Variant report

Variant	rs475800
Chromosome Location	chr11:59486728-59486729
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr11:59484147..59487033-chr11:59487172..59488881,2	MCF-7	breast:
2	chr11:59484450..59486779-chr11:59573613..59575249,2	K562	blood:
3	chr11:59484717..59486991-chr11:59487647..59489651,2	K562	blood:

Extended variants
information (count: 104 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:104)

rs_ID	r²[population]
rs10501380	0.90[EUR][1000 genomes]
rs11230036	0.83[EUR][1000 genomes]
rs1151063	0.82[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs1151064	0.81[ASN][1000 genomes]
rs11821333	0.81[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs12276505	0.86[EUR][1000 genomes]
rs12287696	0.83[EUR][1000 genomes]
rs12290453	0.83[EUR][1000 genomes]
rs12291415	0.83[EUR][1000 genomes]
rs1287111	0.82[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs1287449	0.84[EUR][1000 genomes]
rs1290457	0.81[AMR][1000 genomes];0.81[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs1290459	0.81[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs17046	0.83[AMR][1000 genomes];0.81[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs17154005	0.83[EUR][1000 genomes]
rs17154029	0.81[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs17154053	0.87[EUR][1000 genomes]
rs17509520	0.83[EUR][1000 genomes]
rs17510841	0.83[EUR][1000 genomes]
rs17511545	0.83[EUR][1000 genomes]
rs17511686	0.83[EUR][1000 genomes]
rs17593836	0.83[EUR][1000 genomes]
rs17594827	0.87[EUR][1000 genomes]
rs17596359	0.83[EUR][1000 genomes]
rs2085962	0.83[EUR][1000 genomes]
rs2447310	0.91[AMR][1000 genomes];0.95[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs2508335	0.87[AMR][1000 genomes];0.95[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs2509274	0.87[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs2509275	0.87[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs2509276	0.83[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs2509279	0.86[AFR][1000 genomes];0.89[AMR][1000 genomes];0.95[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs2509290	0.81[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs2927182	0.90[AMR][1000 genomes]
rs2927183	0.87[AMR][1000 genomes];0.81[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs2957223	0.84[AMR][1000 genomes]
rs3110321	0.83[AMR][1000 genomes]
rs3110322	0.81[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs3132748	0.81[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs471369	0.86[AFR][1000 genomes];0.89[AMR][1000 genomes];0.95[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs472152	0.86[AFR][1000 genomes];0.91[AMR][1000 genomes];0.95[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs472177	0.81[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs473087	0.89[AMR][1000 genomes];0.81[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs474844	0.81[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs475706	0.89[AMR][1000 genomes];0.81[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs477577	0.88[AFR][1000 genomes];0.91[AMR][1000 genomes];0.95[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs477729	0.91[AMR][1000 genomes];0.95[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs479264	0.87[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs481893	0.86[AFR][1000 genomes];0.89[AMR][1000 genomes];0.95[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs482355	0.81[ASN][1000 genomes]
rs484030	0.86[AMR][1000 genomes]
rs484083	0.81[AMR][1000 genomes]
rs484814	0.87[AMR][1000 genomes];0.90[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs485008	0.81[ASN][1000 genomes]
rs485803	0.90[AFR][1000 genomes];0.91[AMR][1000 genomes];0.95[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs486587	0.87[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs492652	0.83[AMR][1000 genomes];0.81[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs494110	0.90[AFR][1000 genomes];0.91[AMR][1000 genomes];0.95[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs496938	0.87[AMR][1000 genomes];0.95[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs497596	0.89[AMR][1000 genomes];0.90[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs498099	0.87[AMR][1000 genomes];0.95[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs498299	0.86[AFR][1000 genomes];0.89[AMR][1000 genomes];0.95[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs498388	0.81[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs499054	0.86[AFR][1000 genomes];0.89[AMR][1000 genomes];0.95[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs504016	0.82[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs507235	0.87[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs510122	0.87[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs511785	0.87[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs511957	0.85[AMR][1000 genomes];0.81[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs512194	0.83[AMR][1000 genomes]
rs512695	0.81[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs513979	0.91[AMR][1000 genomes];0.95[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs519605	0.87[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs521330	0.81[ASN][1000 genomes]
rs523016	0.81[ASN][1000 genomes]
rs524102	0.91[AMR][1000 genomes];0.95[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs526672	0.87[AMR][1000 genomes];0.95[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs529270	0.81[ASN][1000 genomes]
rs533166	0.89[AMR][1000 genomes];0.90[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs536544	0.89[AMR][1000 genomes];0.90[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs537625	0.91[AMR][1000 genomes];0.81[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs538169	0.86[AFR][1000 genomes];0.89[AMR][1000 genomes];0.95[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs540684	0.83[AMR][1000 genomes];0.81[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs540989	0.94[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs549086	0.87[AMR][1000 genomes];0.90[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs550189	0.89[AMR][1000 genomes];0.81[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs552601	0.89[AMR][1000 genomes];0.81[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs554149	0.81[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs555175	0.87[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs561029	0.87[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs562657	0.86[AFR][1000 genomes];0.89[AMR][1000 genomes];0.95[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs563267	0.86[AFR][1000 genomes];0.89[AMR][1000 genomes];0.95[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs563800	0.87[AMR][1000 genomes];0.90[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs567485	0.87[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs569326	0.87[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs579192	0.81[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs579373	0.81[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs580242	0.83[AMR][1000 genomes];0.81[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs581265	0.85[AFR][1000 genomes];0.85[AMR][1000 genomes];0.95[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs7101580	0.83[EUR][1000 genomes]
rs7112355	0.83[EUR][1000 genomes]
rs7119530	0.83[EUR][1000 genomes]
rs7929816	0.83[EUR][1000 genomes]
rs7941643	0.81[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs997788	0.83[EUR][1000 genomes]

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:59478200-59489600	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin

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