Variant report

Variant	rs17511686
Chromosome Location	chr11:59569884-59569885
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:14)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:14 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr11:59569788..59570640-chr11:59686271..59687396,4	K562	blood:
2	chr11:59521037..59522134-chr11:59569735..59571070,7	MCF-7	breast:
3	chr11:59521189..59522029-chr11:59569757..59570741,3	K562	blood:
4	chr11:59568062..59571452-chr11:59575621..59577818,3	MCF-7	breast:
5	chr11:59447806..59448672-chr11:59569775..59570386,2	MCF-7	breast:
6	chr11:59567507..59571426-chr11:59571607..59574837,4	MCF-7	breast:
7	chr11:59520634..59522259-chr11:59568757..59570737,15	MCF-7	breast:
8	chr11:59559044..59561942-chr11:59568536..59570809,2	K562	blood:
9	chr11:59559044..59563434-chr11:59567753..59571194,4	K562	blood:
10	chr11:59520892..59524346-chr11:59566262..59571236,10	MCF-7	breast:
11	chr11:59567961..59570706-chr11:59575897..59577810,2	MCF-7	breast:
12	chr11:59519179..59526050-chr11:59565310..59570378,11	MCF-7	breast:
13	chr11:59535283..59538247-chr11:59566815..59570479,3	K562	blood:
14	chr11:59328551..59330174-chr11:59567644..59570291,2	K562	blood:

No data

Variant related genes	Relation type
ENSG00000254477	Chromatin interaction
ENSG00000166902	Chromatin interaction
ENSG00000166900	Chromatin interaction

Extended variants
information (count: 44 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:44)

rs_ID	r²[population]
rs10501380	1.00[CEU][hapmap];0.83[EUR][1000 genomes]
rs11230019	0.84[EUR][1000 genomes]
rs11230036	1.00[CEU][hapmap];1.00[JPT][hapmap];0.89[EUR][1000 genomes]
rs12276505	1.00[CEU][hapmap]
rs12287696	1.00[CEU][hapmap];1.00[JPT][hapmap];0.89[EUR][1000 genomes]
rs12290453	1.00[CEU][hapmap];1.00[JPT][hapmap];0.83[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12291415	0.89[EUR][1000 genomes]
rs17154005	0.89[EUR][1000 genomes]
rs17154053	0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17154234	1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs17508845	1.00[CEU][hapmap];1.00[JPT][hapmap];0.83[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs17509520	1.00[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs17510841	1.00[CEU][hapmap];1.00[JPT][hapmap];0.83[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17511545	1.00[CEU][hapmap];1.00[JPT][hapmap];0.83[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17593682	1.00[CEU][hapmap];1.00[JPT][hapmap];0.83[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs17593836	1.00[CEU][hapmap];1.00[JPT][hapmap];0.83[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs17594827	1.00[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17596359	1.00[CEU][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17596862	1.00[CEU][hapmap];0.92[EUR][1000 genomes]
rs17597065	1.00[CEU][hapmap];0.86[EUR][1000 genomes]
rs17597092	1.00[CEU][hapmap];0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2085962	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2508335	1.00[CEU][hapmap]
rs2509279	1.00[CEU][hapmap]
rs475800	0.83[EUR][1000 genomes]
rs479264	0.83[EUR][1000 genomes]
rs484814	0.83[EUR][1000 genomes]
rs485803	1.00[CEU][hapmap]
rs497596	0.83[EUR][1000 genomes]
rs498099	1.00[CEU][hapmap]
rs513979	1.00[CEU][hapmap]
rs524102	1.00[CEU][hapmap]
rs533166	1.00[CEU][hapmap];0.83[EUR][1000 genomes]
rs536544	1.00[CEU][hapmap];0.83[EUR][1000 genomes]
rs540989	0.83[EUR][1000 genomes]
rs549086	1.00[CEU][hapmap];0.83[EUR][1000 genomes]
rs563800	0.83[EUR][1000 genomes]
rs7101580	0.83[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs7108731	1.00[ASN][1000 genomes]
rs7112355	1.00[CEU][hapmap];1.00[JPT][hapmap];0.83[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs7117509	1.00[JPT][hapmap];1.00[AMR][1000 genomes];0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7119530	1.00[CEU][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7929816	1.00[CEU][hapmap];1.00[JPT][hapmap];1.00[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs997788	1.00[AMR][1000 genomes];0.89[EUR][1000 genomes]

No data

Chromatin state (count:123 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:59524600-59573800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
2	chr11:59534600-59571600	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
3	chr11:59537600-59570400	Weak transcription	Fetal Kidney	kidney
4	chr11:59541000-59573600	Weak transcription	Primary T helper cells PMA-I stimulated	--
5	chr11:59542200-59571400	Weak transcription	Thymus	Thymus
6	chr11:59544400-59573200	Weak transcription	Psoas Muscle	Psoas
7	chr11:59551400-59572800	Weak transcription	Dnd41	blood
8	chr11:59551600-59573600	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
9	chr11:59551600-59576600	Weak transcription	Primary T killer memory cells from peripheral blood	blood
10	chr11:59551600-59577200	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
11	chr11:59552000-59573000	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
12	chr11:59554800-59576400	Strong transcription	Primary monocytes fromperipheralblood	blood
13	chr11:59554800-59576400	Strong transcription	Monocytes-CD14+_RO01746	blood
14	chr11:59555000-59573800	Weak transcription	Small Intestine	intestine
15	chr11:59555000-59576800	Strong transcription	Primary neutrophils fromperipheralblood	blood
16	chr11:59555600-59576600	Strong transcription	Placenta	Placenta
17	chr11:59555800-59573600	Weak transcription	HSMM	muscle
18	chr11:59556000-59577000	Weak transcription	Fetal Heart	heart
19	chr11:59558800-59571800	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
20	chr11:59559800-59571400	Weak transcription	Primary T cells fromperipheralblood	blood
21	chr11:59561000-59573600	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
22	chr11:59561000-59573800	Weak transcription	Placenta Amnion	Placenta Amnion
23	chr11:59561200-59571600	Weak transcription	Primary T helper cells fromperipheralblood	blood
24	chr11:59561600-59573000	Weak transcription	Brain Germinal Matrix	brain
25	chr11:59561800-59573000	Weak transcription	Fetal Muscle Trunk	muscle
26	chr11:59562200-59571000	Weak transcription	Fetal Muscle Leg	muscle
27	chr11:59562400-59571400	Weak transcription	NH-A	brain
28	chr11:59562600-59571800	Weak transcription	Fetal Thymus	thymus
29	chr11:59563400-59570600	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
30	chr11:59563400-59571600	Weak transcription	iPS-15b Cell Line	embryonic stem cell
31	chr11:59563400-59573800	Weak transcription	HSMMtube	muscle
32	chr11:59563600-59570400	Weak transcription	Primary B cells from peripheral blood	blood
33	chr11:59563600-59573000	Weak transcription	Esophagus	oesophagus
34	chr11:59563600-59573600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
35	chr11:59563800-59571200	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
36	chr11:59563800-59571600	Weak transcription	Brain Cingulate Gyrus	brain
37	chr11:59563800-59573000	Weak transcription	HepG2	liver
38	chr11:59563800-59573800	Weak transcription	Gastric	stomach
39	chr11:59564000-59571200	Weak transcription	Primary hematopoietic stem cells	blood
40	chr11:59564000-59571400	Weak transcription	NHLF	lung
41	chr11:59564200-59573000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
42	chr11:59564400-59571200	Weak transcription	Fetal Brain Female	brain
43	chr11:59564400-59571400	Weak transcription	Fetal Stomach	stomach
44	chr11:59565200-59570400	Weak transcription	Primary T cells from cord blood	blood
45	chr11:59565200-59573000	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
46	chr11:59565400-59570800	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
47	chr11:59565400-59571400	Weak transcription	Rectal Smooth Muscle	rectum
48	chr11:59565400-59573200	Weak transcription	Right Ventricle	heart
49	chr11:59565400-59573600	Weak transcription	Pancreas	Pancrea
50	chr11:59565600-59573200	Weak transcription	NHDF-Ad	bronchial

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