Variant report

Variant	rs693110
Chromosome Location	chr11:59327942-59327943
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:11)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:11 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr11:59326882..59329448-chr11:59381512..59384615,3	MCF-7	breast:
2	chr11:59327473..59329060-chr11:59341857..59344264,2	K562	blood:
3	chr11:59326302..59328459-chr11:59344498..59347329,2	K562	blood:
4	chr11:59327282..59329404-chr11:59605781..59608762,2	K562	blood:
5	chr11:59327897..59328402-chr22:18121382..18122026,2	Hela-S3	cervix:
6	chr11:59327559..59329707-chr11:59434629..59437486,4	K562	blood:
7	chr1:117112976..117113503-chr11:59327920..59328900,2	Hela-S3	cervix:
8	chr11:59327816..59329707-chr11:59434629..59437740,3	K562	blood:
9	chr11:59327475..59330060-chr11:59381628..59383602,2	K562	blood:
10	chr11:59318069..59320155-chr11:59327909..59330794,2	MCF-7	breast:
11	chr11:59327752..59328252-chr17:78120476..78120984,2	Hela-S3	cervix:

No data

Variant related genes	Relation type
ENSG00000099968	Chromatin interaction
ENSG00000166889	Chromatin interaction
ENSG00000255139	Chromatin interaction
ENSG00000110048	Chromatin interaction
ENSG00000255355	Chromatin interaction
ENSG00000141543	Chromatin interaction

Extended variants
information (count: 164 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:164)

rs_ID	r²[population]
rs1121991	0.88[EUR][1000 genomes]
rs11230020	1.00[CEU][hapmap];1.00[JPT][hapmap];0.86[YRI][hapmap];0.80[AFR][1000 genomes];0.98[AMR][1000 genomes];0.92[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs11230027	0.83[AFR][1000 genomes];0.84[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs11230037	1.00[CEU][hapmap];1.00[JPT][hapmap];0.95[YRI][hapmap];0.92[EUR][1000 genomes]
rs1151063	1.00[CEU][hapmap];1.00[JPT][hapmap];0.80[EUR][1000 genomes]
rs1151064	1.00[CEU][hapmap];1.00[JPT][hapmap];0.80[EUR][1000 genomes]
rs11821333	0.84[EUR][1000 genomes]
rs11821465	1.00[CEU][hapmap];1.00[JPT][hapmap];0.86[YRI][hapmap];0.92[EUR][1000 genomes]
rs12271188	0.82[AFR][1000 genomes];0.98[AMR][1000 genomes];0.96[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs12272588	0.88[EUR][1000 genomes]
rs12276505	1.00[CHB][hapmap];0.82[JPT][hapmap];0.94[AMR][1000 genomes];0.85[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs12278859	0.92[EUR][1000 genomes]
rs12278910	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs12280606	0.86[CEU][hapmap];0.84[JPT][hapmap];0.95[YRI][hapmap];0.92[EUR][1000 genomes]
rs12281969	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs12285828	0.86[EUR][1000 genomes]
rs12287975	0.88[EUR][1000 genomes]
rs12289162	0.92[EUR][1000 genomes]
rs12289921	1.00[CEU][hapmap];1.00[CHB][hapmap];0.82[JPT][hapmap];0.90[YRI][hapmap];0.98[AMR][1000 genomes];0.96[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs12292682	1.00[CEU][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.88[EUR][1000 genomes]
rs12797334	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.84[YRI][hapmap];0.90[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs1287111	1.00[CEU][hapmap];1.00[JPT][hapmap];0.80[EUR][1000 genomes]
rs1287441	0.95[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1287442	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1287446	0.83[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1287448	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs1287449	0.84[AMR][1000 genomes];0.83[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs1290457	0.84[EUR][1000 genomes]
rs1290459	0.84[EUR][1000 genomes]
rs1290466	0.94[AMR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1299800	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs1530995	1.00[CHB][hapmap];0.82[JPT][hapmap]
rs17046	0.84[EUR][1000 genomes]
rs17153910	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17153962	1.00[CHB][hapmap];0.82[JPT][hapmap]
rs17153982	1.00[CHB][hapmap];0.82[JPT][hapmap]
rs17154025	0.82[JPT][hapmap]
rs17154029	0.84[EUR][1000 genomes]
rs17154134	0.80[EUR][1000 genomes]
rs17154138	0.80[EUR][1000 genomes]
rs17154146	0.80[EUR][1000 genomes]
rs17154149	0.80[EUR][1000 genomes]
rs17154157	0.80[EUR][1000 genomes]
rs17154165	0.80[EUR][1000 genomes]
rs1783212	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1938690	1.00[CEU][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.92[EUR][1000 genomes]
rs2186597	0.88[EUR][1000 genomes]
rs2298868	1.00[CHB][hapmap];0.82[JPT][hapmap]
rs2298869	1.00[CHB][hapmap];0.82[JPT][hapmap]
rs2508335	1.00[JPT][hapmap]
rs2509274	1.00[CEU][hapmap];1.00[JPT][hapmap];0.80[EUR][1000 genomes]
rs2509275	1.00[CEU][hapmap];1.00[JPT][hapmap]
rs2509276	0.80[EUR][1000 genomes]
rs2509279	1.00[JPT][hapmap]
rs2509290	1.00[CEU][hapmap];1.00[JPT][hapmap];0.83[YRI][hapmap];0.84[EUR][1000 genomes]
rs2927183	0.84[EUR][1000 genomes]
rs3015969	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3019740	0.96[AMR][1000 genomes];0.96[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs3110322	0.84[EUR][1000 genomes]
rs3132748	0.84[EUR][1000 genomes]
rs34350918	0.92[EUR][1000 genomes]
rs3781793	0.80[EUR][1000 genomes]
rs3862660	0.80[EUR][1000 genomes]
rs41340150	0.82[JPT][hapmap]
rs41384548	0.80[EUR][1000 genomes]
rs4301803	0.88[EUR][1000 genomes]
rs4393334	1.00[CEU][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.88[EUR][1000 genomes]
rs4515985	0.88[EUR][1000 genomes]
rs472177	1.00[CEU][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.84[EUR][1000 genomes]
rs473087	0.84[EUR][1000 genomes]
rs473490	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs473979	0.82[JPT][hapmap]
rs474844	0.84[EUR][1000 genomes]
rs475706	0.84[EUR][1000 genomes]
rs478167	0.80[EUR][1000 genomes]
rs482355	1.00[CEU][hapmap];1.00[JPT][hapmap];0.80[EUR][1000 genomes]
rs485008	0.80[EUR][1000 genomes]
rs485803	1.00[JPT][hapmap]
rs486587	0.80[EUR][1000 genomes]
rs486952	1.00[CHB][hapmap];0.82[JPT][hapmap]
rs488331	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.86[YRI][hapmap];0.84[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs492652	0.84[EUR][1000 genomes]
rs4939294	0.87[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs495564	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs498099	1.00[JPT][hapmap]
rs498388	0.84[EUR][1000 genomes]
rs504016	1.00[CEU][hapmap];1.00[JPT][hapmap];0.80[EUR][1000 genomes]
rs506384	0.82[JPT][hapmap]
rs507235	0.80[EUR][1000 genomes]
rs508411	0.82[JPT][hapmap]
rs510122	0.80[EUR][1000 genomes]
rs510249	0.88[AFR][1000 genomes];0.98[AMR][1000 genomes];0.94[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs511785	0.80[EUR][1000 genomes]
rs511957	0.84[EUR][1000 genomes]
rs512194	1.00[CEU][hapmap];1.00[JPT][hapmap]
rs512695	0.80[EUR][1000 genomes]
rs513979	1.00[JPT][hapmap]
rs516912	0.80[EUR][1000 genomes]
rs518026	1.00[CHB][hapmap]
rs519605	1.00[CEU][hapmap];1.00[JPT][hapmap];0.80[EUR][1000 genomes]
rs519865	0.88[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs519873	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs520622	0.82[JPT][hapmap]
rs521330	0.80[EUR][1000 genomes]
rs523016	0.80[EUR][1000 genomes]
rs524102	1.00[JPT][hapmap]
rs528525	0.80[EUR][1000 genomes]
rs529270	1.00[CEU][hapmap];1.00[JPT][hapmap];0.80[EUR][1000 genomes]
rs532838	0.85[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs533166	1.00[JPT][hapmap]
rs536544	1.00[JPT][hapmap]
rs536910	1.00[CHB][hapmap];1.00[YRI][hapmap];0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs537595	0.82[JPT][hapmap]
rs537625	0.84[EUR][1000 genomes]
rs540684	1.00[CEU][hapmap];1.00[JPT][hapmap];0.81[YRI][hapmap];0.84[EUR][1000 genomes]
rs549086	1.00[JPT][hapmap]
rs550189	0.84[EUR][1000 genomes]
rs550822	0.85[CEU][hapmap];1.00[JPT][hapmap];0.93[YRI][hapmap];0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs552601	1.00[CEU][hapmap];1.00[JPT][hapmap];0.84[EUR][1000 genomes]
rs553700	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.83[YRI][hapmap];0.85[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs554149	0.84[EUR][1000 genomes]
rs554848	0.80[EUR][1000 genomes]
rs555175	0.80[EUR][1000 genomes]
rs555251	0.82[JPT][hapmap]
rs55667192	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs559150	1.00[CHB][hapmap];0.82[JPT][hapmap]
rs561604	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs563276	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs565482	1.00[CHB][hapmap]
rs565983	0.80[EUR][1000 genomes]
rs567485	0.80[EUR][1000 genomes]
rs567994	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.86[YRI][hapmap];0.85[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs569326	0.80[EUR][1000 genomes]
rs573592	0.80[EUR][1000 genomes]
rs57529518	0.80[EUR][1000 genomes]
rs57871852	0.80[EUR][1000 genomes]
rs579192	0.84[EUR][1000 genomes]
rs579362	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap]
rs579373	1.00[CEU][hapmap];1.00[JPT][hapmap];0.80[EUR][1000 genomes]
rs580242	0.84[EUR][1000 genomes]
rs58169611	0.80[EUR][1000 genomes]
rs58775794	0.80[EUR][1000 genomes]
rs60009036	0.80[EUR][1000 genomes]
rs60094706	0.80[EUR][1000 genomes]
rs61636608	0.80[EUR][1000 genomes]
rs6591540	0.85[EUR][1000 genomes]
rs6591541	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7116567	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7118051	1.00[CEU][hapmap];0.86[YRI][hapmap]
rs7119778	0.80[EUR][1000 genomes]
rs7124813	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7126593	1.00[CEU][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.88[EUR][1000 genomes]
rs73486934	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs73486962	0.92[EUR][1000 genomes]
rs73486971	0.92[EUR][1000 genomes]
rs73486979	0.92[EUR][1000 genomes]
rs73486988	0.88[EUR][1000 genomes]
rs73486997	0.88[EUR][1000 genomes]
rs7939527	0.82[JPT][hapmap]
rs7941643	0.84[EUR][1000 genomes]
rs7947514	0.80[EUR][1000 genomes]
rs7952024	0.80[EUR][1000 genomes]
rs7952367	0.96[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs8280	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]

No data

Chromatin state (count:126 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:59322800-59329000	Active TSS	ES-I3 Cell Line	embryonic stem cell
2	chr11:59323600-59329000	Active TSS	Brain Anterior Caudate	brain
3	chr11:59324600-59328000	Weak transcription	Small Intestine	intestine
4	chr11:59326800-59328600	Active TSS	Brain Cingulate Gyrus	brain
5	chr11:59327200-59328200	Bivalent/Poised TSS	Fetal Brain Female	brain
6	chr11:59327200-59328600	Active TSS	Primary hematopoietic stem cells short term culture	blood
7	chr11:59327200-59328600	Active TSS	Fetal Heart	heart
8	chr11:59327200-59329000	Active TSS	H1 Cell Line	embryonic stem cell
9	chr11:59327200-59329000	Active TSS	HUES6 Cell Line	embryonic stem cell
10	chr11:59327200-59329000	Active TSS	HUES64 Cell Line	embryonic stem cell
11	chr11:59327200-59329000	Active TSS	iPS-15b Cell Line	embryonic stem cell
12	chr11:59327400-59328000	Active TSS	HepG2	liver
13	chr11:59327400-59328200	Flanking Bivalent TSS/Enh	Fetal Thymus	thymus
14	chr11:59327400-59328600	Active TSS	H9 Derived Neuron Cultured Cells	ES cell derived
15	chr11:59327400-59328600	Active TSS	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
16	chr11:59327400-59328600	Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
17	chr11:59327400-59328600	Active TSS	Brain Dorsolateral Prefrontal Cortex	brain
18	chr11:59327400-59328600	Active TSS	Hela-S3	cervix
19	chr11:59327400-59328600	Active TSS	Osteobl	bone
20	chr11:59327400-59328800	Active TSS	Right Atrium	heart
21	chr11:59327400-59328800	Active TSS	Right Ventricle	heart
22	chr11:59327400-59329000	Active TSS	H9 Cell Line	embryonic stem cell
23	chr11:59327400-59329000	Active TSS	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
24	chr11:59327400-59329000	Active TSS	HUES48 Cell Line	embryonic stem cell
25	chr11:59327400-59329000	Active TSS	iPS-18 Cell Line	embryonic stem cell
26	chr11:59327400-59329000	Active TSS	iPS-20b Cell Line	embryonic stem cell
27	chr11:59327400-59329000	Active TSS	iPS DF 6.9 Cell Line	embryonic stem cell
28	chr11:59327400-59329000	Active TSS	ES-UCSF4 Cell Line	embryonic stem cell
29	chr11:59327400-59329000	Active TSS	Foreskin Fibroblast Primary Cells skin01	Skin
30	chr11:59327400-59329000	Active TSS	Foreskin Keratinocyte Primary Cells skin02	Skin
31	chr11:59327400-59329000	Active TSS	Brain Inferior Temporal Lobe	brain
32	chr11:59327400-59329000	Active TSS	Duodenum Smooth Muscle	Duodenum
33	chr11:59327600-59328000	Flanking Active TSS	Primary B cells from peripheral blood	blood
34	chr11:59327600-59328000	Flanking Active TSS	Primary T helper 17 cells PMA-I stimulated	--
35	chr11:59327600-59328000	Enhancers	Aorta	Aorta
36	chr11:59327600-59328000	Flanking Active TSS	NH-A	brain
37	chr11:59327600-59328200	Flanking Active TSS	Primary B cells from cord blood	blood
38	chr11:59327600-59328200	Flanking Active TSS	Primary T cells fromperipheralblood	blood
39	chr11:59327600-59328200	Flanking Active TSS	Rectal Mucosa Donor 31	rectum
40	chr11:59327600-59328600	Active TSS	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
41	chr11:59327600-59328600	Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
42	chr11:59327600-59328600	Active TSS	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
43	chr11:59327600-59328600	Active TSS	Primary T helper memory cells from peripheral blood 2	blood
44	chr11:59327600-59328600	Active TSS	Primary T cells effector/memory enriched fromperipheralblood	blood
45	chr11:59327600-59328600	Active TSS	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
46	chr11:59327600-59328600	Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Female	--
47	chr11:59327600-59328600	Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--
48	chr11:59327600-59328600	Active TSS	Muscle Satellite Cultured Cells	--
49	chr11:59327600-59328600	Active TSS	Foreskin Melanocyte Primary Cells skin01	Skin
50	chr11:59327600-59328600	Active TSS	Brain Hippocampus Middle	brain

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