Variant report

Variant	rs1287449
Chromosome Location	chr11:59357078-59357079
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr11:59313138..59315847-chr11:59354550..59357192,2	K562	blood:

Extended variants
information (count: 88 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:88)

rs_ID	r²[population]
rs1121991	0.83[ASN][1000 genomes]
rs11230019	0.81[EUR][1000 genomes]
rs11230020	0.82[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs11230027	0.80[ASN][1000 genomes]
rs11230037	0.83[ASN][1000 genomes]
rs11821465	0.83[ASN][1000 genomes]
rs12271110	0.81[EUR][1000 genomes]
rs12271188	0.82[AMR][1000 genomes];0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12272588	0.83[ASN][1000 genomes]
rs12272999	0.81[EUR][1000 genomes]
rs12276505	0.86[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12278859	0.83[ASN][1000 genomes]
rs12278910	0.84[AMR][1000 genomes];0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12280606	0.83[ASN][1000 genomes]
rs12281969	0.84[AMR][1000 genomes];0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12285828	0.83[ASN][1000 genomes]
rs12287975	0.83[ASN][1000 genomes]
rs12289162	0.83[ASN][1000 genomes]
rs12289921	0.82[AMR][1000 genomes];0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12292682	0.83[ASN][1000 genomes]
rs12797334	0.80[AMR][1000 genomes];0.83[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs1287441	0.80[AMR][1000 genomes];0.83[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs1287442	0.84[AMR][1000 genomes];0.82[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs1287446	0.82[AMR][1000 genomes];0.83[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs1287448	0.84[AMR][1000 genomes];0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1290466	0.85[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs1299800	0.84[AMR][1000 genomes];0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1530995	0.86[AMR][1000 genomes]
rs17153910	0.87[AMR][1000 genomes];0.83[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs17153962	0.86[AMR][1000 genomes]
rs17153966	0.86[AMR][1000 genomes]
rs17153982	0.86[AMR][1000 genomes]
rs17508845	0.81[EUR][1000 genomes]
rs17593682	0.81[EUR][1000 genomes]
rs1783212	0.80[AMR][1000 genomes];0.83[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs1938690	0.83[ASN][1000 genomes]
rs2298868	0.86[AMR][1000 genomes]
rs2298869	0.86[AMR][1000 genomes]
rs2924491	0.86[AMR][1000 genomes]
rs3015969	0.84[AMR][1000 genomes];0.83[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs3019740	0.87[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs34350918	0.86[ASN][1000 genomes]
rs35770960	0.82[AMR][1000 genomes]
rs4301803	0.83[ASN][1000 genomes]
rs473490	0.84[AMR][1000 genomes];0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs475800	0.84[EUR][1000 genomes]
rs486952	0.86[AMR][1000 genomes]
rs488331	0.82[AMR][1000 genomes];0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4939293	0.86[AMR][1000 genomes]
rs4939294	0.80[AMR][1000 genomes];0.83[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs495564	0.84[AMR][1000 genomes];0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs510249	0.81[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs518026	0.86[AMR][1000 genomes]
rs519535	0.86[AMR][1000 genomes]
rs519865	0.82[AMR][1000 genomes];0.83[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs519873	0.89[AMR][1000 genomes];0.83[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs532838	0.82[AMR][1000 genomes];0.83[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs536910	0.84[AMR][1000 genomes];0.83[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs540989	0.84[EUR][1000 genomes]
rs550822	0.84[AMR][1000 genomes];0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs553700	0.82[AMR][1000 genomes];0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs55667192	0.84[AMR][1000 genomes];0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs558505	0.86[AMR][1000 genomes]
rs559150	0.86[AMR][1000 genomes]
rs561604	0.87[AMR][1000 genomes];0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs563276	0.84[AMR][1000 genomes];0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs563683	0.86[AMR][1000 genomes]
rs565482	0.86[AMR][1000 genomes]
rs567994	0.82[AMR][1000 genomes];0.86[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs6591541	0.84[AMR][1000 genomes];0.83[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs693110	0.84[AMR][1000 genomes];0.83[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7116567	0.84[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs7124813	0.84[AMR][1000 genomes];0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7126593	0.83[ASN][1000 genomes]
rs7130130	0.81[EUR][1000 genomes]
rs73486934	0.84[AMR][1000 genomes];0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73486962	0.83[ASN][1000 genomes]
rs73486971	0.83[ASN][1000 genomes]
rs73486979	0.83[ASN][1000 genomes]
rs73486988	0.83[ASN][1000 genomes]
rs73486997	0.83[ASN][1000 genomes]
rs7924849	0.81[EUR][1000 genomes]
rs7939527	0.86[AMR][1000 genomes]
rs7948041	0.81[EUR][1000 genomes]
rs7952367	0.81[AMR][1000 genomes];0.83[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7952380	0.81[EUR][1000 genomes]
rs7952495	0.86[AMR][1000 genomes]
rs8280	0.84[AMR][1000 genomes];0.83[EUR][1000 genomes];0.93[ASN][1000 genomes]

No data

Chromatin state (count:125 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:59334200-59366200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
2	chr11:59334200-59382000	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
3	chr11:59340800-59378200	Strong transcription	Fetal Thymus	thymus
4	chr11:59342000-59379000	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
5	chr11:59342200-59358000	Strong transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
6	chr11:59342200-59378200	Strong transcription	Primary T helper 17 cells PMA-I stimulated	--
7	chr11:59343600-59378400	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
8	chr11:59343800-59382000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
9	chr11:59344000-59360400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
10	chr11:59346200-59360400	Weak transcription	Esophagus	oesophagus
11	chr11:59346200-59360400	Weak transcription	Right Ventricle	heart
12	chr11:59346200-59361000	Weak transcription	iPS-15b Cell Line	embryonic stem cell
13	chr11:59346600-59360400	Weak transcription	H9 Cell Line	embryonic stem cell
14	chr11:59347600-59359800	Weak transcription	Spleen	Spleen
15	chr11:59349000-59357600	Weak transcription	HUVEC	blood vessel
16	chr11:59349000-59359400	Weak transcription	Brain Angular Gyrus	brain
17	chr11:59350000-59360400	Weak transcription	Gastric	stomach
18	chr11:59350200-59360800	Weak transcription	Stomach Mucosa	stomach
19	chr11:59350200-59361000	Weak transcription	Psoas Muscle	Psoas
20	chr11:59350200-59378200	Strong transcription	IMR90 fetal lung fibroblasts Cell Line	lung
21	chr11:59350400-59360600	Weak transcription	NHLF	lung
22	chr11:59351400-59371400	Strong transcription	Primary T helper cells fromperipheralblood	blood
23	chr11:59351800-59369000	Strong transcription	Placenta	Placenta
24	chr11:59352000-59359600	Weak transcription	Brain Cingulate Gyrus	brain
25	chr11:59352000-59360400	Weak transcription	Pancreas	Pancrea
26	chr11:59352200-59357400	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
27	chr11:59352200-59357600	Weak transcription	Fetal Brain Male	brain
28	chr11:59352200-59371200	Strong transcription	Primary T cells fromperipheralblood	blood
29	chr11:59352400-59358000	Weak transcription	HSMMtube	muscle
30	chr11:59352400-59359400	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
31	chr11:59352400-59359400	Weak transcription	Brain Inferior Temporal Lobe	brain
32	chr11:59352400-59359400	Weak transcription	Colon Smooth Muscle	Colon
33	chr11:59352400-59360600	Weak transcription	Fetal Heart	heart
34	chr11:59352400-59369200	Strong transcription	Primary neutrophils fromperipheralblood	blood
35	chr11:59352400-59378000	Strong transcription	Sigmoid Colon	Sigmoid Colon
36	chr11:59352600-59357800	Weak transcription	Skeletal Muscle Male	skeletal muscle
37	chr11:59352600-59359400	Weak transcription	Pancreatic Islets	Pancreatic Islet
38	chr11:59352600-59378200	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
39	chr11:59352800-59378400	Strong transcription	Primary monocytes fromperipheralblood	blood
40	chr11:59353000-59358200	Strong transcription	Cortex derived primary cultured neurospheres	brain
41	chr11:59353000-59368600	Strong transcription	Liver	Liver
42	chr11:59353000-59371200	Strong transcription	Left Ventricle	heart
43	chr11:59353200-59377800	Strong transcription	Fetal Muscle Trunk	muscle
44	chr11:59353200-59378200	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
45	chr11:59353200-59378400	Strong transcription	Primary hematopoietic stem cells short term culture	blood
46	chr11:59353400-59378000	Strong transcription	Fetal Intestine Large	intestine
47	chr11:59353400-59378200	Strong transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
48	chr11:59353400-59378200	Strong transcription	Breast Myoepithelial Primary Cells	Breast
49	chr11:59353400-59378800	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
50	chr11:59353600-59359200	Weak transcription	Colonic Mucosa	Colon

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