rs997788	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1046084	chr11:59034871-59314519	Enhancers Active TSS Flanking Active TSS Weak transcription ZNF genes & repeats Bivalent Enhancer Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	24 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:16 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:59294400-59297000	Enhancers	iPS-18 Cell Line	embryonic stem cell
2	chr11:59294600-59297000	Enhancers	HUES48 Cell Line	embryonic stem cell
3	chr11:59294600-59297000	Enhancers	HUES64 Cell Line	embryonic stem cell
4	chr11:59294600-59297000	Enhancers	iPS-20b Cell Line	embryonic stem cell
5	chr11:59294600-59297200	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
6	chr11:59295200-59297000	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
7	chr11:59295400-59296800	Enhancers	H1 Cell Line	embryonic stem cell
8	chr11:59295600-59296800	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
9	chr11:59296000-59296800	Flanking Active TSS	H9 Derived Neuron Cultured Cells	ES cell derived
10	chr11:59296200-59296800	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
11	chr11:59296200-59296800	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
12	chr11:59296200-59297000	Enhancers	Cortex derived primary cultured neurospheres	brain
13	chr11:59296200-59304800	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
14	chr11:59296400-59296800	Enhancers	ES-I3 Cell Line	embryonic stem cell
15	chr11:59296400-59296800	Enhancers	HUES6 Cell Line	embryonic stem cell
16	chr11:59296600-59296800	Flanking Bivalent TSS/Enh	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived

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