Variant report

Variant	rs17511545
Chromosome Location	chr11:59565021-59565022
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr11:59562792..59565690-chr11:59576632..59578850,2	K562	blood:
2	chr1:38384503..38385314-chr11:59564892..59565733,2	MCF-7	breast:
3	chr11:59557765..59559673-chr11:59564880..59566549,2	K562	blood:
4	chr11:59524086..59527100-chr11:59562036..59566257,3	K562	blood:

Variant related genes	Relation type
ENSG00000166902	Chromatin interaction

Extended variants
information (count: 44 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:44)

rs_ID	r²[population]
rs10501380	1.00[CEU][hapmap];0.83[EUR][1000 genomes]
rs11230019	0.84[EUR][1000 genomes]
rs11230036	1.00[CEU][hapmap];1.00[JPT][hapmap];0.89[EUR][1000 genomes]
rs12276505	1.00[CEU][hapmap]
rs12287696	1.00[CEU][hapmap];1.00[JPT][hapmap];0.89[EUR][1000 genomes]
rs12290453	1.00[CEU][hapmap];1.00[JPT][hapmap];0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12291415	0.89[EUR][1000 genomes]
rs17154005	0.89[EUR][1000 genomes]
rs17154053	0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17154234	1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs17508845	1.00[CEU][hapmap];1.00[JPT][hapmap];0.84[EUR][1000 genomes]
rs17509520	0.83[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs17510841	1.00[CEU][hapmap];1.00[JPT][hapmap];0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17511686	1.00[CEU][hapmap];1.00[JPT][hapmap];0.83[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17593682	1.00[CEU][hapmap];1.00[JPT][hapmap];0.84[EUR][1000 genomes]
rs17593836	1.00[CEU][hapmap];1.00[JPT][hapmap];0.89[EUR][1000 genomes]
rs17594827	0.83[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17596359	1.00[CEU][hapmap];1.00[JPT][hapmap];0.83[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17596862	1.00[CEU][hapmap];0.92[EUR][1000 genomes]
rs17597065	1.00[CEU][hapmap];0.86[EUR][1000 genomes]
rs17597092	1.00[CEU][hapmap];0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2085962	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2508335	1.00[CEU][hapmap]
rs2509279	1.00[CEU][hapmap]
rs475800	0.83[EUR][1000 genomes]
rs479264	0.83[EUR][1000 genomes]
rs484814	0.83[EUR][1000 genomes]
rs485803	1.00[CEU][hapmap]
rs497596	0.83[EUR][1000 genomes]
rs498099	1.00[CEU][hapmap]
rs513979	1.00[CEU][hapmap]
rs524102	1.00[CEU][hapmap]
rs533166	1.00[CEU][hapmap];0.83[EUR][1000 genomes]
rs536544	1.00[CEU][hapmap];0.83[EUR][1000 genomes]
rs540989	0.83[EUR][1000 genomes]
rs549086	1.00[CEU][hapmap];0.83[EUR][1000 genomes]
rs563800	0.83[EUR][1000 genomes]
rs7101580	0.89[EUR][1000 genomes]
rs7108731	1.00[ASN][1000 genomes]
rs7112355	1.00[CEU][hapmap];1.00[JPT][hapmap];0.89[EUR][1000 genomes]
rs7117509	1.00[JPT][hapmap];0.83[AMR][1000 genomes];0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7119530	1.00[CEU][hapmap];1.00[JPT][hapmap];0.83[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7929816	1.00[CEU][hapmap];1.00[JPT][hapmap];0.83[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs997788	0.83[AMR][1000 genomes];0.89[EUR][1000 genomes]

No data

Chromatin state (count:117 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:59524600-59573800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
2	chr11:59534600-59571600	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
3	chr11:59537600-59570400	Weak transcription	Fetal Kidney	kidney
4	chr11:59541000-59573600	Weak transcription	Primary T helper cells PMA-I stimulated	--
5	chr11:59542200-59571400	Weak transcription	Thymus	Thymus
6	chr11:59544400-59573200	Weak transcription	Psoas Muscle	Psoas
7	chr11:59546400-59568800	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
8	chr11:59551400-59572800	Weak transcription	Dnd41	blood
9	chr11:59551600-59573600	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
10	chr11:59551600-59576600	Weak transcription	Primary T killer memory cells from peripheral blood	blood
11	chr11:59551600-59577200	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
12	chr11:59552000-59573000	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
13	chr11:59554200-59565200	Strong transcription	Primary T cells from cord blood	blood
14	chr11:59554200-59565600	Strong transcription	iPS-18 Cell Line	embryonic stem cell
15	chr11:59554200-59565600	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
16	chr11:59554400-59565600	Strong transcription	H1 Cell Line	embryonic stem cell
17	chr11:59554400-59569000	Strong transcription	HUES6 Cell Line	embryonic stem cell
18	chr11:59554600-59565200	Strong transcription	H9 Cell Line	embryonic stem cell
19	chr11:59554600-59565800	Strong transcription	HUES48 Cell Line	embryonic stem cell
20	chr11:59554600-59569000	Strong transcription	HUES64 Cell Line	embryonic stem cell
21	chr11:59554800-59565800	Strong transcription	Primary hematopoietic stem cells short term culture	blood
22	chr11:59554800-59568800	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
23	chr11:59554800-59576400	Strong transcription	Primary monocytes fromperipheralblood	blood
24	chr11:59554800-59576400	Strong transcription	Monocytes-CD14+_RO01746	blood
25	chr11:59555000-59566600	Strong transcription	Primary mononuclear cells fromperipheralblood	Blood
26	chr11:59555000-59567800	Strong transcription	Foreskin Melanocyte Primary Cells skin03	Skin
27	chr11:59555000-59573800	Weak transcription	Small Intestine	intestine
28	chr11:59555000-59576800	Strong transcription	Primary neutrophils fromperipheralblood	blood
29	chr11:59555200-59565800	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
30	chr11:59555200-59566000	Strong transcription	Duodenum Smooth Muscle	Duodenum
31	chr11:59555400-59565200	Strong transcription	Primary B cells from cord blood	blood
32	chr11:59555400-59565800	Strong transcription	Rectal Mucosa Donor 29	rectum
33	chr11:59555400-59566000	Strong transcription	Sigmoid Colon	Sigmoid Colon
34	chr11:59555600-59565400	Strong transcription	Duodenum Mucosa	Duodenum
35	chr11:59555600-59565800	Strong transcription	Rectal Mucosa Donor 31	rectum
36	chr11:59555600-59567000	Strong transcription	Fetal Intestine Small	intestine
37	chr11:59555600-59567200	Strong transcription	Fetal Intestine Large	intestine
38	chr11:59555600-59569600	Weak transcription	Right Atrium	heart
39	chr11:59555600-59576600	Strong transcription	Placenta	Placenta
40	chr11:59555800-59565200	Strong transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
41	chr11:59555800-59569000	Strong transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
42	chr11:59555800-59569200	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
43	chr11:59555800-59573600	Weak transcription	HSMM	muscle
44	chr11:59556000-59565800	Strong transcription	Foreskin Fibroblast Primary Cells skin01	Skin
45	chr11:59556000-59566400	Strong transcription	Foreskin Melanocyte Primary Cells skin01	Skin
46	chr11:59556000-59577000	Weak transcription	Fetal Heart	heart
47	chr11:59556200-59565400	Strong transcription	Left Ventricle	heart
48	chr11:59556200-59565600	Strong transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
49	chr11:59556400-59565400	Strong transcription	Pancreas	Pancrea
50	chr11:59556400-59569000	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived

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