Variant report

Variant	rs1287111
Chromosome Location	chr11:59523385-59523386
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	USF1	chr11:59523070-59523729	A549	lung:	n/a	chr11:59523279-59523290 chr11:59523566-59523577
2	GATA2	chr11:59523324-59523868	HUVEC	blood vessel:	n/a	chr11:59523470-59523480
3	BRCA1	chr11:59523192-59523757	Hela-S3	cervix:	n/a	n/a
4	UBTF	chr11:59521459-59524064	K562	blood:	n/a	n/a
5	REST	chr11:59523235-59523534	Hela-S3	cervix:	n/a	n/a
6	USF1	chr11:59522193-59523804	HCT-116	colon:	n/a	chr11:59523279-59523290 chr11:59523566-59523577 chr11:59522833-59522849
7	E2F6	chr11:59521513-59523560	K562	blood:	n/a	chr11:59522829-59522839 chr11:59523236-59523248 chr11:59522826-59522835 chr11:59521608-59521617 chr11:59522828-59522838 chr11:59521715-59521725 chr11:59523060-59523070
8	USF1	chr11:59523176-59523385	HepG2	liver:	n/a	chr11:59523279-59523290
9	USF1	chr11:59522987-59523839	K562	blood:	n/a	chr11:59523279-59523290 chr11:59523566-59523577
10	CTCF	chr11:59523360-59523510	HRE	kidney:	n/a	n/a
11	MAX	chr11:59521399-59523549	ECC-1	luminal epithelium:	n/a	n/a
12	REST	chr11:59523211-59523498	PFSK-1	brain:	n/a	n/a
13	MAX	chr11:59521372-59523745	HepG2	liver:	n/a	n/a
14	FOSL1	chr11:59523098-59523463	K562	blood:	n/a	n/a
15	POLR2A	chr11:59522350-59523653	K562	blood:	n/a	n/a
16	USF2	chr11:59523215-59523855	K562	blood:	n/a	chr11:59523280-59523291
17	PBX3	chr11:59522522-59523650	SK-N-SH	brain:	n/a	n/a
18	MXI1	chr11:59522584-59523746	HepG2	liver:	n/a	chr11:59523421-59523430
19	FOS	chr11:59522932-59524642	HUVEC	blood vessel:	n/a	chr11:59523291-59523302
20	POLR2A	chr11:59522293-59523681	HUVEC	blood vessel:	n/a	n/a
21	USF1	chr11:59523151-59523432	HepG2	liver:	n/a	chr11:59523279-59523290
22	ZMIZ1	chr11:59523096-59523975	K562	blood:	n/a	n/a
23	FOS	chr11:59523131-59523474	MCF10A-Er-Src	breast:	n/a	chr11:59523291-59523302
24	CTCF	chr11:59520889-59523923	SK-N-SH	brain:	n/a	chr11:59521599-59521617 chr11:59521601-59521622 chr11:59521604-59521614 chr11:59521602-59521615 chr11:59521602-59521611 chr11:59521600-59521616 chr11:59521602-59521615
25	POLR2A	chr11:59522153-59523741	K562	blood:	n/a	n/a
26	ZBTB7A	chr11:59522357-59523695	ECC-1	luminal epithelium:	n/a	chr11:59523195-59523203
27	ZEB1	chr11:59521394-59523791	HepG2	liver:	n/a	n/a
28	POLR2A	chr11:59521521-59524625	HUVEC	blood vessel:	n/a	n/a
29	CEBPD	chr11:59523059-59523726	K562	blood:	n/a	n/a
30	FOSL2	chr11:59523008-59523424	MCF-7	breast:	n/a	n/a
31	USF2	chr11:59523104-59523701	H1-hESC	embryonic stem cell:	n/a	chr11:59523280-59523291
32	MAX	chr11:59522787-59523737	HepG2	liver:	n/a	n/a
33	POLR2A	chr11:59522792-59523879	K562	blood:	n/a	n/a
34	EBF1	chr11:59523342-59523684	GM12878	blood:	n/a	chr11:59523517-59523526 chr11:59523515-59523526 chr11:59523538-59523549 chr11:59523482-59523493
35	FOSL1	chr11:59523023-59523544	K562	blood:	n/a	n/a
36	USF1	chr11:59523140-59523715	A549	lung:	n/a	chr11:59523279-59523290 chr11:59523566-59523577
37	HEY1	chr11:59523210-59523582	K562	blood:	n/a	n/a
38	POLR2A	chr11:59522545-59523548	ProgFib	skin:	n/a	n/a
39	USF1	chr11:59523179-59523408	A549	lung:	n/a	chr11:59523279-59523290
40	USF1	chr11:59523076-59523642	SK-N-SH_RA	brain:	n/a	chr11:59523279-59523290 chr11:59523566-59523577
41	POLR2A	chr11:59523182-59523554	SK-N-SH	brain:	n/a	n/a
42	MAZ	chr11:59522282-59523873	Hela-S3	cervix:	n/a	n/a
43	POLR2A	chr11:59521622-59524571	Hela-S3	cervix:	n/a	n/a
44	USF1	chr11:59523036-59523739	SK-N-SH_RA	brain:	n/a	chr11:59523279-59523290 chr11:59523566-59523577
45	RCOR1	chr11:59523207-59523936	Hela-S3	cervix:	n/a	n/a
46	TEAD4	chr11:59523190-59523890	K562	blood:	n/a	n/a
47	CTCF	chr11:59523300-59523450	WI-38	lung:	n/a	n/a
48	FOS	chr11:59523232-59523404	MCF10A-Er-Src	breast:	n/a	chr11:59523291-59523302
49	POLR2A	chr11:59522959-59523717	U87	brain:	n/a	n/a
50	SIN3AK20	chr11:59521352-59523760	MCF-7	breast:	n/a	n/a

No.	Distal block	Cell Line	Cell type
1	chr11:59514703..59516740-chr11:59522091..59524203,2	MCF-7	breast:
2	chr11:59523011..59526082-chr11:59538557..59541399,3	K562	blood:
3	chr11:59435275..59437958-chr11:59523274..59525120,2	K562	blood:
4	chr11:59520214..59524923-chr11:59576549..59579669,4	MCF-7	breast:
5	chr11:59522643..59524451-chr16:67197812..67200302,2	MCF-7	breast:
6	chr11:59521605..59525070-chr11:59543036..59549785,6	MCF-7	breast:
7	chr11:59520935..59525781-chr11:59552803..59557885,8	MCF-7	breast:
8	chr11:59434314..59436454-chr11:59523129..59524749,2	MCF-7	breast:
9	chr1:114301552..114304210-chr11:59521950..59524919,2	MCF-7	breast:
10	chr11:59519722..59526041-chr11:59575307..59578961,7	MCF-7	breast:

Variant related genes	Relation type
ENSG00000254477	TF binding region
ENSG00000265690	Chromatin interaction
ENSG00000166902	Chromatin interaction
ENSG00000255538	Chromatin interaction
ENSG00000116793	Chromatin interaction
ENSG00000166889	Chromatin interaction
ENSG00000166900	Chromatin interaction
ENSG00000102878	Chromatin interaction
ENSG00000255355	Chromatin interaction
ENSG00000234964	Chromatin interaction

Extended variants
information (count: 240 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:237)

rs_ID	r²[population]
rs10501380	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[TSI][hapmap];0.85[EUR][1000 genomes]
rs1121991	0.92[EUR][1000 genomes]
rs11230020	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];0.91[MEX][hapmap];1.00[TSI][hapmap];0.80[EUR][1000 genomes]
rs11230027	0.80[EUR][1000 genomes]
rs11230037	1.00[CEU][hapmap];1.00[CHB][hapmap];0.91[CHD][hapmap];1.00[JPT][hapmap];0.90[MEX][hapmap];1.00[TSI][hapmap];0.88[EUR][1000 genomes]
rs1151063	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.97[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1151064	0.80[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.86[LWK][hapmap];1.00[MEX][hapmap];0.84[MKK][hapmap];1.00[TSI][hapmap];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11821333	0.96[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs11821465	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];0.91[MEX][hapmap];1.00[TSI][hapmap];0.88[EUR][1000 genomes]
rs12272588	0.92[EUR][1000 genomes]
rs12276505	0.86[JPT][hapmap]
rs12278859	0.88[EUR][1000 genomes]
rs12278910	1.00[CEU][hapmap];0.91[CHD][hapmap];1.00[JPT][hapmap];0.91[MEX][hapmap];1.00[TSI][hapmap];0.80[EUR][1000 genomes]
rs12280606	0.86[CEU][hapmap];1.00[CHB][hapmap];0.91[CHD][hapmap];0.88[JPT][hapmap];0.88[EUR][1000 genomes]
rs12285828	0.90[EUR][1000 genomes]
rs12287696	1.00[TSI][hapmap]
rs12287975	0.84[EUR][1000 genomes]
rs12289162	0.88[EUR][1000 genomes]
rs12289921	1.00[CEU][hapmap];0.91[CHD][hapmap];0.86[JPT][hapmap];0.91[MEX][hapmap];1.00[TSI][hapmap]
rs12290453	1.00[TSI][hapmap]
rs12292682	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.92[EUR][1000 genomes]
rs12797334	0.80[EUR][1000 genomes]
rs1287441	0.80[EUR][1000 genomes]
rs1287446	0.80[EUR][1000 genomes]
rs1287448	0.80[EUR][1000 genomes]
rs1290457	0.85[AMR][1000 genomes];0.96[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs1290459	0.96[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs1290460	0.84[AMR][1000 genomes]
rs1299800	1.00[CEU][hapmap];1.00[JPT][hapmap];0.80[EUR][1000 genomes]
rs17046	0.83[AMR][1000 genomes];0.96[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs17153910	1.00[CEU][hapmap];0.91[CHD][hapmap];1.00[JPT][hapmap];0.91[MEX][hapmap];1.00[TSI][hapmap];0.80[EUR][1000 genomes]
rs17153962	1.00[MEX][hapmap]
rs17154025	1.00[CHB][hapmap];0.84[AMR][1000 genomes]
rs17154029	0.80[AMR][1000 genomes];0.96[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs17154134	0.86[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[TSI][hapmap];1.00[EUR][1000 genomes]
rs17154138	1.00[EUR][1000 genomes]
rs17154142	1.00[CHB][hapmap]
rs17154146	0.86[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[TSI][hapmap];1.00[EUR][1000 genomes]
rs17154149	1.00[EUR][1000 genomes]
rs17154157	0.86[ASW][hapmap];1.00[CEU][hapmap];1.00[JPT][hapmap];1.00[TSI][hapmap];1.00[EUR][1000 genomes]
rs17154165	0.86[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[TSI][hapmap];1.00[EUR][1000 genomes]
rs17154169	1.00[EUR][1000 genomes]
rs17154175	1.00[EUR][1000 genomes]
rs17154180	0.86[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[TSI][hapmap];1.00[EUR][1000 genomes]
rs17154195	1.00[EUR][1000 genomes]
rs17154200	0.80[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[TSI][hapmap];1.00[EUR][1000 genomes]
rs17154203	1.00[CHB][hapmap]
rs17154205	1.00[CHB][hapmap]
rs17154216	1.00[CHB][hapmap]
rs17154222	1.00[EUR][1000 genomes]
rs17154227	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[TSI][hapmap];0.98[EUR][1000 genomes]
rs17154234	1.00[CEU][hapmap];1.00[TSI][hapmap]
rs17510841	1.00[TSI][hapmap]
rs17593682	1.00[TSI][hapmap]
rs17593836	1.00[TSI][hapmap]
rs17596359	1.00[TSI][hapmap]
rs17596862	1.00[CHB][hapmap];1.00[TSI][hapmap]
rs17597065	1.00[CHB][hapmap];1.00[TSI][hapmap]
rs17597092	1.00[TSI][hapmap]
rs1783212	0.80[EUR][1000 genomes]
rs1938690	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];0.91[MEX][hapmap];1.00[TSI][hapmap];0.88[EUR][1000 genomes]
rs2186597	0.92[EUR][1000 genomes]
rs2447309	0.84[AMR][1000 genomes]
rs2447310	0.91[AMR][1000 genomes];0.81[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs2508335	1.00[CHB][hapmap];1.00[JPT][hapmap];0.91[AMR][1000 genomes];0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2508339	0.84[AMR][1000 genomes]
rs2509274	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2509275	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.82[MEX][hapmap];1.00[TSI][hapmap];0.91[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2509276	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2509279	1.00[CHB][hapmap];1.00[JPT][hapmap];0.89[AMR][1000 genomes];0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2509290	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.80[AMR][1000 genomes];0.96[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs2509730	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[EUR][1000 genomes]
rs2927182	0.85[EUR][1000 genomes]
rs2927183	0.91[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2927184	1.00[CHB][hapmap];0.84[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs2957223	0.88[AFR][1000 genomes];0.98[AMR][1000 genomes];0.96[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs2957227	0.84[AMR][1000 genomes]
rs3015969	0.80[EUR][1000 genomes]
rs3110322	0.80[AMR][1000 genomes];0.96[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs3132748	0.96[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs34350918	0.88[EUR][1000 genomes]
rs35211634	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[GIH][hapmap];1.00[TSI][hapmap]
rs3781792	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[EUR][1000 genomes]
rs3781793	1.00[EUR][1000 genomes]
rs3862660	1.00[EUR][1000 genomes]
rs41340150	1.00[CHB][hapmap];1.00[MEX][hapmap]
rs41384548	0.86[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[TSI][hapmap];1.00[EUR][1000 genomes]
rs4301803	0.92[EUR][1000 genomes]
rs4356243	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.98[EUR][1000 genomes]
rs4393334	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.92[EUR][1000 genomes]
rs4515985	0.92[EUR][1000 genomes]
rs471369	0.89[AMR][1000 genomes];0.81[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs472152	0.91[AMR][1000 genomes];0.81[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs472177	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.91[MEX][hapmap];1.00[TSI][hapmap];0.96[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs473087	0.89[AMR][1000 genomes];0.96[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs473490	1.00[CEU][hapmap];0.91[CHD][hapmap];1.00[JPT][hapmap];1.00[TSI][hapmap];0.80[EUR][1000 genomes]
rs473679	0.84[AMR][1000 genomes]
rs473979	1.00[CHB][hapmap];0.84[AMR][1000 genomes]
rs474844	0.96[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs475145	1.00[CHB][hapmap];0.84[AMR][1000 genomes]
rs475706	0.89[AMR][1000 genomes];0.96[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs475800	0.82[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs477577	0.91[AMR][1000 genomes];0.81[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs477729	0.91[AMR][1000 genomes];0.81[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs478167	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[EUR][1000 genomes]
rs478924	0.84[AMR][1000 genomes]
rs479264	0.91[AMR][1000 genomes];0.85[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs480944	0.84[AMR][1000 genomes]
rs481893	0.89[AMR][1000 genomes];0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs482355	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.88[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs482356	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[TSI][hapmap];1.00[EUR][1000 genomes]
rs484030	0.82[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs484814	0.91[AMR][1000 genomes];0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs484895	1.00[EUR][1000 genomes]
rs485008	0.88[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs485803	1.00[CHB][hapmap];1.00[JPT][hapmap];0.91[AMR][1000 genomes];0.81[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs486587	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs486952	1.00[MEX][hapmap]
rs487312	0.84[AMR][1000 genomes]
rs488331	1.00[CEU][hapmap];0.91[CHD][hapmap];1.00[JPT][hapmap];0.82[MEX][hapmap];1.00[TSI][hapmap];0.80[EUR][1000 genomes]
rs492652	0.83[AMR][1000 genomes];0.96[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs493025	0.84[AMR][1000 genomes]
rs4939294	0.80[EUR][1000 genomes]
rs494110	0.91[AMR][1000 genomes];0.81[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs495564	1.00[CEU][hapmap];0.91[CHD][hapmap];1.00[JPT][hapmap];0.91[MEX][hapmap];1.00[TSI][hapmap];0.80[EUR][1000 genomes]
rs496938	0.87[AMR][1000 genomes];0.81[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs497596	0.93[AMR][1000 genomes];0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs498099	1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.87[AMR][1000 genomes];0.81[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs498165	0.84[AMR][1000 genomes]
rs498299	0.89[AMR][1000 genomes];0.81[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs498388	0.96[EUR][1000 genomes]
rs499054	0.89[AMR][1000 genomes];0.81[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs501288	0.84[AMR][1000 genomes]
rs504016	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[YRI][hapmap];0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs504320	0.84[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs506384	1.00[CHB][hapmap];1.00[MEX][hapmap];0.84[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs507235	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs508411	1.00[CHB][hapmap];0.84[AMR][1000 genomes]
rs510122	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs511263	0.84[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs511785	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs511957	0.89[AMR][1000 genomes];0.96[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs512194	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.91[AMR][1000 genomes];0.92[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs512690	0.84[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs512695	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs513979	1.00[CHB][hapmap];1.00[JPT][hapmap];0.91[AMR][1000 genomes];0.81[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs516912	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[EUR][1000 genomes]
rs519605	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs519865	0.80[EUR][1000 genomes]
rs519873	0.80[EUR][1000 genomes]
rs520622	1.00[CHB][hapmap]
rs521330	0.88[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs523016	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.90[LWK][hapmap];1.00[MEX][hapmap];0.95[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.90[AFR][1000 genomes];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs524102	1.00[CHB][hapmap];1.00[JPT][hapmap];0.91[AMR][1000 genomes];0.81[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs526672	0.87[AMR][1000 genomes];0.81[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs528525	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[EUR][1000 genomes]
rs529270	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.88[LWK][hapmap];1.00[MEX][hapmap];0.84[MKK][hapmap];1.00[TSI][hapmap];0.81[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs532293	0.84[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs532838	0.80[EUR][1000 genomes]
rs533166	1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.93[AMR][1000 genomes];0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs536544	1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.93[AMR][1000 genomes];0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs536910	0.80[EUR][1000 genomes]
rs537595	1.00[CHB][hapmap];1.00[MEX][hapmap]
rs537625	0.91[AMR][1000 genomes];0.96[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs538169	0.89[AMR][1000 genomes];0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs540684	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.83[AMR][1000 genomes];0.96[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs540989	0.86[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs549086	1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.91[AMR][1000 genomes];0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs550189	0.89[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs550449	0.84[AMR][1000 genomes]
rs550822	0.82[CEU][hapmap];1.00[JPT][hapmap];0.80[EUR][1000 genomes]
rs552601	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.89[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs553700	1.00[CEU][hapmap];1.00[JPT][hapmap];0.80[EUR][1000 genomes]
rs554149	0.96[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs554460	0.84[AMR][1000 genomes]
rs554848	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[TSI][hapmap];0.87[YRI][hapmap];1.00[EUR][1000 genomes]
rs555175	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs555251	1.00[CHB][hapmap];1.00[MEX][hapmap];0.84[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs55667192	0.80[EUR][1000 genomes]
rs558569	0.84[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs559150	1.00[MEX][hapmap]
rs561029	0.91[AMR][1000 genomes];0.81[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs561604	0.80[EUR][1000 genomes]
rs562657	0.89[AMR][1000 genomes];0.81[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs563267	0.89[AMR][1000 genomes];0.81[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs563276	0.80[EUR][1000 genomes]
rs563800	0.91[AMR][1000 genomes];0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs565026	0.84[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs565983	1.00[EUR][1000 genomes]
rs567253	0.84[AMR][1000 genomes]
rs567485	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs567603	1.00[CEU][hapmap];1.00[JPT][hapmap];1.00[EUR][1000 genomes]
rs567994	1.00[CEU][hapmap];1.00[JPT][hapmap];0.91[MEX][hapmap]
rs569326	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs571451	0.84[AMR][1000 genomes]
rs573592	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[EUR][1000 genomes]
rs57529518	1.00[EUR][1000 genomes]
rs577224	1.00[CHB][hapmap];0.84[AMR][1000 genomes]
rs577644	0.81[ASN][1000 genomes]
rs57871852	1.00[EUR][1000 genomes]
rs579192	0.96[EUR][1000 genomes]
rs579362	1.00[CEU][hapmap];1.00[JPT][hapmap]
rs579373	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs580242	0.87[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs581265	0.85[AMR][1000 genomes];0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs58169611	1.00[EUR][1000 genomes]
rs58775794	1.00[EUR][1000 genomes]
rs60009036	1.00[EUR][1000 genomes]
rs60094706	1.00[EUR][1000 genomes]
rs61636608	1.00[EUR][1000 genomes]
rs6591541	1.00[CEU][hapmap];0.91[CHD][hapmap];1.00[JPT][hapmap];0.91[MEX][hapmap];1.00[TSI][hapmap];0.80[EUR][1000 genomes]
rs693110	1.00[CEU][hapmap];1.00[JPT][hapmap];0.80[EUR][1000 genomes]
rs7108731	0.81[EUR][1000 genomes]
rs7112355	1.00[TSI][hapmap]
rs7114773	1.00[CEU][hapmap];1.00[JPT][hapmap];1.00[EUR][1000 genomes]
rs7116567	1.00[CEU][hapmap];1.00[JPT][hapmap]
rs7117509	1.00[CEU][hapmap];1.00[TSI][hapmap];0.85[EUR][1000 genomes]
rs7119778	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[EUR][1000 genomes]
rs7123969	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[TSI][hapmap];0.98[EUR][1000 genomes]
rs7124813	1.00[CEU][hapmap];1.00[JPT][hapmap]
rs7126593	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.92[EUR][1000 genomes]
rs7131059	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[EUR][1000 genomes]
rs73486962	0.88[EUR][1000 genomes]
rs73486971	0.88[EUR][1000 genomes]
rs73486979	0.88[EUR][1000 genomes]
rs73486988	0.92[EUR][1000 genomes]
rs73486997	0.92[EUR][1000 genomes]
rs7933970	0.98[EUR][1000 genomes]
rs7937245	1.00[CHB][hapmap]
rs7937684	1.00[CHB][hapmap]
rs7941643	0.96[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs7946152	1.00[EUR][1000 genomes]
rs7947036	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[EUR][1000 genomes]
rs7947514	0.86[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];0.83[GIH][hapmap];1.00[JPT][hapmap];1.00[TSI][hapmap];1.00[EUR][1000 genomes]
rs7952024	0.86[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[TSI][hapmap];1.00[EUR][1000 genomes]
rs7952367	0.80[EUR][1000 genomes]
rs8280	1.00[CEU][hapmap];0.91[CHD][hapmap];1.00[JPT][hapmap];0.91[MEX][hapmap];1.00[TSI][hapmap];0.80[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2752406	chr11:59490424-59529524	Enhancers Weak transcription Active TSS Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Strong transcription Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	15 gene(s)	inside rSNPs	n/a
2	esv2755215	chr11:59515524-59529524	Active TSS Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Strong transcription Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	n/a
3	nsv1046086	chr11:59520424-59561455	Enhancers Weak transcription Strong transcription Genic enhancers Active TSS Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:126 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:59521200-59523600	Active TSS	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
2	chr11:59521400-59523400	Active TSS	IMR90 fetal lung fibroblasts Cell Line	lung
3	chr11:59521400-59523400	Active TSS	Brain Angular Gyrus	brain
4	chr11:59521400-59523600	Active TSS	Rectal Mucosa Donor 29	rectum
5	chr11:59521400-59523800	Active TSS	HUES6 Cell Line	embryonic stem cell
6	chr11:59521400-59524000	Active TSS	H9 Cell Line	embryonic stem cell
7	chr11:59521400-59524000	Active TSS	Foreskin Melanocyte Primary Cells skin01	Skin
8	chr11:59521400-59524000	Active TSS	Fetal Intestine Large	intestine
9	chr11:59521400-59524200	Flanking Active TSS	Primary B cells from cord blood	blood
10	chr11:59521400-59524400	Active TSS	iPS DF 6.9 Cell Line	embryonic stem cell
11	chr11:59521400-59524400	Active TSS	HSMMtube	muscle
12	chr11:59521400-59524600	Active TSS	Fetal Intestine Small	intestine
13	chr11:59521600-59523400	Active TSS	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
14	chr11:59521600-59523400	Active TSS	Primary T killer memory cells from peripheral blood	blood
15	chr11:59521600-59523400	Active TSS	Foreskin Fibroblast Primary Cells skin02	Skin
16	chr11:59521600-59523400	Active TSS	Foreskin Keratinocyte Primary Cells skin03	Skin
17	chr11:59521600-59523400	Active TSS	Aorta	Aorta
18	chr11:59521600-59523400	Active TSS	Brain Hippocampus Middle	brain
19	chr11:59521600-59523400	Active TSS	Brain Dorsolateral Prefrontal Cortex	brain
20	chr11:59521600-59523400	Active TSS	Brain Substantia Nigra	brain
21	chr11:59521600-59523400	Active TSS	Placenta Amnion	Placenta Amnion
22	chr11:59521600-59523400	Active TSS	Psoas Muscle	Psoas
23	chr11:59521600-59523400	Active TSS	Spleen	Spleen
24	chr11:59521600-59523400	Active TSS	A549	lung
25	chr11:59521600-59523400	Active TSS	NHDF-Ad	bronchial
26	chr11:59521600-59523400	Active TSS	NHLF	lung
27	chr11:59521600-59523600	Active TSS	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
28	chr11:59521600-59523600	Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
29	chr11:59521600-59523600	Active TSS	ES-UCSF4 Cell Line	embryonic stem cell
30	chr11:59521600-59523600	Active TSS	Foreskin Fibroblast Primary Cells skin01	Skin
31	chr11:59521600-59523600	Flanking Active TSS	Primary mononuclear cells fromperipheralblood	Blood
32	chr11:59521600-59523600	Active TSS	Colon Smooth Muscle	Colon
33	chr11:59521600-59523600	Active TSS	Ovary	ovary
34	chr11:59521600-59523600	Active TSS	Sigmoid Colon	Sigmoid Colon
35	chr11:59521600-59523600	Active TSS	Small Intestine	intestine
36	chr11:59521600-59523600	Active TSS	Stomach Mucosa	stomach
37	chr11:59521600-59523800	Active TSS	H1 Derived Mesenchymal Stem Cells	ES cell derived
38	chr11:59521600-59523800	Active TSS	Brain Inferior Temporal Lobe	brain
39	chr11:59521600-59523800	Active TSS	Esophagus	oesophagus
40	chr11:59521600-59523800	Active TSS	Gastric	stomach
41	chr11:59521600-59523800	Active TSS	Left Ventricle	heart
42	chr11:59521600-59523800	Flanking Active TSS	Dnd41	blood
43	chr11:59521600-59524000	Active TSS	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
44	chr11:59521600-59524000	Active TSS	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
45	chr11:59521600-59524000	Active TSS	HUES48 Cell Line	embryonic stem cell
46	chr11:59521600-59524000	Active TSS	Right Atrium	heart
47	chr11:59521600-59524000	Active TSS	Right Ventricle	heart
48	chr11:59521600-59524200	Active TSS	ES-I3 Cell Line	embryonic stem cell
49	chr11:59521600-59524200	Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
50	chr11:59521600-59524200	Active TSS	Breast Myoepithelial Primary Cells	Breast

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