Variant report

Variant	rs567603
Chromosome Location	chr11:59582213-59582214
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 158 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:158)

rs_ID	r²[population]
rs10501380	1.00[JPT][hapmap];0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1121991	0.92[EUR][1000 genomes]
rs11230020	1.00[CEU][hapmap];1.00[JPT][hapmap];0.80[EUR][1000 genomes]
rs11230027	0.80[EUR][1000 genomes]
rs11230037	1.00[CEU][hapmap];1.00[JPT][hapmap];0.88[EUR][1000 genomes]
rs1151063	1.00[CEU][hapmap];1.00[JPT][hapmap];1.00[EUR][1000 genomes]
rs1151064	1.00[CEU][hapmap];1.00[JPT][hapmap];1.00[EUR][1000 genomes]
rs11821333	0.96[EUR][1000 genomes]
rs11821465	1.00[CEU][hapmap];1.00[JPT][hapmap];0.88[EUR][1000 genomes]
rs12272588	0.92[EUR][1000 genomes]
rs12276505	0.86[JPT][hapmap]
rs12278859	0.88[EUR][1000 genomes]
rs12278910	0.80[EUR][1000 genomes]
rs12280606	0.86[CEU][hapmap];0.88[JPT][hapmap];0.88[EUR][1000 genomes]
rs12285828	0.90[EUR][1000 genomes]
rs12287975	0.84[EUR][1000 genomes]
rs12289162	0.88[EUR][1000 genomes]
rs12289921	1.00[CEU][hapmap];0.86[JPT][hapmap]
rs12292682	1.00[CEU][hapmap];1.00[JPT][hapmap];0.92[EUR][1000 genomes]
rs1287111	1.00[CEU][hapmap];1.00[JPT][hapmap];1.00[EUR][1000 genomes]
rs1290457	0.96[EUR][1000 genomes]
rs1290459	0.96[EUR][1000 genomes]
rs17046	0.96[EUR][1000 genomes]
rs17154029	0.96[EUR][1000 genomes]
rs17154134	1.00[CEU][hapmap];1.00[JPT][hapmap];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17154138	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17154146	1.00[CEU][hapmap];1.00[JPT][hapmap];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17154149	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17154157	1.00[CEU][hapmap];1.00[JPT][hapmap];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17154165	1.00[CEU][hapmap];1.00[JPT][hapmap];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17154169	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17154175	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17154180	1.00[CEU][hapmap];1.00[JPT][hapmap];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17154195	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17154200	1.00[CEU][hapmap];1.00[JPT][hapmap];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17154205	1.00[CHB][hapmap]
rs17154222	0.82[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs17154227	1.00[CEU][hapmap];1.00[JPT][hapmap];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17154234	1.00[CEU][hapmap]
rs1938690	1.00[CEU][hapmap];1.00[JPT][hapmap];0.88[EUR][1000 genomes]
rs2186597	0.92[EUR][1000 genomes]
rs2298589	1.00[CHB][hapmap]
rs2447310	0.81[EUR][1000 genomes]
rs2508335	1.00[JPT][hapmap];0.81[EUR][1000 genomes]
rs2509274	1.00[CEU][hapmap];1.00[JPT][hapmap];1.00[EUR][1000 genomes]
rs2509275	1.00[CEU][hapmap];1.00[JPT][hapmap];0.98[EUR][1000 genomes]
rs2509276	1.00[EUR][1000 genomes]
rs2509279	1.00[JPT][hapmap];0.81[EUR][1000 genomes]
rs2509290	1.00[CEU][hapmap];1.00[JPT][hapmap];0.96[EUR][1000 genomes]
rs2509730	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.81[YRI][hapmap];0.87[AFR][1000 genomes];0.85[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2927182	0.85[EUR][1000 genomes]
rs2927183	0.96[EUR][1000 genomes]
rs2957223	0.96[EUR][1000 genomes]
rs3110322	0.96[EUR][1000 genomes]
rs3132748	0.96[EUR][1000 genomes]
rs34350918	0.88[EUR][1000 genomes]
rs35211634	1.00[CEU][hapmap]
rs3781792	1.00[CEU][hapmap];1.00[JPT][hapmap];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3781793	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3862660	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs41384548	1.00[CEU][hapmap];1.00[JPT][hapmap];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4301803	0.92[EUR][1000 genomes]
rs4356243	1.00[CEU][hapmap];1.00[JPT][hapmap];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4393334	1.00[CEU][hapmap];1.00[JPT][hapmap];0.92[EUR][1000 genomes]
rs4515985	0.92[EUR][1000 genomes]
rs471369	0.81[EUR][1000 genomes]
rs472152	0.81[EUR][1000 genomes]
rs472177	1.00[CEU][hapmap];1.00[JPT][hapmap];0.96[EUR][1000 genomes]
rs473087	0.96[EUR][1000 genomes]
rs474844	0.96[EUR][1000 genomes]
rs475706	0.96[EUR][1000 genomes]
rs477577	0.81[EUR][1000 genomes]
rs477729	0.81[EUR][1000 genomes]
rs478167	1.00[CEU][hapmap];1.00[JPT][hapmap];0.81[YRI][hapmap];0.84[AFR][1000 genomes];0.87[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs479264	0.85[EUR][1000 genomes]
rs481893	0.81[EUR][1000 genomes]
rs482355	1.00[CEU][hapmap];1.00[JPT][hapmap];1.00[EUR][1000 genomes]
rs482356	1.00[CEU][hapmap];1.00[JPT][hapmap];0.87[AFR][1000 genomes];0.87[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs484030	0.81[EUR][1000 genomes]
rs484814	0.85[EUR][1000 genomes]
rs484895	0.96[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs485008	1.00[EUR][1000 genomes]
rs485803	1.00[JPT][hapmap];0.81[EUR][1000 genomes]
rs486587	1.00[EUR][1000 genomes]
rs492652	0.96[EUR][1000 genomes]
rs494110	0.81[EUR][1000 genomes]
rs496938	0.81[EUR][1000 genomes]
rs497596	0.85[EUR][1000 genomes]
rs498099	1.00[JPT][hapmap];0.81[EUR][1000 genomes]
rs498299	0.81[EUR][1000 genomes]
rs498388	0.96[EUR][1000 genomes]
rs499054	0.81[EUR][1000 genomes]
rs504016	1.00[CEU][hapmap];1.00[JPT][hapmap];1.00[EUR][1000 genomes]
rs507235	1.00[EUR][1000 genomes]
rs510122	1.00[EUR][1000 genomes]
rs511785	1.00[EUR][1000 genomes]
rs511957	0.96[EUR][1000 genomes]
rs512194	1.00[CEU][hapmap];1.00[JPT][hapmap];0.92[EUR][1000 genomes]
rs512695	1.00[EUR][1000 genomes]
rs513979	1.00[JPT][hapmap];0.81[EUR][1000 genomes]
rs516912	1.00[CEU][hapmap];1.00[JPT][hapmap];0.80[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs519605	1.00[CEU][hapmap];1.00[JPT][hapmap];1.00[EUR][1000 genomes]
rs521330	1.00[EUR][1000 genomes]
rs523016	1.00[CEU][hapmap];1.00[JPT][hapmap];1.00[EUR][1000 genomes]
rs524102	1.00[JPT][hapmap];0.81[EUR][1000 genomes]
rs526672	0.81[EUR][1000 genomes]
rs528525	1.00[CEU][hapmap];1.00[JPT][hapmap];0.81[YRI][hapmap];0.85[AFR][1000 genomes];0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs529270	1.00[CEU][hapmap];1.00[JPT][hapmap];1.00[EUR][1000 genomes]
rs533166	1.00[JPT][hapmap];0.85[EUR][1000 genomes]
rs536544	1.00[JPT][hapmap];0.85[EUR][1000 genomes]
rs537625	0.96[EUR][1000 genomes]
rs538169	0.81[EUR][1000 genomes]
rs540684	1.00[CEU][hapmap];1.00[JPT][hapmap];0.96[EUR][1000 genomes]
rs549086	1.00[JPT][hapmap];0.85[EUR][1000 genomes]
rs550189	0.96[EUR][1000 genomes]
rs552601	1.00[CEU][hapmap];1.00[JPT][hapmap];0.96[EUR][1000 genomes]
rs554149	0.96[EUR][1000 genomes]
rs554848	1.00[CEU][hapmap];1.00[JPT][hapmap];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs555175	1.00[EUR][1000 genomes]
rs55667192	0.80[EUR][1000 genomes]
rs561029	0.81[EUR][1000 genomes]
rs562657	0.81[EUR][1000 genomes]
rs563267	0.81[EUR][1000 genomes]
rs563800	0.85[EUR][1000 genomes]
rs565983	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs567485	1.00[EUR][1000 genomes]
rs569326	1.00[EUR][1000 genomes]
rs573592	1.00[CEU][hapmap];1.00[JPT][hapmap];0.85[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs57529518	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs57871852	1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs579192	0.96[EUR][1000 genomes]
rs579373	1.00[CEU][hapmap];1.00[JPT][hapmap];1.00[EUR][1000 genomes]
rs580242	0.96[EUR][1000 genomes]
rs581265	0.81[EUR][1000 genomes]
rs58169611	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs58775794	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs60009036	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs60094706	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61636608	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7108731	0.81[EUR][1000 genomes]
rs7114773	1.00[CEU][hapmap];1.00[JPT][hapmap];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7117509	1.00[CEU][hapmap];0.85[EUR][1000 genomes]
rs7119778	1.00[CEU][hapmap];1.00[JPT][hapmap];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7123969	1.00[CEU][hapmap];1.00[JPT][hapmap];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7126593	1.00[CEU][hapmap];1.00[JPT][hapmap];0.92[EUR][1000 genomes]
rs7131059	1.00[CEU][hapmap];1.00[JPT][hapmap];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73486962	0.88[EUR][1000 genomes]
rs73486971	0.88[EUR][1000 genomes]
rs73486979	0.88[EUR][1000 genomes]
rs73486988	0.92[EUR][1000 genomes]
rs73486997	0.92[EUR][1000 genomes]
rs7933970	0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7937245	1.00[CHB][hapmap]
rs7941643	0.96[EUR][1000 genomes]
rs7946152	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7947036	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7947514	1.00[CEU][hapmap];1.00[JPT][hapmap];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7952024	1.00[CEU][hapmap];1.00[JPT][hapmap];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]

No data

Chromatin state (count:28 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:59579000-59586200	Weak transcription	Primary T helper cells PMA-I stimulated	--
2	chr11:59580800-59582400	Enhancers	Primary neutrophils fromperipheralblood	blood
3	chr11:59580800-59582400	Enhancers	Dnd41	blood
4	chr11:59581000-59583000	Weak transcription	H9 Cell Line	embryonic stem cell
5	chr11:59581000-59583000	Enhancers	Primary hematopoietic stem cells short term culture	blood
6	chr11:59581400-59582600	Enhancers	iPS-15b Cell Line	embryonic stem cell
7	chr11:59581600-59582400	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
8	chr11:59581600-59582800	Enhancers	ES-I3 Cell Line	embryonic stem cell
9	chr11:59581800-59582400	Enhancers	H1 Cell Line	embryonic stem cell
10	chr11:59581800-59582800	Flanking Active TSS	iPS-20b Cell Line	embryonic stem cell
11	chr11:59581800-59584800	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
12	chr11:59581800-59585000	Enhancers	K562	blood
13	chr11:59582000-59582600	Weak transcription	Fetal Thymus	thymus
14	chr11:59582000-59583000	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
15	chr11:59582000-59583200	Weak transcription	Ovary	ovary
16	chr11:59582000-59583600	Flanking Active TSS	HUES64 Cell Line	embryonic stem cell
17	chr11:59582000-59585600	Weak transcription	Primary B cells from cord blood	blood
18	chr11:59582000-59586000	Weak transcription	Thymus	Thymus
19	chr11:59582000-59586200	Weak transcription	Primary T cells fromperipheralblood	blood
20	chr11:59582000-59586200	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
21	chr11:59582000-59588000	Enhancers	Primary hematopoietic stem cells	blood
22	chr11:59582000-59588800	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
23	chr11:59582200-59582400	Active TSS	HUES48 Cell Line	embryonic stem cell
24	chr11:59582200-59582600	Enhancers	HUES6 Cell Line	embryonic stem cell
25	chr11:59582200-59582600	Flanking Active TSS	iPS-18 Cell Line	embryonic stem cell
26	chr11:59582200-59585800	Weak transcription	Monocytes-CD14+_RO01746	blood
27	chr11:59582200-59586000	Weak transcription	Primary monocytes fromperipheralblood	blood
28	chr11:59582200-59586000	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--

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