Variant report

Variant	rs550822
Chromosome Location	chr11:59354680-59354681
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr11:59354189..59356140-chr11:59358099..59360988,3	K562	blood:
2	chr11:59353932..59356058-chr11:59357953..59360980,3	K562	blood:
3	chr11:59313138..59315847-chr11:59354550..59357192,2	K562	blood:

Extended variants
information (count: 160 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:160)

rs_ID	r²[population]
rs10501380	1.00[JPT][hapmap]
rs1121991	0.88[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs11230020	0.82[CEU][hapmap];1.00[JPT][hapmap];0.82[YRI][hapmap];0.88[AFR][1000 genomes];0.98[AMR][1000 genomes];0.92[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs11230027	0.88[AFR][1000 genomes];0.84[AMR][1000 genomes];0.92[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs11230037	0.82[CEU][hapmap];1.00[JPT][hapmap];0.90[YRI][hapmap];0.92[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs1151063	0.82[CEU][hapmap];1.00[JPT][hapmap];0.80[EUR][1000 genomes]
rs1151064	0.82[CEU][hapmap];1.00[JPT][hapmap];0.80[EUR][1000 genomes]
rs11821333	0.84[EUR][1000 genomes]
rs11821465	0.82[CEU][hapmap];1.00[JPT][hapmap];0.82[YRI][hapmap];0.92[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs12271188	0.89[AFR][1000 genomes];0.98[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12272588	0.88[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs12276505	0.94[AMR][1000 genomes];0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12278859	0.92[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs12278910	0.82[CEU][hapmap];1.00[JPT][hapmap];0.95[YRI][hapmap];0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12280606	0.82[CEU][hapmap];0.90[YRI][hapmap];0.92[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs12281969	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12285828	0.86[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs12287975	0.88[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs12289162	0.92[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs12289921	0.82[CEU][hapmap];0.81[YRI][hapmap];0.80[AFR][1000 genomes];0.98[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12292682	0.85[CEU][hapmap];1.00[JPT][hapmap];0.95[YRI][hapmap];0.88[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs12797334	1.00[JPT][hapmap];0.87[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs1287111	0.82[CEU][hapmap];1.00[JPT][hapmap];0.80[EUR][1000 genomes]
rs1287441	0.94[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs1287442	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs1287446	0.82[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs1287448	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1287449	0.84[AMR][1000 genomes];0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1290457	0.84[EUR][1000 genomes]
rs1290459	0.84[EUR][1000 genomes]
rs1290466	0.94[AMR][1000 genomes];0.90[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs1299800	0.85[CEU][hapmap];1.00[JPT][hapmap];0.95[YRI][hapmap];0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17046	0.84[EUR][1000 genomes]
rs17153910	0.82[CEU][hapmap];1.00[JPT][hapmap];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs17154029	0.84[EUR][1000 genomes]
rs17154134	0.82[CEU][hapmap];1.00[JPT][hapmap];0.80[EUR][1000 genomes]
rs17154138	0.80[EUR][1000 genomes]
rs17154146	0.82[CEU][hapmap];1.00[JPT][hapmap];0.80[EUR][1000 genomes]
rs17154149	0.80[EUR][1000 genomes]
rs17154157	1.00[JPT][hapmap];0.80[EUR][1000 genomes]
rs17154165	0.82[CEU][hapmap];1.00[JPT][hapmap];0.80[EUR][1000 genomes]
rs17154169	0.80[EUR][1000 genomes]
rs17154175	0.80[EUR][1000 genomes]
rs17154180	0.80[EUR][1000 genomes]
rs17154195	0.80[EUR][1000 genomes]
rs17154200	0.80[EUR][1000 genomes]
rs1783212	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs1938690	0.82[CEU][hapmap];1.00[JPT][hapmap];0.95[YRI][hapmap];0.92[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs2186597	0.82[AFR][1000 genomes];0.88[EUR][1000 genomes]
rs2508335	1.00[JPT][hapmap]
rs2509274	0.82[CEU][hapmap];1.00[JPT][hapmap];0.80[EUR][1000 genomes]
rs2509275	0.82[CEU][hapmap];1.00[JPT][hapmap]
rs2509276	0.80[EUR][1000 genomes]
rs2509279	1.00[JPT][hapmap]
rs2509290	0.85[CEU][hapmap];1.00[JPT][hapmap];0.84[EUR][1000 genomes]
rs2509730	0.80[EUR][1000 genomes]
rs2927183	0.84[EUR][1000 genomes]
rs3015969	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs3019740	0.96[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3110322	0.84[EUR][1000 genomes]
rs3132748	0.84[EUR][1000 genomes]
rs34350918	0.92[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs3781792	0.80[EUR][1000 genomes]
rs3781793	0.80[EUR][1000 genomes]
rs3862660	0.80[EUR][1000 genomes]
rs41384548	0.82[CEU][hapmap];1.00[JPT][hapmap];0.80[EUR][1000 genomes]
rs4301803	0.88[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs4393334	0.85[CEU][hapmap];1.00[JPT][hapmap];0.95[YRI][hapmap];0.88[EUR][1000 genomes]
rs4515985	0.88[EUR][1000 genomes]
rs472177	0.82[CEU][hapmap];1.00[JPT][hapmap];0.95[YRI][hapmap];0.84[EUR][1000 genomes]
rs473087	0.84[EUR][1000 genomes]
rs473490	0.82[CEU][hapmap];1.00[JPT][hapmap];0.95[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs474844	0.84[EUR][1000 genomes]
rs475706	0.84[EUR][1000 genomes]
rs478167	0.82[CEU][hapmap];1.00[JPT][hapmap];0.80[EUR][1000 genomes]
rs482355	0.82[CEU][hapmap];1.00[JPT][hapmap];0.80[EUR][1000 genomes]
rs482356	0.80[EUR][1000 genomes]
rs485008	0.80[EUR][1000 genomes]
rs485803	1.00[JPT][hapmap]
rs486587	0.80[EUR][1000 genomes]
rs488331	0.82[CEU][hapmap];1.00[JPT][hapmap];0.82[YRI][hapmap];0.91[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs492652	0.84[EUR][1000 genomes]
rs4939294	0.84[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs495564	0.82[CEU][hapmap];1.00[JPT][hapmap];0.95[YRI][hapmap];0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs498099	1.00[JPT][hapmap]
rs498388	0.84[EUR][1000 genomes]
rs504016	0.85[CEU][hapmap];1.00[JPT][hapmap];0.80[EUR][1000 genomes]
rs507235	0.80[EUR][1000 genomes]
rs510122	0.80[EUR][1000 genomes]
rs510249	0.93[AFR][1000 genomes];0.98[AMR][1000 genomes];0.94[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs511785	0.80[EUR][1000 genomes]
rs511957	0.84[EUR][1000 genomes]
rs512194	0.82[CEU][hapmap];1.00[JPT][hapmap]
rs512695	0.80[EUR][1000 genomes]
rs513979	1.00[JPT][hapmap]
rs516912	0.82[CEU][hapmap];1.00[JPT][hapmap];0.80[EUR][1000 genomes]
rs519605	0.82[CEU][hapmap];1.00[JPT][hapmap];0.80[EUR][1000 genomes]
rs519865	0.87[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs519873	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs521330	0.80[EUR][1000 genomes]
rs523016	0.82[CEU][hapmap];1.00[JPT][hapmap];0.80[EUR][1000 genomes]
rs524102	1.00[JPT][hapmap]
rs528525	0.85[CEU][hapmap];1.00[JPT][hapmap];0.80[EUR][1000 genomes]
rs529270	0.82[CEU][hapmap];1.00[JPT][hapmap];0.80[EUR][1000 genomes]
rs532838	0.90[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs533166	1.00[JPT][hapmap]
rs536544	1.00[JPT][hapmap]
rs536910	0.95[YRI][hapmap];0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs537625	0.84[EUR][1000 genomes]
rs540684	0.82[CEU][hapmap];1.00[JPT][hapmap];0.84[EUR][1000 genomes]
rs549086	1.00[JPT][hapmap]
rs550189	0.84[EUR][1000 genomes]
rs552601	0.82[CEU][hapmap];1.00[JPT][hapmap];0.84[EUR][1000 genomes]
rs553700	0.85[CEU][hapmap];1.00[JPT][hapmap];0.90[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs554149	0.84[EUR][1000 genomes]
rs554848	0.82[CEU][hapmap];1.00[JPT][hapmap];0.80[EUR][1000 genomes]
rs555175	0.80[EUR][1000 genomes]
rs55667192	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs561604	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs563276	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs565482	1.00[CHB][hapmap]
rs565983	0.80[EUR][1000 genomes]
rs567485	0.80[EUR][1000 genomes]
rs567994	0.82[CEU][hapmap];1.00[JPT][hapmap];0.82[YRI][hapmap];0.83[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs569326	0.80[EUR][1000 genomes]
rs573592	0.82[CEU][hapmap];1.00[JPT][hapmap];0.80[EUR][1000 genomes]
rs57529518	0.80[EUR][1000 genomes]
rs57871852	0.80[EUR][1000 genomes]
rs579192	0.84[EUR][1000 genomes]
rs579362	0.85[CEU][hapmap];1.00[JPT][hapmap];0.95[YRI][hapmap]
rs579373	0.82[CEU][hapmap];1.00[JPT][hapmap];0.80[EUR][1000 genomes]
rs580242	0.84[EUR][1000 genomes]
rs58169611	0.80[EUR][1000 genomes]
rs58775794	0.80[EUR][1000 genomes]
rs60009036	0.80[EUR][1000 genomes]
rs60094706	0.80[EUR][1000 genomes]
rs61636608	0.80[EUR][1000 genomes]
rs6591540	0.85[EUR][1000 genomes]
rs6591541	0.82[CEU][hapmap];1.00[JPT][hapmap];0.95[YRI][hapmap];0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs693110	0.85[CEU][hapmap];1.00[JPT][hapmap];0.93[YRI][hapmap];0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7114773	0.80[EUR][1000 genomes]
rs7116567	0.85[CEU][hapmap];1.00[JPT][hapmap];0.95[YRI][hapmap];0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7118051	0.85[CEU][hapmap]
rs7119778	0.85[CEU][hapmap];1.00[JPT][hapmap];0.80[EUR][1000 genomes]
rs7124813	0.85[CEU][hapmap];1.00[JPT][hapmap];0.95[YRI][hapmap];0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7126593	0.85[CEU][hapmap];1.00[JPT][hapmap];0.95[YRI][hapmap];0.88[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs7131059	0.80[EUR][1000 genomes]
rs73486934	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73486962	0.92[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs73486971	0.92[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs73486979	0.92[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs73486988	0.88[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs73486997	0.88[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs7941643	0.84[EUR][1000 genomes]
rs7946152	0.80[EUR][1000 genomes]
rs7947036	1.00[JPT][hapmap];0.80[EUR][1000 genomes]
rs7947514	0.82[CEU][hapmap];1.00[JPT][hapmap];0.80[EUR][1000 genomes]
rs7952024	0.82[CEU][hapmap];1.00[JPT][hapmap];0.80[EUR][1000 genomes]
rs7952367	0.93[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs8280	0.82[CEU][hapmap];1.00[JPT][hapmap];0.95[YRI][hapmap];0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]

No data

Chromatin state (count:125 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:59334200-59366200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
2	chr11:59334200-59382000	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
3	chr11:59340800-59378200	Strong transcription	Fetal Thymus	thymus
4	chr11:59342000-59379000	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
5	chr11:59342200-59358000	Strong transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
6	chr11:59342200-59378200	Strong transcription	Primary T helper 17 cells PMA-I stimulated	--
7	chr11:59343600-59378400	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
8	chr11:59343800-59382000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
9	chr11:59344000-59360400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
10	chr11:59346200-59360400	Weak transcription	Esophagus	oesophagus
11	chr11:59346200-59360400	Weak transcription	Right Ventricle	heart
12	chr11:59346200-59361000	Weak transcription	iPS-15b Cell Line	embryonic stem cell
13	chr11:59346600-59360400	Weak transcription	H9 Cell Line	embryonic stem cell
14	chr11:59347600-59359800	Weak transcription	Spleen	Spleen
15	chr11:59348200-59355000	Weak transcription	Brain Substantia Nigra	brain
16	chr11:59349000-59357600	Weak transcription	HUVEC	blood vessel
17	chr11:59349000-59359400	Weak transcription	Brain Angular Gyrus	brain
18	chr11:59350000-59360400	Weak transcription	Gastric	stomach
19	chr11:59350200-59355800	Weak transcription	Aorta	Aorta
20	chr11:59350200-59360800	Weak transcription	Stomach Mucosa	stomach
21	chr11:59350200-59361000	Weak transcription	Psoas Muscle	Psoas
22	chr11:59350200-59378200	Strong transcription	IMR90 fetal lung fibroblasts Cell Line	lung
23	chr11:59350400-59360600	Weak transcription	NHLF	lung
24	chr11:59351200-59354800	Strong transcription	Lung	lung
25	chr11:59351400-59371400	Strong transcription	Primary T helper cells fromperipheralblood	blood
26	chr11:59351600-59357000	Strong transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
27	chr11:59351800-59369000	Strong transcription	Placenta	Placenta
28	chr11:59352000-59359600	Weak transcription	Brain Cingulate Gyrus	brain
29	chr11:59352000-59360400	Weak transcription	Pancreas	Pancrea
30	chr11:59352200-59357400	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
31	chr11:59352200-59357600	Weak transcription	Fetal Brain Male	brain
32	chr11:59352200-59371200	Strong transcription	Primary T cells fromperipheralblood	blood
33	chr11:59352400-59354800	Weak transcription	Brain Anterior Caudate	brain
34	chr11:59352400-59354800	Weak transcription	Placenta Amnion	Placenta Amnion
35	chr11:59352400-59354800	Weak transcription	Rectal Mucosa Donor 29	rectum
36	chr11:59352400-59355000	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
37	chr11:59352400-59355400	Weak transcription	HepG2	liver
38	chr11:59352400-59356400	Strong transcription	Primary B cells from peripheral blood	blood
39	chr11:59352400-59358000	Weak transcription	HSMMtube	muscle
40	chr11:59352400-59359400	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
41	chr11:59352400-59359400	Weak transcription	Brain Inferior Temporal Lobe	brain
42	chr11:59352400-59359400	Weak transcription	Colon Smooth Muscle	Colon
43	chr11:59352400-59360600	Weak transcription	Fetal Heart	heart
44	chr11:59352400-59369200	Strong transcription	Primary neutrophils fromperipheralblood	blood
45	chr11:59352400-59378000	Strong transcription	Sigmoid Colon	Sigmoid Colon
46	chr11:59352600-59355000	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
47	chr11:59352600-59355000	Weak transcription	Duodenum Smooth Muscle	Duodenum
48	chr11:59352600-59357000	Strong transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
49	chr11:59352600-59357800	Weak transcription	Skeletal Muscle Male	skeletal muscle
50	chr11:59352600-59359400	Weak transcription	Pancreatic Islets	Pancreatic Islet

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links