Variant report

Variant	rs548163
Chromosome Location	chr11:59471626-59471627
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 78 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:77)

rs_ID	r²[population]
rs11820340	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11821333	0.82[AFR][1000 genomes];0.90[AMR][1000 genomes]
rs12270043	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12275314	0.91[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs12276956	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12280446	0.91[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs12282618	0.91[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs1290457	0.83[AMR][1000 genomes]
rs1290459	0.82[AFR][1000 genomes];0.90[AMR][1000 genomes]
rs1290460	0.82[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs17046	0.85[AMR][1000 genomes];0.80[ASN][1000 genomes]
rs17154025	0.82[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs17154029	0.86[AMR][1000 genomes]
rs17154203	1.00[EUR][1000 genomes]
rs2447309	0.82[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs2508339	0.82[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs2509276	0.81[AMR][1000 genomes]
rs2509290	0.86[AMR][1000 genomes]
rs2927184	0.82[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs2957227	0.82[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs3110321	0.87[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs3110322	0.86[AMR][1000 genomes]
rs3132748	0.90[AMR][1000 genomes]
rs472177	0.90[AMR][1000 genomes]
rs473679	0.82[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs473912	0.91[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs473979	0.82[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs474844	0.82[AFR][1000 genomes];0.90[AMR][1000 genomes]
rs475145	0.82[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs477577	0.80[ASN][1000 genomes]
rs477729	0.80[ASN][1000 genomes]
rs478924	0.82[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs485803	0.80[ASN][1000 genomes]
rs487312	0.82[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs493025	0.82[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs494110	0.80[ASN][1000 genomes]
rs496492	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs496938	0.81[AMR][1000 genomes]
rs498099	0.81[AMR][1000 genomes]
rs498165	0.82[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs498388	0.90[AMR][1000 genomes]
rs501288	0.82[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs504320	0.82[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs506384	0.82[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs508411	0.82[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs511263	0.82[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs512690	0.82[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs520622	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs522957	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs523932	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs524102	0.80[ASN][1000 genomes]
rs526672	0.81[AMR][1000 genomes]
rs532293	0.82[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs537595	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs540684	0.85[AMR][1000 genomes]
rs550449	0.82[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs554149	0.80[AFR][1000 genomes];0.90[AMR][1000 genomes]
rs554460	0.82[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs555251	0.82[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs558569	0.82[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs559192	0.91[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs562076	0.84[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs565026	0.82[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs567253	0.82[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs571451	0.82[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs572138	0.91[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs577224	0.82[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs577644	0.87[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs579192	0.90[AFR][1000 genomes];0.90[AMR][1000 genomes]
rs580242	0.81[AMR][1000 genomes]
rs60659006	0.91[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs61463035	1.00[EUR][1000 genomes]
rs73488804	0.84[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs73488820	0.91[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs73488834	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7927187	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7941643	0.82[AFR][1000 genomes];0.90[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv517878	chr11:59441271-59480969	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:59460400-59473400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
2	chr11:59471200-59473000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived

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