Variant report

Variant	rs7937245
Chromosome Location	chr11:59580834-59580835
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	E2F4	chr11:59580829-59580902	MCF10A-Er-Src	breast:	n/a	n/a

Variant related genes	Relation type
MRPL16	TF binding region

Extended variants
information (count: 113 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:113)

rs_ID	r²[population]
rs10501380	1.00[CHB][hapmap]
rs11230020	1.00[CHB][hapmap]
rs11230037	1.00[CHB][hapmap]
rs1151063	1.00[CHB][hapmap]
rs1151064	1.00[CHB][hapmap]
rs11821465	1.00[CHB][hapmap]
rs12275314	1.00[EUR][1000 genomes]
rs12280446	1.00[EUR][1000 genomes]
rs12280606	1.00[CHB][hapmap]
rs12282618	1.00[EUR][1000 genomes]
rs12292682	1.00[CHB][hapmap]
rs1287111	1.00[CHB][hapmap]
rs1290460	1.00[EUR][1000 genomes]
rs17154025	1.00[CHB][hapmap];1.00[JPT][hapmap];0.87[EUR][1000 genomes]
rs17154134	1.00[CHB][hapmap]
rs17154142	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17154146	1.00[CHB][hapmap]
rs17154165	1.00[CHB][hapmap]
rs17154180	1.00[CHB][hapmap]
rs17154200	1.00[CHB][hapmap]
rs17154203	1.00[CHB][hapmap];1.00[JPT][hapmap];0.86[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs17154205	1.00[CHB][hapmap];1.00[JPT][hapmap];0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17154216	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17154220	0.88[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17154227	1.00[CHB][hapmap]
rs17596862	1.00[CHB][hapmap]
rs17597065	1.00[CHB][hapmap]
rs1938690	1.00[CHB][hapmap]
rs2298589	1.00[JPT][hapmap];1.00[YRI][hapmap];0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2447309	1.00[EUR][1000 genomes]
rs2508335	1.00[CHB][hapmap]
rs2508339	1.00[EUR][1000 genomes]
rs2509274	1.00[CHB][hapmap]
rs2509275	1.00[CHB][hapmap]
rs2509279	1.00[CHB][hapmap]
rs2509290	1.00[CHB][hapmap]
rs2509730	1.00[CHB][hapmap]
rs2927184	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[EUR][1000 genomes]
rs2957227	1.00[EUR][1000 genomes]
rs3110321	1.00[EUR][1000 genomes]
rs35211634	1.00[CHB][hapmap]
rs3781792	1.00[CHB][hapmap]
rs41340150	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs41384548	1.00[CHB][hapmap]
rs4356243	1.00[CHB][hapmap]
rs4393334	1.00[CHB][hapmap]
rs472177	1.00[CHB][hapmap]
rs473679	1.00[EUR][1000 genomes]
rs473912	1.00[EUR][1000 genomes]
rs473979	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[EUR][1000 genomes]
rs475145	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[EUR][1000 genomes]
rs478167	1.00[CHB][hapmap]
rs478924	1.00[EUR][1000 genomes]
rs482355	1.00[CHB][hapmap]
rs482356	1.00[CHB][hapmap]
rs485803	1.00[CHB][hapmap]
rs493025	1.00[EUR][1000 genomes]
rs498099	1.00[CHB][hapmap]
rs498165	1.00[EUR][1000 genomes]
rs501288	1.00[EUR][1000 genomes]
rs504016	1.00[CHB][hapmap]
rs504320	1.00[EUR][1000 genomes]
rs506384	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[EUR][1000 genomes]
rs508411	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[EUR][1000 genomes]
rs511263	1.00[EUR][1000 genomes]
rs512194	1.00[CHB][hapmap]
rs512690	1.00[EUR][1000 genomes]
rs513979	1.00[CHB][hapmap]
rs516912	1.00[CHB][hapmap]
rs519605	1.00[CHB][hapmap]
rs520622	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs523016	1.00[CHB][hapmap]
rs524102	1.00[CHB][hapmap]
rs528525	1.00[CHB][hapmap]
rs529270	1.00[CHB][hapmap]
rs532293	1.00[EUR][1000 genomes]
rs533166	1.00[CHB][hapmap]
rs536544	1.00[CHB][hapmap]
rs537595	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs540684	1.00[CHB][hapmap]
rs549086	1.00[CHB][hapmap]
rs550449	1.00[EUR][1000 genomes]
rs552601	1.00[CHB][hapmap]
rs554460	1.00[EUR][1000 genomes]
rs554848	1.00[CHB][hapmap]
rs555251	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[EUR][1000 genomes]
rs558569	1.00[EUR][1000 genomes]
rs559192	1.00[EUR][1000 genomes]
rs565026	1.00[EUR][1000 genomes]
rs567253	1.00[EUR][1000 genomes]
rs567603	1.00[CHB][hapmap]
rs571451	1.00[EUR][1000 genomes]
rs572138	1.00[EUR][1000 genomes]
rs573592	1.00[CHB][hapmap]
rs577224	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[EUR][1000 genomes]
rs577644	1.00[EUR][1000 genomes]
rs579373	1.00[CHB][hapmap]
rs59057725	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs60146927	1.00[EUR][1000 genomes]
rs60628632	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs60659006	1.00[EUR][1000 genomes]
rs61370741	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61463035	0.86[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs7114773	0.89[YRI][hapmap]
rs7119778	1.00[CHB][hapmap]
rs7123969	1.00[CHB][hapmap]
rs7126593	1.00[CHB][hapmap]
rs7131059	1.00[CHB][hapmap]
rs73488820	1.00[EUR][1000 genomes]
rs7937684	1.00[CHB][hapmap];1.00[JPT][hapmap];0.88[AFR][1000 genomes];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7947036	1.00[CHB][hapmap]
rs7947514	1.00[CHB][hapmap]
rs7952024	1.00[CHB][hapmap]

No data

Chromatin state (count:33 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:59578600-59581600	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
2	chr11:59578600-59581600	Weak transcription	Ovary	ovary
3	chr11:59578800-59581400	Weak transcription	Fetal Thymus	thymus
4	chr11:59578800-59581600	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
5	chr11:59578800-59581600	Weak transcription	Primary B cells from cord blood	blood
6	chr11:59578800-59581600	Weak transcription	Osteobl	bone
7	chr11:59578800-59581800	Weak transcription	H1 Cell Line	embryonic stem cell
8	chr11:59579000-59581000	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
9	chr11:59579000-59581400	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
10	chr11:59579000-59581600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
11	chr11:59579000-59581600	Weak transcription	HUES48 Cell Line	embryonic stem cell
12	chr11:59579000-59581600	Weak transcription	HUES6 Cell Line	embryonic stem cell
13	chr11:59579000-59581600	Weak transcription	HUES64 Cell Line	embryonic stem cell
14	chr11:59579000-59581600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
15	chr11:59579000-59581600	Weak transcription	Primary T helper naive cells from peripheral blood	blood
16	chr11:59579000-59581600	Weak transcription	Fetal Intestine Small	intestine
17	chr11:59579000-59581600	Weak transcription	Thymus	Thymus
18	chr11:59579000-59581600	Weak transcription	HepG2	liver
19	chr11:59579000-59581800	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
20	chr11:59579000-59581800	Weak transcription	iPS-18 Cell Line	embryonic stem cell
21	chr11:59579000-59581800	Weak transcription	K562	blood
22	chr11:59579000-59586200	Weak transcription	Primary T helper cells PMA-I stimulated	--
23	chr11:59579200-59581000	Weak transcription	Primary hematopoietic stem cells	blood
24	chr11:59579200-59581000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
25	chr11:59580200-59581000	Enhancers	H9 Cell Line	embryonic stem cell
26	chr11:59580400-59581000	Weak transcription	Primary hematopoietic stem cells short term culture	blood
27	chr11:59580600-59581000	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
28	chr11:59580600-59581800	Enhancers	iPS-20b Cell Line	embryonic stem cell
29	chr11:59580800-59581000	Enhancers	iPS-15b Cell Line	embryonic stem cell
30	chr11:59580800-59581000	Enhancers	Monocytes-CD14+_RO01746	blood
31	chr11:59580800-59581400	Enhancers	Primary monocytes fromperipheralblood	blood
32	chr11:59580800-59582400	Enhancers	Primary neutrophils fromperipheralblood	blood
33	chr11:59580800-59582400	Enhancers	Dnd41	blood

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