Variant report

Variant	rs559192
Chromosome Location	chr11:59475589-59475590
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 79 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:78)

rs_ID	r²[population]
rs11820340	0.91[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs11821333	0.82[AMR][1000 genomes]
rs12270043	0.91[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs12275314	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12276956	0.91[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs12280446	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12282618	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1290459	0.82[AMR][1000 genomes]
rs1290460	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17046	0.80[ASN][1000 genomes]
rs17154025	0.90[AMR][1000 genomes];0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17154142	1.00[EUR][1000 genomes]
rs17154205	1.00[EUR][1000 genomes]
rs17154216	1.00[EUR][1000 genomes]
rs17154220	1.00[EUR][1000 genomes]
rs2298589	1.00[EUR][1000 genomes]
rs2447309	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2508339	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2927184	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs2957227	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3110321	0.86[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3132748	0.82[AMR][1000 genomes]
rs472177	0.82[AMR][1000 genomes]
rs473679	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs473912	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs473979	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs474844	0.82[AMR][1000 genomes]
rs475145	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs477577	0.80[ASN][1000 genomes]
rs477729	0.80[ASN][1000 genomes]
rs478924	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs485803	0.80[ASN][1000 genomes]
rs487312	0.90[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs493025	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs494110	0.80[ASN][1000 genomes]
rs496492	0.91[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs496938	0.80[AMR][1000 genomes]
rs498099	0.80[AMR][1000 genomes]
rs498165	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs498388	0.82[AMR][1000 genomes]
rs501288	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs504320	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs506384	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs508411	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs511263	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs512690	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs520622	0.86[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs522957	0.91[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs523932	0.91[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs524102	0.80[ASN][1000 genomes]
rs526672	0.80[AMR][1000 genomes]
rs532293	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs537595	0.81[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs548163	0.91[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs550449	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs554149	0.82[AMR][1000 genomes]
rs554460	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs555251	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs558569	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs562076	0.89[AFR][1000 genomes];0.93[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs565026	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs567253	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs571451	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs572138	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs577224	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs577644	0.86[AMR][1000 genomes];1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs579192	0.82[AMR][1000 genomes]
rs59057725	1.00[EUR][1000 genomes]
rs60146927	1.00[EUR][1000 genomes]
rs60628632	1.00[EUR][1000 genomes]
rs60659006	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61370741	1.00[EUR][1000 genomes]
rs73488820	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73488834	0.91[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs7927187	0.91[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs7937245	1.00[EUR][1000 genomes]
rs7937684	1.00[EUR][1000 genomes]
rs7941643	0.82[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv517878	chr11:59441271-59480969	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:25 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:59472400-59478200	Enhancers	NHEK	skin
2	chr11:59472600-59476400	Enhancers	HMEC	breast
3	chr11:59472600-59476800	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
4	chr11:59472800-59476200	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
5	chr11:59472800-59476400	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
6	chr11:59472800-59476800	Enhancers	Muscle Satellite Cultured Cells	--
7	chr11:59472800-59478200	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
8	chr11:59472800-59478200	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
9	chr11:59473400-59476800	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
10	chr11:59473600-59475600	Enhancers	HUVEC	blood vessel
11	chr11:59473600-59476400	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
12	chr11:59473600-59476600	Enhancers	Placenta	Placenta
13	chr11:59473600-59476600	Enhancers	HSMM	muscle
14	chr11:59473600-59476800	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
15	chr11:59473800-59478200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
16	chr11:59474000-59475600	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
17	chr11:59474800-59476200	Enhancers	Fetal Intestine Large	intestine
18	chr11:59475000-59476200	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
19	chr11:59475000-59477000	Weak transcription	Osteobl	bone
20	chr11:59475000-59477800	Weak transcription	Hela-S3	cervix
21	chr11:59475400-59476400	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
22	chr11:59475400-59476400	Enhancers	A549	lung
23	chr11:59475400-59476400	Weak transcription	NH-A	brain
24	chr11:59475400-59476400	Weak transcription	NHLF	lung
25	chr11:59475400-59483200	Weak transcription	K562	blood

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