Variant report

Variant	rs34350918
Chromosome Location	chr11:59410213-59410214
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr11:59409381..59412375-chr11:59418263..59422142,3	K562	blood:

Extended variants
information (count: 161 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:157)

rs_ID	r²[population]
rs1121991	0.92[AFR][1000 genomes];0.98[AMR][1000 genomes];0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs11230020	0.92[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs11230027	0.83[AFR][1000 genomes];0.92[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs11230037	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1151063	0.88[EUR][1000 genomes]
rs1151064	0.88[EUR][1000 genomes]
rs11821333	0.81[AFR][1000 genomes];0.92[EUR][1000 genomes]
rs11821465	0.88[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs12271188	0.88[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs12272588	0.92[AFR][1000 genomes];0.98[AMR][1000 genomes];0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs12276505	0.86[ASN][1000 genomes]
rs12278859	0.88[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs12278910	0.92[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs12280606	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs12281969	0.88[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs12285828	0.92[AFR][1000 genomes];0.98[AMR][1000 genomes];0.94[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs12287975	0.92[AMR][1000 genomes];0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs12289162	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs12289921	0.88[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs12292682	0.92[AFR][1000 genomes];0.98[AMR][1000 genomes];0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs12797334	0.92[EUR][1000 genomes]
rs1287111	0.88[EUR][1000 genomes]
rs1287441	0.92[EUR][1000 genomes]
rs1287442	0.90[EUR][1000 genomes]
rs1287446	0.92[EUR][1000 genomes]
rs1287448	0.92[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs1287449	0.86[ASN][1000 genomes]
rs1290457	0.92[EUR][1000 genomes]
rs1290459	0.81[AFR][1000 genomes];0.92[EUR][1000 genomes]
rs1290466	0.81[EUR][1000 genomes]
rs1299800	0.92[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs17046	0.92[EUR][1000 genomes]
rs17153910	0.92[EUR][1000 genomes]
rs17154029	0.92[EUR][1000 genomes]
rs17154134	0.88[EUR][1000 genomes]
rs17154138	0.88[EUR][1000 genomes]
rs17154146	0.88[EUR][1000 genomes]
rs17154149	0.88[EUR][1000 genomes]
rs17154157	0.88[EUR][1000 genomes]
rs17154165	0.88[EUR][1000 genomes]
rs17154169	0.88[EUR][1000 genomes]
rs17154175	0.88[EUR][1000 genomes]
rs17154180	0.88[EUR][1000 genomes]
rs17154195	0.88[EUR][1000 genomes]
rs17154200	0.88[EUR][1000 genomes]
rs17154222	0.88[EUR][1000 genomes]
rs17154227	0.86[EUR][1000 genomes]
rs1783212	0.92[EUR][1000 genomes]
rs1938690	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2186597	0.90[AFR][1000 genomes];0.98[AMR][1000 genomes];0.96[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs2509274	0.88[EUR][1000 genomes]
rs2509275	0.86[EUR][1000 genomes]
rs2509276	0.88[EUR][1000 genomes]
rs2509290	0.92[EUR][1000 genomes]
rs2509730	0.88[EUR][1000 genomes]
rs2927183	0.92[EUR][1000 genomes]
rs2957223	0.84[EUR][1000 genomes]
rs3015969	0.92[EUR][1000 genomes]
rs3019740	0.88[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs3110322	0.92[EUR][1000 genomes]
rs3132748	0.92[EUR][1000 genomes]
rs3781792	0.88[EUR][1000 genomes]
rs3781793	0.88[EUR][1000 genomes]
rs3862660	0.88[EUR][1000 genomes]
rs41384548	0.88[EUR][1000 genomes]
rs4301803	0.92[AFR][1000 genomes];0.98[AMR][1000 genomes];0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs4356243	0.86[EUR][1000 genomes]
rs4393334	0.92[AFR][1000 genomes];0.98[AMR][1000 genomes];0.96[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs4515985	0.85[AFR][1000 genomes];0.98[AMR][1000 genomes];0.96[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs472177	0.83[AFR][1000 genomes];0.92[EUR][1000 genomes]
rs473087	0.92[EUR][1000 genomes]
rs473490	0.92[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs474844	0.81[AFR][1000 genomes];0.92[EUR][1000 genomes]
rs475706	0.92[EUR][1000 genomes]
rs478167	0.88[EUR][1000 genomes]
rs482355	0.88[EUR][1000 genomes]
rs482356	0.88[EUR][1000 genomes]
rs484895	0.88[EUR][1000 genomes]
rs485008	0.88[EUR][1000 genomes]
rs486587	0.88[EUR][1000 genomes]
rs488331	0.92[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs492652	0.92[EUR][1000 genomes]
rs4939294	0.92[EUR][1000 genomes]
rs495564	0.92[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs498388	0.92[EUR][1000 genomes]
rs504016	0.88[EUR][1000 genomes]
rs507235	0.88[EUR][1000 genomes]
rs510122	0.88[EUR][1000 genomes]
rs510249	0.86[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs511785	0.88[EUR][1000 genomes]
rs511957	0.92[EUR][1000 genomes]
rs512194	0.80[EUR][1000 genomes]
rs512695	0.88[EUR][1000 genomes]
rs516912	0.88[EUR][1000 genomes]
rs519605	0.88[EUR][1000 genomes]
rs519865	0.92[EUR][1000 genomes]
rs519873	0.92[EUR][1000 genomes]
rs521330	0.88[EUR][1000 genomes]
rs523016	0.88[EUR][1000 genomes]
rs528525	0.88[EUR][1000 genomes]
rs529270	0.88[EUR][1000 genomes]
rs532838	0.92[EUR][1000 genomes]
rs536910	0.92[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs537625	0.92[EUR][1000 genomes]
rs540684	0.92[EUR][1000 genomes]
rs550189	0.92[EUR][1000 genomes]
rs550822	0.92[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs552601	0.92[EUR][1000 genomes]
rs553700	0.92[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs554149	0.92[EUR][1000 genomes]
rs554848	0.88[EUR][1000 genomes]
rs555175	0.88[EUR][1000 genomes]
rs55667192	0.92[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs561604	0.92[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs563276	0.92[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs565983	0.88[EUR][1000 genomes]
rs567485	0.88[EUR][1000 genomes]
rs567603	0.88[EUR][1000 genomes]
rs567994	0.90[EUR][1000 genomes]
rs569326	0.88[EUR][1000 genomes]
rs573592	0.88[EUR][1000 genomes]
rs57529518	0.88[EUR][1000 genomes]
rs57871852	0.88[EUR][1000 genomes]
rs579192	0.92[EUR][1000 genomes]
rs579373	0.88[EUR][1000 genomes]
rs580242	0.92[EUR][1000 genomes]
rs58169611	0.88[EUR][1000 genomes]
rs58775794	0.88[EUR][1000 genomes]
rs60009036	0.88[EUR][1000 genomes]
rs60094706	0.88[EUR][1000 genomes]
rs61636608	0.88[EUR][1000 genomes]
rs6591540	0.81[EUR][1000 genomes]
rs6591541	0.92[EUR][1000 genomes]
rs693110	0.92[EUR][1000 genomes]
rs7108731	0.81[EUR][1000 genomes]
rs7114773	0.88[EUR][1000 genomes]
rs7116567	0.88[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs7119778	0.88[EUR][1000 genomes]
rs7123969	0.86[EUR][1000 genomes]
rs7124813	0.88[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs7126593	0.90[AFR][1000 genomes];0.98[AMR][1000 genomes];0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7131059	0.88[EUR][1000 genomes]
rs73486934	0.88[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs73486962	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs73486971	0.95[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs73486979	0.92[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs73486988	0.92[AFR][1000 genomes];0.98[AMR][1000 genomes];0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs73486997	0.92[AFR][1000 genomes];0.98[AMR][1000 genomes];0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs73488804	0.88[AMR][1000 genomes]
rs7933970	0.86[EUR][1000 genomes]
rs7941643	0.81[AFR][1000 genomes];0.92[EUR][1000 genomes]
rs7946152	0.88[EUR][1000 genomes]
rs7947036	0.88[EUR][1000 genomes]
rs7947514	0.88[EUR][1000 genomes]
rs7952024	0.88[EUR][1000 genomes]
rs7952367	0.92[EUR][1000 genomes]
rs8280	0.92[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv1797571	chr11:59383323-59424688	Strong transcription Flanking Active TSS Weak transcription Active TSS Genic enhancers Enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	11 gene(s)	inside rSNPs	diseases
2	esv1797737	chr11:59383323-59424688	Weak transcription Enhancers Strong transcription Active TSS Flanking Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	11 gene(s)	inside rSNPs	diseases
3	esv1802782	chr11:59383323-59448068	Genic enhancers Flanking Active TSS Weak transcription Enhancers Strong transcription Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	30 gene(s)	inside rSNPs	diseases
4	nsv832172	chr11:59396407-59431115	Genic enhancers Strong transcription Weak transcription Enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:126 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:59395600-59434600	Weak transcription	Stomach Mucosa	stomach
2	chr11:59402200-59411800	Strong transcription	Foreskin Melanocyte Primary Cells skin03	Skin
3	chr11:59402200-59427000	Strong transcription	Monocytes-CD14+_RO01746	blood
4	chr11:59402200-59432400	Strong transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
5	chr11:59402200-59434000	Strong transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
6	chr11:59402400-59427800	Strong transcription	Muscle Satellite Cultured Cells	--
7	chr11:59402400-59428200	Strong transcription	Primary T cells from cord blood	blood
8	chr11:59402600-59410600	Strong transcription	Skeletal Muscle Male	skeletal muscle
9	chr11:59402600-59410800	Strong transcription	Primary T helper 17 cells PMA-I stimulated	--
10	chr11:59402600-59410800	Strong transcription	Liver	Liver
11	chr11:59402600-59411200	Strong transcription	Fetal Stomach	stomach
12	chr11:59402600-59411200	Strong transcription	Spleen	Spleen
13	chr11:59402600-59424200	Strong transcription	Primary mononuclear cells fromperipheralblood	Blood
14	chr11:59402600-59426800	Strong transcription	Primary neutrophils fromperipheralblood	blood
15	chr11:59402600-59427200	Strong transcription	Primary hematopoietic stem cells	blood
16	chr11:59402600-59427400	Strong transcription	Primary hematopoietic stem cells short term culture	blood
17	chr11:59402600-59427600	Strong transcription	Adipose Nuclei	Adipose
18	chr11:59402600-59427600	Strong transcription	GM12878-XiMat	blood
19	chr11:59402600-59428000	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
20	chr11:59402600-59428000	Strong transcription	Rectal Mucosa Donor 31	rectum
21	chr11:59402600-59428400	Strong transcription	Primary T cells fromperipheralblood	blood
22	chr11:59402600-59428400	Strong transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
23	chr11:59402600-59428600	Strong transcription	Fetal Muscle Leg	muscle
24	chr11:59402600-59429000	Strong transcription	Sigmoid Colon	Sigmoid Colon
25	chr11:59402600-59434000	Strong transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
26	chr11:59402600-59434000	Strong transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
27	chr11:59402600-59434200	Strong transcription	Fetal Muscle Trunk	muscle
28	chr11:59402600-59434400	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
29	chr11:59402800-59410600	Strong transcription	Foreskin Fibroblast Primary Cells skin02	Skin
30	chr11:59402800-59410800	Strong transcription	Stomach Smooth Muscle	stomach
31	chr11:59402800-59411200	Strong transcription	Fetal Intestine Small	intestine
32	chr11:59402800-59411200	Strong transcription	Lung	lung
33	chr11:59402800-59411400	Strong transcription	Skeletal Muscle Female	skeletal muscle
34	chr11:59402800-59413200	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
35	chr11:59402800-59426600	Strong transcription	Primary B cells from peripheral blood	blood
36	chr11:59402800-59427000	Strong transcription	Ovary	ovary
37	chr11:59402800-59427200	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
38	chr11:59402800-59427200	Strong transcription	HUVEC	blood vessel
39	chr11:59402800-59428000	Strong transcription	Breast Myoepithelial Primary Cells	Breast
40	chr11:59402800-59428000	Strong transcription	Primary T helper cells PMA-I stimulated	--
41	chr11:59402800-59428000	Strong transcription	Primary T helper cells fromperipheralblood	blood
42	chr11:59402800-59428000	Strong transcription	Placenta	Placenta
43	chr11:59402800-59428400	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
44	chr11:59402800-59428600	Strong transcription	Primary T regulatory cells fromperipheralblood	blood
45	chr11:59402800-59428800	Strong transcription	Thymus	Thymus
46	chr11:59402800-59429800	Strong transcription	Dnd41	blood
47	chr11:59402800-59431600	Strong transcription	Fetal Intestine Large	intestine
48	chr11:59402800-59434200	Strong transcription	Duodenum Mucosa	Duodenum
49	chr11:59402800-59434200	Strong transcription	Fetal Thymus	thymus
50	chr11:59402800-59434400	Strong transcription	Foreskin Keratinocyte Primary Cells skin02	Skin

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