Variant report

Variant	rs526672
Chromosome Location	chr11:59496692-59496693
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 234 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:233)

rs_ID	r²[population]
rs10501380	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.95[EUR][1000 genomes]
rs1121991	0.81[EUR][1000 genomes]
rs11230020	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs11230036	1.00[CEU][hapmap]
rs11230037	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs1151063	1.00[CHB][hapmap];1.00[JPT][hapmap];0.87[AMR][1000 genomes];0.81[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs1151064	1.00[CHB][hapmap];1.00[JPT][hapmap];0.83[AMR][1000 genomes];0.81[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs11820340	0.81[AMR][1000 genomes]
rs11821333	0.92[AMR][1000 genomes];0.85[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs11821465	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs12270043	0.81[AMR][1000 genomes]
rs12272588	0.81[EUR][1000 genomes]
rs12275314	0.80[AMR][1000 genomes]
rs12276505	1.00[CEU][hapmap];0.86[JPT][hapmap];0.82[EUR][1000 genomes]
rs12276956	0.81[AMR][1000 genomes]
rs12278910	1.00[JPT][hapmap]
rs12280446	0.80[AMR][1000 genomes]
rs12280606	1.00[CHB][hapmap];0.88[JPT][hapmap]
rs12282618	0.80[AMR][1000 genomes]
rs12287696	1.00[CEU][hapmap]
rs12289921	0.86[JPT][hapmap]
rs12290453	1.00[CEU][hapmap]
rs12292682	1.00[CHB][hapmap];1.00[JPT][hapmap];0.81[EUR][1000 genomes]
rs12797334	1.00[JPT][hapmap]
rs1287111	1.00[CHB][hapmap];1.00[JPT][hapmap];0.87[AMR][1000 genomes];0.81[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs1290457	0.94[AMR][1000 genomes];0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1290459	0.92[AMR][1000 genomes];0.85[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs1290460	0.80[AMR][1000 genomes]
rs1299800	1.00[JPT][hapmap]
rs17046	0.96[AMR][1000 genomes];0.85[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs17153910	1.00[JPT][hapmap]
rs17154025	1.00[CHB][hapmap];0.80[AMR][1000 genomes]
rs17154029	0.88[AMR][1000 genomes];0.85[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs17154053	0.83[EUR][1000 genomes]
rs17154134	1.00[CHB][hapmap];1.00[JPT][hapmap];0.81[EUR][1000 genomes]
rs17154138	0.81[EUR][1000 genomes]
rs17154142	1.00[CHB][hapmap]
rs17154146	1.00[CHB][hapmap];1.00[JPT][hapmap];0.81[EUR][1000 genomes]
rs17154149	0.81[EUR][1000 genomes]
rs17154157	1.00[JPT][hapmap];0.81[EUR][1000 genomes]
rs17154165	1.00[CHB][hapmap];1.00[JPT][hapmap];0.81[EUR][1000 genomes]
rs17154169	0.81[EUR][1000 genomes]
rs17154175	0.81[EUR][1000 genomes]
rs17154180	1.00[CHB][hapmap];1.00[JPT][hapmap];0.81[EUR][1000 genomes]
rs17154195	0.81[EUR][1000 genomes]
rs17154200	1.00[CHB][hapmap];1.00[JPT][hapmap];0.81[EUR][1000 genomes]
rs17154203	1.00[CHB][hapmap]
rs17154205	1.00[CHB][hapmap]
rs17154216	1.00[CHB][hapmap]
rs17154222	0.81[EUR][1000 genomes]
rs17154227	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs17508845	1.00[CEU][hapmap]
rs17510841	1.00[CEU][hapmap]
rs17511545	1.00[CEU][hapmap]
rs17511686	1.00[CEU][hapmap]
rs17593682	1.00[CEU][hapmap]
rs17593836	1.00[CEU][hapmap]
rs17594827	0.83[EUR][1000 genomes]
rs17596359	1.00[CEU][hapmap]
rs17596862	1.00[CEU][hapmap];1.00[CHB][hapmap]
rs17597065	1.00[CEU][hapmap];1.00[CHB][hapmap]
rs17597092	1.00[CEU][hapmap]
rs1938690	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs2186597	0.81[EUR][1000 genomes]
rs2447309	0.80[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs2447310	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2508335	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs2508339	0.80[AMR][1000 genomes]
rs2509274	1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[AMR][1000 genomes];0.81[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs2509275	1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs2509276	0.91[AMR][1000 genomes];0.81[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs2509279	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs2509290	1.00[CHB][hapmap];1.00[JPT][hapmap];0.88[AMR][1000 genomes];0.85[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs2509730	1.00[CHB][hapmap];1.00[JPT][hapmap];0.81[EUR][1000 genomes]
rs2927182	0.82[AMR][1000 genomes]
rs2927183	0.96[AMR][1000 genomes];0.85[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs2927184	1.00[CHB][hapmap];0.80[AMR][1000 genomes]
rs2957223	0.89[AMR][1000 genomes]
rs2957227	0.80[AMR][1000 genomes]
rs3110321	0.85[AMR][1000 genomes]
rs3110322	0.88[AMR][1000 genomes];0.85[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs3132748	0.92[AMR][1000 genomes];0.85[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs35211634	1.00[CHB][hapmap]
rs3781792	1.00[CHB][hapmap];1.00[JPT][hapmap];0.81[EUR][1000 genomes]
rs3781793	0.81[EUR][1000 genomes]
rs3862660	0.81[EUR][1000 genomes]
rs41340150	1.00[CHB][hapmap]
rs41384548	1.00[CHB][hapmap];1.00[JPT][hapmap];0.81[EUR][1000 genomes]
rs4301803	0.81[EUR][1000 genomes]
rs4356243	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs4393334	1.00[CHB][hapmap];1.00[JPT][hapmap];0.81[EUR][1000 genomes]
rs4515985	0.81[EUR][1000 genomes]
rs471369	0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs472152	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs472177	1.00[CHB][hapmap];1.00[JPT][hapmap];0.92[AMR][1000 genomes];0.85[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs473087	0.98[AMR][1000 genomes];0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs473490	1.00[JPT][hapmap]
rs473679	0.80[AMR][1000 genomes]
rs473912	0.80[AMR][1000 genomes]
rs473979	1.00[CHB][hapmap];0.80[AMR][1000 genomes]
rs474844	0.92[AMR][1000 genomes];0.85[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs475145	1.00[CHB][hapmap];0.80[AMR][1000 genomes]
rs475706	0.98[AMR][1000 genomes];0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs475800	0.87[AMR][1000 genomes];0.95[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs477577	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs477729	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs478167	1.00[CHB][hapmap];1.00[JPT][hapmap];0.81[EUR][1000 genomes]
rs478924	0.80[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs479264	0.96[AMR][1000 genomes];0.95[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs481893	0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs482355	1.00[CHB][hapmap];1.00[JPT][hapmap];0.88[AMR][1000 genomes];0.81[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs482356	1.00[CHB][hapmap];1.00[JPT][hapmap];0.81[EUR][1000 genomes]
rs484030	0.82[AMR][1000 genomes]
rs484814	0.96[AMR][1000 genomes];0.95[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs484895	0.81[EUR][1000 genomes]
rs485008	0.88[AMR][1000 genomes];0.81[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs485803	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs486587	0.96[AMR][1000 genomes];0.81[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs487312	0.80[AMR][1000 genomes]
rs488331	1.00[JPT][hapmap]
rs492652	0.90[AFR][1000 genomes];0.96[AMR][1000 genomes];0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs493025	0.80[AMR][1000 genomes]
rs494110	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs495564	1.00[JPT][hapmap]
rs496492	0.81[AMR][1000 genomes]
rs496938	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs497596	0.93[AMR][1000 genomes];0.95[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs498099	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs498165	0.80[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs498299	0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs498388	0.92[AMR][1000 genomes];0.85[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs499054	0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs501288	0.80[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs504016	1.00[CHB][hapmap];1.00[JPT][hapmap];0.87[AMR][1000 genomes];0.81[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs504320	0.80[AMR][1000 genomes]
rs506384	1.00[CHB][hapmap];0.80[AMR][1000 genomes]
rs507235	0.96[AMR][1000 genomes];0.81[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs508411	1.00[CHB][hapmap];0.80[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs510122	0.96[AMR][1000 genomes];0.81[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs511263	0.80[AMR][1000 genomes]
rs511785	0.96[AMR][1000 genomes];0.81[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs511957	0.89[AMR][1000 genomes];0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs512194	1.00[CHB][hapmap];1.00[JPT][hapmap];0.87[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs512690	0.80[AMR][1000 genomes]
rs512695	0.89[AMR][1000 genomes];0.81[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs513979	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs516912	1.00[CHB][hapmap];1.00[JPT][hapmap];0.81[EUR][1000 genomes]
rs519605	1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[AMR][1000 genomes];0.81[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs520622	1.00[CHB][hapmap]
rs521330	0.88[AMR][1000 genomes];0.81[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs522957	0.81[AMR][1000 genomes]
rs523016	1.00[CHB][hapmap];1.00[JPT][hapmap];0.81[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs523932	0.81[AMR][1000 genomes]
rs524102	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs528525	1.00[CHB][hapmap];1.00[JPT][hapmap];0.81[EUR][1000 genomes]
rs529270	1.00[CHB][hapmap];1.00[JPT][hapmap];0.83[AMR][1000 genomes];0.81[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs532293	0.80[AMR][1000 genomes]
rs533166	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[AMR][1000 genomes];0.95[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs536544	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[AMR][1000 genomes];0.95[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs537595	1.00[CHB][hapmap];0.80[AMR][1000 genomes]
rs537625	0.96[AMR][1000 genomes];0.85[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs538169	0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs540684	1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[AMR][1000 genomes];0.85[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs540989	0.91[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs548163	0.81[AMR][1000 genomes]
rs549086	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[AMR][1000 genomes];0.95[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs550189	0.98[AMR][1000 genomes];0.85[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs550449	0.80[AMR][1000 genomes]
rs550822	1.00[JPT][hapmap]
rs552601	1.00[CHB][hapmap];1.00[JPT][hapmap];0.98[AMR][1000 genomes];0.85[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs553700	1.00[JPT][hapmap]
rs554149	0.92[AMR][1000 genomes];0.85[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs554460	0.80[AMR][1000 genomes]
rs554848	1.00[CHB][hapmap];1.00[JPT][hapmap];0.81[EUR][1000 genomes]
rs555175	0.96[AMR][1000 genomes];0.81[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs555251	1.00[CHB][hapmap];0.80[AMR][1000 genomes]
rs558569	0.80[AMR][1000 genomes]
rs559192	0.80[AMR][1000 genomes]
rs561029	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs562657	0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs563267	0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs563800	0.96[AMR][1000 genomes];0.95[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs565026	0.80[AMR][1000 genomes]
rs565983	0.81[EUR][1000 genomes]
rs567253	0.80[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs567485	0.96[AMR][1000 genomes];0.81[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs567603	1.00[JPT][hapmap];0.81[EUR][1000 genomes]
rs567994	1.00[JPT][hapmap]
rs569326	0.96[AMR][1000 genomes];0.81[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs571451	0.80[AMR][1000 genomes]
rs572138	0.80[AMR][1000 genomes]
rs573592	1.00[CHB][hapmap];1.00[JPT][hapmap];0.81[EUR][1000 genomes]
rs57529518	0.81[EUR][1000 genomes]
rs577224	1.00[CHB][hapmap];0.80[AMR][1000 genomes]
rs577644	0.85[AMR][1000 genomes]
rs57871852	0.81[EUR][1000 genomes]
rs579192	0.92[AMR][1000 genomes];0.85[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs579362	1.00[JPT][hapmap]
rs579373	1.00[CHB][hapmap];1.00[JPT][hapmap];0.89[AMR][1000 genomes];0.81[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs580242	0.91[AMR][1000 genomes];0.85[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs581265	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs58169611	0.81[EUR][1000 genomes]
rs58775794	0.81[EUR][1000 genomes]
rs60009036	0.81[EUR][1000 genomes]
rs60094706	0.81[EUR][1000 genomes]
rs60659006	0.80[AMR][1000 genomes]
rs61636608	0.81[EUR][1000 genomes]
rs6591541	1.00[JPT][hapmap]
rs693110	1.00[JPT][hapmap]
rs7112355	1.00[CEU][hapmap]
rs7114773	1.00[JPT][hapmap];0.81[EUR][1000 genomes]
rs7116567	1.00[JPT][hapmap]
rs7119530	1.00[CEU][hapmap]
rs7119778	1.00[CHB][hapmap];1.00[JPT][hapmap];0.81[EUR][1000 genomes]
rs7123969	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs7124813	1.00[JPT][hapmap]
rs7126593	1.00[CHB][hapmap];1.00[JPT][hapmap];0.81[EUR][1000 genomes]
rs7131059	1.00[CHB][hapmap];1.00[JPT][hapmap];0.81[EUR][1000 genomes]
rs73486988	0.81[EUR][1000 genomes]
rs73486997	0.81[EUR][1000 genomes]
rs73488820	0.80[AMR][1000 genomes]
rs73488834	0.81[AMR][1000 genomes]
rs7927187	0.81[AMR][1000 genomes]
rs7929816	1.00[CEU][hapmap]
rs7937245	1.00[CHB][hapmap]
rs7937684	1.00[CHB][hapmap]
rs7941643	0.92[AMR][1000 genomes];0.85[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs7946152	0.81[EUR][1000 genomes]
rs7947036	1.00[CHB][hapmap];1.00[JPT][hapmap];0.81[EUR][1000 genomes]
rs7947514	1.00[CHB][hapmap];1.00[JPT][hapmap];0.81[EUR][1000 genomes]
rs7948041	1.00[CEU][hapmap]
rs7952024	1.00[CHB][hapmap];1.00[JPT][hapmap];0.81[EUR][1000 genomes]
rs8280	1.00[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2752406	chr11:59490424-59529524	Enhancers Weak transcription Active TSS Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Strong transcription Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	15 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:17 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:59495000-59496800	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
2	chr11:59495200-59499000	Enhancers	Primary monocytes fromperipheralblood	blood
3	chr11:59495600-59497000	Enhancers	Primary hematopoietic stem cells short term culture	blood
4	chr11:59495800-59496800	Enhancers	K562	blood
5	chr11:59495800-59497400	Enhancers	Primary hematopoietic stem cells	blood
6	chr11:59496000-59496800	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
7	chr11:59496000-59496800	Flanking Active TSS	Monocytes-CD14+_RO01746	blood
8	chr11:59496000-59497000	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
9	chr11:59496200-59496800	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
10	chr11:59496200-59496800	Enhancers	NHEK	skin
11	chr11:59496200-59497000	Enhancers	HUVEC	blood vessel
12	chr11:59496400-59496800	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
13	chr11:59496400-59496800	Flanking Active TSS	Primary neutrophils fromperipheralblood	blood
14	chr11:59496400-59496800	Enhancers	Primary T cells fromperipheralblood	blood
15	chr11:59496400-59496800	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
16	chr11:59496400-59496800	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
17	chr11:59496400-59496800	Enhancers	HMEC	breast

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