Variant report

Variant	rs17154216
Chromosome Location	chr11:59590961-59590962
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:13)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:13 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr11:59590238..59591135-chr11:59897588..59898633,5	MCF-7	breast:
2	chr11:59576781..59579599-chr11:59589600..59592201,3	K562	blood:
3	chr11:59590289..59592915-chr11:59600247..59604026,3	K562	blood:
4	chr11:59590046..59591697-chr11:59685948..59687158,11	MCF-7	breast:
5	chr11:59589954..59591189-chr11:59897601..59898679,5	K562	blood:
6	chr11:59590109..59592217-chr11:59597177..59598935,2	K562	blood:
7	chr11:59590161..59591119-chr11:60018628..60019571,4	K562	blood:
8	chr11:59590610..59592173-chr11:59593790..59596614,2	K562	blood:
9	chr11:59590156..59591101-chr11:59960804..59961684,4	MCF-7	breast:
10	chr11:59590107..59591267-chr11:60018622..60019728,5	MCF-7	breast:
11	chr11:59589201..59591093-chr11:59734324..59736410,2	K562	blood:
12	chr11:59590172..59590989-chr11:59686223..59687124,2	K562	blood:
13	chr11:59590157..59591079-chr11:59686234..59686794,2	MCF-7	breast:

No data

Variant related genes	Relation type
ENSG00000134812	Chromatin interaction
ENSG00000166902	Chromatin interaction

Extended variants
information (count: 111 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:111)

rs_ID	r²[population]
rs10501380	1.00[CHB][hapmap]
rs11230037	1.00[CHB][hapmap]
rs1151063	1.00[CHB][hapmap]
rs1151064	1.00[CHB][hapmap]
rs11821465	1.00[CHB][hapmap]
rs12275314	1.00[EUR][1000 genomes]
rs12280446	1.00[EUR][1000 genomes]
rs12280606	1.00[CHB][hapmap]
rs12282618	1.00[EUR][1000 genomes]
rs12292682	1.00[CHB][hapmap]
rs1287111	1.00[CHB][hapmap]
rs1290460	1.00[EUR][1000 genomes]
rs17154025	1.00[CHB][hapmap];1.00[JPT][hapmap];0.87[EUR][1000 genomes]
rs17154134	1.00[CHB][hapmap]
rs17154142	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17154146	1.00[CHB][hapmap]
rs17154165	1.00[CHB][hapmap]
rs17154180	1.00[CHB][hapmap]
rs17154200	1.00[CHB][hapmap]
rs17154203	1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[YRI][hapmap];0.91[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs17154205	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.94[AFR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17154220	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17154227	1.00[CHB][hapmap]
rs17596862	1.00[CHB][hapmap]
rs17597065	1.00[CHB][hapmap]
rs1938690	1.00[CHB][hapmap]
rs2298589	1.00[JPT][hapmap];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2447309	1.00[EUR][1000 genomes]
rs2508335	1.00[CHB][hapmap]
rs2508339	1.00[EUR][1000 genomes]
rs2509274	1.00[CHB][hapmap]
rs2509275	1.00[CHB][hapmap]
rs2509279	1.00[CHB][hapmap]
rs2509290	1.00[CHB][hapmap]
rs2509730	1.00[CHB][hapmap]
rs2927184	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[EUR][1000 genomes]
rs2957227	1.00[EUR][1000 genomes]
rs3110321	1.00[EUR][1000 genomes]
rs35211634	1.00[CHB][hapmap]
rs3781792	1.00[CHB][hapmap];0.81[YRI][hapmap]
rs41340150	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs41384548	1.00[CHB][hapmap]
rs4356243	1.00[CHB][hapmap]
rs4393334	1.00[CHB][hapmap]
rs472177	1.00[CHB][hapmap]
rs473679	1.00[EUR][1000 genomes]
rs473912	1.00[EUR][1000 genomes]
rs473979	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[EUR][1000 genomes]
rs475145	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[EUR][1000 genomes]
rs478167	1.00[CHB][hapmap]
rs478924	1.00[EUR][1000 genomes]
rs482355	1.00[CHB][hapmap]
rs482356	1.00[CHB][hapmap]
rs485803	1.00[CHB][hapmap]
rs493025	1.00[EUR][1000 genomes]
rs498099	1.00[CHB][hapmap]
rs498165	1.00[EUR][1000 genomes]
rs501288	1.00[EUR][1000 genomes]
rs504016	1.00[CHB][hapmap]
rs504320	1.00[EUR][1000 genomes]
rs506384	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[EUR][1000 genomes]
rs508411	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[EUR][1000 genomes]
rs511263	1.00[EUR][1000 genomes]
rs512194	1.00[CHB][hapmap]
rs512690	1.00[EUR][1000 genomes]
rs513979	1.00[CHB][hapmap]
rs516912	1.00[CHB][hapmap]
rs519605	1.00[CHB][hapmap]
rs520622	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs523016	1.00[CHB][hapmap]
rs524102	1.00[CHB][hapmap]
rs528525	1.00[CHB][hapmap]
rs529270	1.00[CHB][hapmap]
rs532293	1.00[EUR][1000 genomes]
rs533166	1.00[CHB][hapmap]
rs536544	1.00[CHB][hapmap]
rs537595	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs540684	1.00[CHB][hapmap]
rs549086	1.00[CHB][hapmap]
rs550449	1.00[EUR][1000 genomes]
rs552601	1.00[CHB][hapmap]
rs554460	1.00[EUR][1000 genomes]
rs554848	1.00[CHB][hapmap]
rs555251	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[EUR][1000 genomes]
rs558569	1.00[EUR][1000 genomes]
rs559192	1.00[EUR][1000 genomes]
rs565026	1.00[EUR][1000 genomes]
rs567253	1.00[EUR][1000 genomes]
rs571451	1.00[EUR][1000 genomes]
rs572138	1.00[EUR][1000 genomes]
rs573592	1.00[CHB][hapmap]
rs577224	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[EUR][1000 genomes]
rs577644	1.00[EUR][1000 genomes]
rs579373	1.00[CHB][hapmap]
rs59057725	0.94[AFR][1000 genomes];0.86[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs60146927	1.00[EUR][1000 genomes]
rs60628632	0.84[AFR][1000 genomes];0.86[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs60659006	1.00[EUR][1000 genomes]
rs61370741	0.94[AFR][1000 genomes];0.86[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61463035	0.91[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs7114773	0.90[YRI][hapmap]
rs7119778	1.00[CHB][hapmap];0.81[YRI][hapmap]
rs7123969	1.00[CHB][hapmap]
rs7126593	1.00[CHB][hapmap]
rs7131059	1.00[CHB][hapmap]
rs73488820	1.00[EUR][1000 genomes]
rs7937245	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7937684	1.00[CHB][hapmap];1.00[JPT][hapmap];0.87[YRI][hapmap];0.82[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7947036	1.00[CHB][hapmap]
rs7947514	1.00[CHB][hapmap]
rs7952024	1.00[CHB][hapmap]

No data

Chromatin state (count:9 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:59590000-59591000	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
2	chr11:59590200-59591000	Enhancers	Primary monocytes fromperipheralblood	blood
3	chr11:59590200-59591000	Enhancers	Primary hematopoietic stem cells short term culture	blood
4	chr11:59590200-59591000	Enhancers	Stomach Mucosa	stomach
5	chr11:59590200-59591000	Enhancers	Hela-S3	cervix
6	chr11:59590200-59591200	Enhancers	K562	blood
7	chr11:59590400-59591000	Enhancers	Brain Cingulate Gyrus	brain
8	chr11:59590400-59591000	Enhancers	HUVEC	blood vessel
9	chr11:59590600-59591400	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--

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