Variant report

Variant	rs3110321
Chromosome Location	chr11:59479263-59479264
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 118 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:117)

rs_ID	r²[population]
rs11820340	0.87[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs12270043	0.87[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs12275314	0.86[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12276956	0.87[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs12280446	0.86[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12282618	0.86[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1290460	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17046	0.81[AMR][1000 genomes];0.80[ASN][1000 genomes]
rs17154025	0.95[AMR][1000 genomes];0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17154142	1.00[EUR][1000 genomes]
rs17154205	1.00[EUR][1000 genomes]
rs17154216	1.00[EUR][1000 genomes]
rs17154220	1.00[EUR][1000 genomes]
rs2298589	1.00[EUR][1000 genomes]
rs2447309	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2447310	0.89[AMR][1000 genomes]
rs2508335	0.85[AMR][1000 genomes]
rs2508339	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2509274	0.85[AMR][1000 genomes]
rs2509275	0.85[AMR][1000 genomes]
rs2509276	0.81[AMR][1000 genomes]
rs2509279	0.87[AMR][1000 genomes]
rs2927182	0.83[AMR][1000 genomes]
rs2927183	0.85[AMR][1000 genomes]
rs2927184	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs2957223	0.82[AMR][1000 genomes]
rs2957227	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs471369	0.87[AMR][1000 genomes]
rs472152	0.89[AMR][1000 genomes]
rs473087	0.87[AMR][1000 genomes]
rs473679	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs473912	0.86[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs473979	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs475145	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs475706	0.87[AMR][1000 genomes]
rs475800	0.83[AMR][1000 genomes]
rs477577	0.89[AMR][1000 genomes];0.80[ASN][1000 genomes]
rs477729	0.82[AFR][1000 genomes];0.89[AMR][1000 genomes];0.80[ASN][1000 genomes]
rs478924	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs479264	0.85[AMR][1000 genomes]
rs481893	0.87[AMR][1000 genomes]
rs484814	0.85[AMR][1000 genomes]
rs485803	0.89[AMR][1000 genomes];0.80[ASN][1000 genomes]
rs486587	0.85[AMR][1000 genomes]
rs487312	0.95[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs492652	0.81[AMR][1000 genomes]
rs493025	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs494110	0.89[AMR][1000 genomes];0.80[ASN][1000 genomes]
rs496492	0.87[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs496938	0.85[AMR][1000 genomes]
rs497596	0.87[AMR][1000 genomes]
rs498099	0.85[AMR][1000 genomes]
rs498165	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs498299	0.87[AMR][1000 genomes]
rs499037	0.80[AMR][1000 genomes]
rs499054	0.87[AMR][1000 genomes]
rs501288	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs504320	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs506384	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs507235	0.85[AMR][1000 genomes]
rs508411	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs510122	0.85[AMR][1000 genomes]
rs511263	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs511785	0.85[AMR][1000 genomes]
rs511957	0.83[AMR][1000 genomes]
rs512194	0.81[AMR][1000 genomes]
rs512690	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs513979	0.81[AFR][1000 genomes];0.89[AMR][1000 genomes]
rs519605	0.85[AMR][1000 genomes]
rs520622	0.90[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs522957	0.87[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs523932	0.87[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs524102	0.82[AFR][1000 genomes];0.89[AMR][1000 genomes];0.80[ASN][1000 genomes]
rs526672	0.85[AMR][1000 genomes]
rs532293	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs533166	0.87[AMR][1000 genomes]
rs536544	0.87[AMR][1000 genomes]
rs537595	0.95[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs537625	0.89[AMR][1000 genomes]
rs538169	0.87[AMR][1000 genomes]
rs540684	0.81[AMR][1000 genomes]
rs540989	0.88[AMR][1000 genomes]
rs548163	0.87[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs549086	0.85[AMR][1000 genomes]
rs550189	0.87[AMR][1000 genomes]
rs550449	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs552601	0.87[AMR][1000 genomes]
rs554460	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs555175	0.85[AMR][1000 genomes]
rs555251	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs558569	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs559192	0.86[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs561029	0.85[AMR][1000 genomes]
rs562076	0.90[ASN][1000 genomes]
rs562657	0.87[AMR][1000 genomes]
rs563267	0.87[AMR][1000 genomes]
rs563800	0.85[AMR][1000 genomes]
rs565026	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs567253	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs567485	0.85[AMR][1000 genomes]
rs569326	0.85[AMR][1000 genomes]
rs571451	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs572138	0.86[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs577224	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs577644	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs580242	0.81[AMR][1000 genomes]
rs581265	0.83[AMR][1000 genomes]
rs59057725	1.00[EUR][1000 genomes]
rs60146927	1.00[EUR][1000 genomes]
rs60628632	1.00[EUR][1000 genomes]
rs60659006	0.86[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61370741	1.00[EUR][1000 genomes]
rs73488820	0.86[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73488834	0.87[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs7927187	0.87[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs7937245	1.00[EUR][1000 genomes]
rs7937684	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv517878	chr11:59441271-59480969	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:59475400-59483200	Weak transcription	K562	blood
2	chr11:59478000-59482200	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
3	chr11:59478200-59489600	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin

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