Variant report

Variant	rs60659006
Chromosome Location	chr11:59458737-59458738
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr11:59456082..59458840-chr11:59461567..59463981,3	K562	blood:
2	chr11:59453648..59457625-chr11:59458136..59461041,3	K562	blood:

Extended variants
information (count: 79 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:78)

rs_ID	r²[population]
rs11820340	0.91[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs11821333	0.82[AMR][1000 genomes]
rs12270043	0.91[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs12275314	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12276956	0.91[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs12280446	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12282618	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1290459	0.82[AMR][1000 genomes]
rs1290460	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17046	0.80[ASN][1000 genomes]
rs17154025	0.90[AMR][1000 genomes];0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17154142	1.00[EUR][1000 genomes]
rs17154205	1.00[EUR][1000 genomes]
rs17154216	1.00[EUR][1000 genomes]
rs17154220	1.00[EUR][1000 genomes]
rs2298589	1.00[EUR][1000 genomes]
rs2447309	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2508339	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2927184	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs2957227	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3110321	0.86[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3132748	0.82[AMR][1000 genomes]
rs472177	0.82[AMR][1000 genomes]
rs473679	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs473912	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs473979	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs474844	0.82[AMR][1000 genomes]
rs475145	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs477577	0.80[ASN][1000 genomes]
rs477729	0.80[ASN][1000 genomes]
rs478924	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs485803	0.80[ASN][1000 genomes]
rs487312	0.90[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs493025	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs494110	0.80[ASN][1000 genomes]
rs496492	0.91[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs496938	0.80[AMR][1000 genomes]
rs498099	0.80[AMR][1000 genomes]
rs498165	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs498388	0.82[AMR][1000 genomes]
rs501288	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs504320	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs506384	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs508411	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs511263	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs512690	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs520622	0.86[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs522957	0.91[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs523932	0.91[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs524102	0.80[ASN][1000 genomes]
rs526672	0.80[AMR][1000 genomes]
rs532293	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs537595	0.81[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs548163	0.91[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs550449	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs554149	0.82[AMR][1000 genomes]
rs554460	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs555251	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs558569	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs559192	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs562076	0.91[AFR][1000 genomes];0.93[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs565026	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs567253	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs571451	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs572138	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs577224	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs577644	0.86[AMR][1000 genomes];1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs579192	0.82[AMR][1000 genomes]
rs59057725	1.00[EUR][1000 genomes]
rs60146927	1.00[EUR][1000 genomes]
rs60628632	1.00[EUR][1000 genomes]
rs61370741	1.00[EUR][1000 genomes]
rs73488820	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73488834	0.91[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs7927187	0.91[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs7937245	1.00[EUR][1000 genomes]
rs7937684	1.00[EUR][1000 genomes]
rs7941643	0.82[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv517878	chr11:59441271-59480969	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:59448800-59459600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
2	chr11:59458000-59459400	Enhancers	Monocytes-CD14+_RO01746	blood
3	chr11:59458400-59459600	Enhancers	Primary monocytes fromperipheralblood	blood
4	chr11:59458600-59459000	Enhancers	Primary neutrophils fromperipheralblood	blood

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