Variant report

Variant	rs484030
Chromosome Location	chr11:59520050-59520051
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr11:59513939..59516832-chr11:59518797..59521533,2	K562	blood:
2	chr11:59519722..59526041-chr11:59575307..59578961,7	MCF-7	breast:

Variant related genes	Relation type
ENSG00000255538	Chromatin interaction
ENSG00000166902	Chromatin interaction

Extended variants
information (count: 122 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:120)

rs_ID	r²[population]
rs1151063	0.82[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs1151064	0.81[EUR][1000 genomes]
rs11821333	0.81[EUR][1000 genomes]
rs1287111	0.82[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs1290457	0.81[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs1290459	0.81[EUR][1000 genomes]
rs17046	0.81[EUR][1000 genomes]
rs17154029	0.81[EUR][1000 genomes]
rs17154134	0.81[EUR][1000 genomes]
rs17154138	0.81[EUR][1000 genomes]
rs17154146	0.81[EUR][1000 genomes]
rs17154149	0.81[EUR][1000 genomes]
rs17154157	0.81[EUR][1000 genomes]
rs17154165	0.81[EUR][1000 genomes]
rs17154169	0.81[EUR][1000 genomes]
rs17154175	0.81[EUR][1000 genomes]
rs17154180	0.81[EUR][1000 genomes]
rs17154195	0.81[EUR][1000 genomes]
rs17154200	0.81[EUR][1000 genomes]
rs17154222	0.81[EUR][1000 genomes]
rs2447310	0.82[AMR][1000 genomes]
rs2508335	0.87[AMR][1000 genomes]
rs2509274	0.88[AFR][1000 genomes];0.87[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs2509275	0.88[AFR][1000 genomes];0.87[AMR][1000 genomes]
rs2509276	0.83[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs2509279	0.84[AMR][1000 genomes]
rs2509290	0.81[EUR][1000 genomes]
rs2509730	0.81[EUR][1000 genomes]
rs2927182	0.80[AFR][1000 genomes];0.86[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs2927183	0.87[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs3110322	0.81[EUR][1000 genomes]
rs3132748	0.81[EUR][1000 genomes]
rs3781792	0.81[EUR][1000 genomes]
rs3781793	0.81[EUR][1000 genomes]
rs3862660	0.81[EUR][1000 genomes]
rs41384548	0.81[EUR][1000 genomes]
rs471369	0.84[AMR][1000 genomes]
rs472152	0.82[AMR][1000 genomes]
rs472177	0.81[EUR][1000 genomes]
rs473087	0.84[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs474844	0.81[EUR][1000 genomes]
rs475706	0.84[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs475800	0.86[AMR][1000 genomes]
rs477577	0.82[AMR][1000 genomes]
rs477729	0.82[AMR][1000 genomes]
rs478167	0.81[EUR][1000 genomes]
rs479264	0.80[AFR][1000 genomes];0.87[AMR][1000 genomes]
rs481893	0.84[AMR][1000 genomes]
rs482355	0.81[EUR][1000 genomes]
rs482356	0.81[EUR][1000 genomes]
rs484083	0.96[AFR][1000 genomes];0.95[AMR][1000 genomes];0.86[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs484814	0.81[AFR][1000 genomes];0.87[AMR][1000 genomes]
rs484895	0.81[EUR][1000 genomes]
rs485008	0.81[EUR][1000 genomes]
rs485803	0.82[AMR][1000 genomes]
rs486587	0.80[AFR][1000 genomes];0.87[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs492652	0.81[EUR][1000 genomes]
rs494110	0.82[AMR][1000 genomes]
rs496938	0.82[AMR][1000 genomes]
rs497596	0.84[AMR][1000 genomes]
rs498099	0.82[AMR][1000 genomes]
rs498299	0.84[AMR][1000 genomes]
rs498388	0.81[EUR][1000 genomes]
rs499054	0.84[AMR][1000 genomes]
rs504016	0.82[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs507235	0.83[AFR][1000 genomes];0.87[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs510122	0.87[AFR][1000 genomes];0.87[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs511785	0.87[AFR][1000 genomes];0.87[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs511957	0.81[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs512695	0.81[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs513979	0.82[AMR][1000 genomes]
rs516912	0.81[EUR][1000 genomes]
rs519605	0.81[AFR][1000 genomes];0.87[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs521330	0.81[EUR][1000 genomes]
rs523016	0.81[EUR][1000 genomes]
rs524102	0.82[AMR][1000 genomes]
rs526672	0.82[AMR][1000 genomes]
rs528525	0.81[EUR][1000 genomes]
rs529270	0.81[EUR][1000 genomes]
rs533166	0.84[AMR][1000 genomes]
rs536544	0.84[AMR][1000 genomes]
rs537625	0.82[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs538169	0.84[AMR][1000 genomes]
rs540684	0.81[EUR][1000 genomes]
rs540989	0.81[AMR][1000 genomes]
rs549086	0.87[AMR][1000 genomes]
rs550189	0.84[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs552601	0.84[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs554149	0.81[EUR][1000 genomes]
rs554848	0.81[EUR][1000 genomes]
rs555175	0.88[AFR][1000 genomes];0.87[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs561029	0.87[AMR][1000 genomes]
rs562657	0.84[AMR][1000 genomes]
rs563267	0.84[AMR][1000 genomes]
rs563800	0.82[AFR][1000 genomes];0.87[AMR][1000 genomes]
rs565983	0.81[EUR][1000 genomes]
rs567485	0.87[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs567603	0.81[EUR][1000 genomes]
rs569326	0.86[AFR][1000 genomes];0.87[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs573592	0.81[EUR][1000 genomes]
rs57529518	0.81[EUR][1000 genomes]
rs57871852	0.81[EUR][1000 genomes]
rs579192	0.81[EUR][1000 genomes]
rs579373	0.81[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs580242	0.83[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs58169611	0.81[EUR][1000 genomes]
rs58775794	0.81[EUR][1000 genomes]
rs60009036	0.81[EUR][1000 genomes]
rs60094706	0.81[EUR][1000 genomes]
rs61636608	0.81[EUR][1000 genomes]
rs7108731	0.82[EUR][1000 genomes]
rs7114773	0.81[EUR][1000 genomes]
rs7117509	0.82[EUR][1000 genomes]
rs7119778	0.81[EUR][1000 genomes]
rs7131059	0.81[EUR][1000 genomes]
rs7941643	0.81[EUR][1000 genomes]
rs7946152	0.81[EUR][1000 genomes]
rs7947036	0.81[EUR][1000 genomes]
rs7947514	0.81[EUR][1000 genomes]
rs7952024	0.81[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2752406	chr11:59490424-59529524	Enhancers Weak transcription Active TSS Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Strong transcription Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	15 gene(s)	inside rSNPs	n/a
2	esv2755215	chr11:59515524-59529524	Active TSS Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Strong transcription Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:59517000-59521200	Weak transcription	K562	blood
2	chr11:59517800-59521200	Weak transcription	Stomach Smooth Muscle	stomach
3	chr11:59518600-59521000	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
4	chr11:59519000-59521600	Enhancers	Primary neutrophils fromperipheralblood	blood
5	chr11:59519200-59520400	Weak transcription	Fetal Intestine Small	intestine
6	chr11:59519200-59521200	Weak transcription	Duodenum Mucosa	Duodenum
7	chr11:59519600-59521600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
8	chr11:59520000-59521600	Weak transcription	Rectal Mucosa Donor 31	rectum

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