Variant report

Variant	rs1783212
Chromosome Location	chr11:59327793-59327794
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr11:59326882..59329448-chr11:59381512..59384615,3	MCF-7	breast:
2	chr11:59327473..59329060-chr11:59341857..59344264,2	K562	blood:
3	chr11:59326302..59328459-chr11:59344498..59347329,2	K562	blood:
4	chr11:59327282..59329404-chr11:59605781..59608762,2	K562	blood:
5	chr11:59327559..59329707-chr11:59434629..59437486,4	K562	blood:
6	chr11:59327475..59330060-chr11:59381628..59383602,2	K562	blood:
7	chr11:59327752..59328252-chr17:78120476..78120984,2	Hela-S3	cervix:

Variant related genes	Relation type
ENSG00000141543	Chromatin interaction
ENSG00000166889	Chromatin interaction
ENSG00000110048	Chromatin interaction
ENSG00000255139	Chromatin interaction
ENSG00000255355	Chromatin interaction

Extended variants
information (count: 133 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:133)

rs_ID	r²[population]
rs1121991	0.88[EUR][1000 genomes]
rs11230020	0.98[AMR][1000 genomes];0.92[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs11230027	0.80[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs11230037	0.92[EUR][1000 genomes]
rs1151063	0.80[EUR][1000 genomes]
rs1151064	0.80[EUR][1000 genomes]
rs11821333	0.84[EUR][1000 genomes]
rs11821465	0.92[EUR][1000 genomes]
rs12271188	0.81[AFR][1000 genomes];0.98[AMR][1000 genomes];0.96[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs12272588	0.88[EUR][1000 genomes]
rs12276505	0.94[AMR][1000 genomes];0.85[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs12278859	0.92[EUR][1000 genomes]
rs12278910	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs12280606	0.92[EUR][1000 genomes]
rs12281969	0.96[AMR][1000 genomes];0.96[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs12285828	0.86[EUR][1000 genomes]
rs12287975	0.88[EUR][1000 genomes]
rs12289162	0.92[EUR][1000 genomes]
rs12289921	0.98[AMR][1000 genomes];0.96[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs12292682	0.88[EUR][1000 genomes]
rs12797334	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs1287111	0.80[EUR][1000 genomes]
rs1287441	0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1287442	0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1287446	0.85[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1287448	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs1287449	0.80[AMR][1000 genomes];0.83[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs1290457	0.84[EUR][1000 genomes]
rs1290459	0.84[EUR][1000 genomes]
rs1290466	0.90[AMR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1299800	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs17046	0.84[EUR][1000 genomes]
rs17153910	0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17154029	0.84[EUR][1000 genomes]
rs17154134	0.80[EUR][1000 genomes]
rs17154138	0.80[EUR][1000 genomes]
rs17154146	0.80[EUR][1000 genomes]
rs17154149	0.80[EUR][1000 genomes]
rs17154157	0.80[EUR][1000 genomes]
rs17154165	0.80[EUR][1000 genomes]
rs1938690	0.92[EUR][1000 genomes]
rs2186597	0.88[EUR][1000 genomes]
rs2509274	0.80[EUR][1000 genomes]
rs2509276	0.80[EUR][1000 genomes]
rs2509290	0.84[EUR][1000 genomes]
rs2927183	0.84[EUR][1000 genomes]
rs3015969	0.81[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3019740	0.92[AMR][1000 genomes];0.96[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs3110322	0.84[EUR][1000 genomes]
rs3132748	0.84[EUR][1000 genomes]
rs34350918	0.92[EUR][1000 genomes]
rs3781793	0.80[EUR][1000 genomes]
rs3862660	0.80[EUR][1000 genomes]
rs41384548	0.80[EUR][1000 genomes]
rs4301803	0.88[EUR][1000 genomes]
rs4393334	0.88[EUR][1000 genomes]
rs4515985	0.88[EUR][1000 genomes]
rs472177	0.84[EUR][1000 genomes]
rs473087	0.84[EUR][1000 genomes]
rs473490	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs474844	0.84[EUR][1000 genomes]
rs475706	0.84[EUR][1000 genomes]
rs478167	0.80[EUR][1000 genomes]
rs482355	0.80[EUR][1000 genomes]
rs485008	0.80[EUR][1000 genomes]
rs486587	0.80[EUR][1000 genomes]
rs488331	0.85[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs492652	0.84[EUR][1000 genomes]
rs4939294	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs495564	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs498388	0.84[EUR][1000 genomes]
rs504016	0.80[EUR][1000 genomes]
rs507235	0.80[EUR][1000 genomes]
rs510122	0.80[EUR][1000 genomes]
rs510249	0.94[AMR][1000 genomes];0.94[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs511785	0.80[EUR][1000 genomes]
rs511957	0.84[EUR][1000 genomes]
rs512695	0.80[EUR][1000 genomes]
rs516912	0.80[EUR][1000 genomes]
rs519605	0.80[EUR][1000 genomes]
rs519865	0.90[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs519873	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs521330	0.80[EUR][1000 genomes]
rs523016	0.80[EUR][1000 genomes]
rs528525	0.80[EUR][1000 genomes]
rs529270	0.80[EUR][1000 genomes]
rs532838	0.87[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs536910	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs537625	0.84[EUR][1000 genomes]
rs540684	0.84[EUR][1000 genomes]
rs550189	0.84[EUR][1000 genomes]
rs550822	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs552601	0.84[EUR][1000 genomes]
rs553700	0.87[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs554149	0.84[EUR][1000 genomes]
rs554848	0.80[EUR][1000 genomes]
rs555175	0.80[EUR][1000 genomes]
rs55667192	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs561604	0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs563276	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs565983	0.80[EUR][1000 genomes]
rs567485	0.80[EUR][1000 genomes]
rs567994	0.89[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs569326	0.80[EUR][1000 genomes]
rs573592	0.80[EUR][1000 genomes]
rs57529518	0.80[EUR][1000 genomes]
rs57871852	0.80[EUR][1000 genomes]
rs579192	0.84[EUR][1000 genomes]
rs579373	0.80[EUR][1000 genomes]
rs580242	0.84[EUR][1000 genomes]
rs58169611	0.80[EUR][1000 genomes]
rs58775794	0.80[EUR][1000 genomes]
rs60009036	0.80[EUR][1000 genomes]
rs60094706	0.80[EUR][1000 genomes]
rs61636608	0.80[EUR][1000 genomes]
rs6591540	0.85[EUR][1000 genomes]
rs6591541	0.82[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs693110	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7116567	0.96[AMR][1000 genomes];0.96[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7119778	0.80[EUR][1000 genomes]
rs7124813	0.96[AMR][1000 genomes];0.96[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7126593	0.88[EUR][1000 genomes]
rs73486934	0.96[AMR][1000 genomes];0.96[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs73486962	0.92[EUR][1000 genomes]
rs73486971	0.92[EUR][1000 genomes]
rs73486979	0.92[EUR][1000 genomes]
rs73486988	0.88[EUR][1000 genomes]
rs73486997	0.88[EUR][1000 genomes]
rs7941643	0.84[EUR][1000 genomes]
rs7947514	0.80[EUR][1000 genomes]
rs7952024	0.80[EUR][1000 genomes]
rs7952367	0.80[AFR][1000 genomes];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs8280	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]

No data

Chromatin state (count:121 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:59319000-59327800	Weak transcription	Stomach Mucosa	stomach
2	chr11:59322800-59329000	Active TSS	ES-I3 Cell Line	embryonic stem cell
3	chr11:59323600-59327800	Weak transcription	Lung	lung
4	chr11:59323600-59329000	Active TSS	Brain Anterior Caudate	brain
5	chr11:59323800-59327800	Weak transcription	Colonic Mucosa	Colon
6	chr11:59324000-59327800	Weak transcription	Psoas Muscle	Psoas
7	chr11:59324200-59327800	Weak transcription	Ovary	ovary
8	chr11:59324600-59327800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
9	chr11:59324600-59327800	Weak transcription	Pancreas	Pancrea
10	chr11:59324600-59328000	Weak transcription	Small Intestine	intestine
11	chr11:59325000-59327800	Weak transcription	HSMM	muscle
12	chr11:59325000-59327800	Weak transcription	HSMMtube	muscle
13	chr11:59325000-59327800	Weak transcription	NHEK	skin
14	chr11:59325400-59327800	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
15	chr11:59325400-59327800	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
16	chr11:59325600-59327800	Weak transcription	NHDF-Ad	bronchial
17	chr11:59325600-59327800	Weak transcription	NHLF	lung
18	chr11:59325800-59327800	Weak transcription	Left Ventricle	heart
19	chr11:59326000-59327800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
20	chr11:59326600-59327800	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
21	chr11:59326800-59328600	Active TSS	Brain Cingulate Gyrus	brain
22	chr11:59327000-59327800	Bivalent Enhancer	Primary neutrophils fromperipheralblood	blood
23	chr11:59327200-59327800	Active TSS	Primary T helper cells fromperipheralblood	blood
24	chr11:59327200-59327800	Flanking Active TSS	GM12878-XiMat	blood
25	chr11:59327200-59327800	Flanking Active TSS	K562	blood
26	chr11:59327200-59328200	Bivalent/Poised TSS	Fetal Brain Female	brain
27	chr11:59327200-59328600	Active TSS	Primary hematopoietic stem cells short term culture	blood
28	chr11:59327200-59328600	Active TSS	Fetal Heart	heart
29	chr11:59327200-59329000	Active TSS	H1 Cell Line	embryonic stem cell
30	chr11:59327200-59329000	Active TSS	HUES6 Cell Line	embryonic stem cell
31	chr11:59327200-59329000	Active TSS	HUES64 Cell Line	embryonic stem cell
32	chr11:59327200-59329000	Active TSS	iPS-15b Cell Line	embryonic stem cell
33	chr11:59327400-59327800	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
34	chr11:59327400-59327800	Flanking Active TSS	IMR90 fetal lung fibroblasts Cell Line	lung
35	chr11:59327400-59327800	Bivalent Enhancer	Primary monocytes fromperipheralblood	blood
36	chr11:59327400-59327800	Flanking Active TSS	Primary T cells from cord blood	blood
37	chr11:59327400-59327800	Enhancers	Primary hematopoietic stem cells	blood
38	chr11:59327400-59327800	Enhancers	Primary T helper naive cells from peripheral blood	blood
39	chr11:59327400-59327800	Flanking Active TSS	Primary T helper cells PMA-I stimulated	--
40	chr11:59327400-59327800	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
41	chr11:59327400-59327800	Enhancers	Primary T killer naive cells fromperipheralblood	blood
42	chr11:59327400-59327800	Flanking Active TSS	Cortex derived primary cultured neurospheres	brain
43	chr11:59327400-59327800	Flanking Active TSS	Ganglion Eminence derived primary cultured neurospheres	brain
44	chr11:59327400-59327800	Flanking Active TSS	Foreskin Fibroblast Primary Cells skin02	Skin
45	chr11:59327400-59327800	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
46	chr11:59327400-59327800	Enhancers	Fetal Adrenal Gland	Adrenal Gland
47	chr11:59327400-59327800	Enhancers	Spleen	Spleen
48	chr11:59327400-59327800	Flanking Active TSS	A549	lung
49	chr11:59327400-59327800	Flanking Active TSS	Dnd41	blood
50	chr11:59327400-59328000	Active TSS	HepG2	liver

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