Variant report

Variant	rs17154029
Chromosome Location	chr11:59478919-59478920
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr11:59476148..59479085-chr11:59479730..59481553,2	K562	blood:

Variant related genes	Relation type
ENSG00000172289	Chromatin interaction
ENSG00000166900	Chromatin interaction

Extended variants
information (count: 195 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:194)

rs_ID	r²[population]
rs10501380	0.81[EUR][1000 genomes]
rs1121991	0.96[EUR][1000 genomes]
rs11230020	0.84[EUR][1000 genomes]
rs11230027	0.84[EUR][1000 genomes]
rs11230037	0.92[EUR][1000 genomes]
rs1151063	0.80[AMR][1000 genomes];0.96[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs1151064	0.84[AMR][1000 genomes];0.96[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs11820340	0.86[AMR][1000 genomes]
rs11821333	0.87[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11821465	0.83[AFR][1000 genomes];0.92[EUR][1000 genomes]
rs12270043	0.86[AMR][1000 genomes]
rs12271188	0.80[EUR][1000 genomes]
rs12272588	0.96[EUR][1000 genomes]
rs12276956	0.86[AMR][1000 genomes]
rs12278859	0.81[AFR][1000 genomes];0.92[EUR][1000 genomes]
rs12278910	0.84[EUR][1000 genomes]
rs12280606	0.92[EUR][1000 genomes]
rs12281969	0.80[EUR][1000 genomes]
rs12285828	0.94[EUR][1000 genomes]
rs12287975	0.88[EUR][1000 genomes]
rs12289162	0.92[EUR][1000 genomes]
rs12289921	0.80[EUR][1000 genomes]
rs12292682	0.96[EUR][1000 genomes]
rs12797334	0.84[EUR][1000 genomes]
rs1287111	0.80[AMR][1000 genomes];0.96[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs1287441	0.84[EUR][1000 genomes]
rs1287442	0.82[EUR][1000 genomes]
rs1287446	0.84[EUR][1000 genomes]
rs1287448	0.84[EUR][1000 genomes]
rs1290457	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs1290459	0.87[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1299800	0.84[EUR][1000 genomes]
rs17046	0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs17153910	0.84[EUR][1000 genomes]
rs17154134	0.96[EUR][1000 genomes]
rs17154138	0.96[EUR][1000 genomes]
rs17154146	0.96[EUR][1000 genomes]
rs17154149	0.96[EUR][1000 genomes]
rs17154157	0.96[EUR][1000 genomes]
rs17154165	0.96[EUR][1000 genomes]
rs17154169	0.96[EUR][1000 genomes]
rs17154175	0.96[EUR][1000 genomes]
rs17154180	0.96[EUR][1000 genomes]
rs17154195	0.96[EUR][1000 genomes]
rs17154200	0.96[EUR][1000 genomes]
rs17154222	0.96[EUR][1000 genomes]
rs17154227	0.94[EUR][1000 genomes]
rs1783212	0.84[EUR][1000 genomes]
rs1938690	0.92[EUR][1000 genomes]
rs2186597	0.96[EUR][1000 genomes]
rs2447310	0.84[AMR][1000 genomes];0.85[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs2508335	0.84[AMR][1000 genomes];0.85[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs2509274	0.84[AMR][1000 genomes];0.96[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs2509275	0.84[AMR][1000 genomes];0.94[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs2509276	0.88[AMR][1000 genomes];0.96[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs2509279	0.86[AMR][1000 genomes];0.85[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs2509290	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2509730	0.96[EUR][1000 genomes]
rs2927182	0.81[EUR][1000 genomes]
rs2927183	0.84[AMR][1000 genomes];1.00[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs2957223	0.82[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs3015969	0.84[EUR][1000 genomes]
rs3110322	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3132748	0.88[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34350918	0.92[EUR][1000 genomes]
rs3781792	0.96[EUR][1000 genomes]
rs3781793	0.96[EUR][1000 genomes]
rs3862660	0.96[EUR][1000 genomes]
rs41384548	0.96[EUR][1000 genomes]
rs4301803	0.96[EUR][1000 genomes]
rs4356243	0.94[EUR][1000 genomes]
rs4393334	0.96[EUR][1000 genomes]
rs4515985	0.96[EUR][1000 genomes]
rs471369	0.86[AMR][1000 genomes];0.85[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs472152	0.84[AMR][1000 genomes];0.85[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs472177	0.91[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs473087	0.86[AMR][1000 genomes];1.00[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs473490	0.84[EUR][1000 genomes]
rs474844	0.87[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs475706	0.86[AMR][1000 genomes];1.00[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs475800	0.81[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs477577	0.84[AMR][1000 genomes];0.85[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs477729	0.84[AMR][1000 genomes];0.85[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs478167	0.96[EUR][1000 genomes]
rs479264	0.84[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs481893	0.86[AMR][1000 genomes];0.85[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs482355	0.92[AMR][1000 genomes];0.96[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs482356	0.96[EUR][1000 genomes]
rs484030	0.81[EUR][1000 genomes]
rs484814	0.84[AMR][1000 genomes];0.81[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs484895	0.96[EUR][1000 genomes]
rs485008	0.92[AMR][1000 genomes];0.96[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs485803	0.84[AMR][1000 genomes];0.85[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs486587	0.84[AMR][1000 genomes];0.96[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs488331	0.84[EUR][1000 genomes]
rs492652	0.84[AMR][1000 genomes];1.00[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs4939294	0.84[EUR][1000 genomes]
rs494110	0.84[AMR][1000 genomes];0.85[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs495564	0.84[EUR][1000 genomes]
rs496492	0.86[AMR][1000 genomes]
rs496938	0.88[AMR][1000 genomes];0.85[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs497596	0.82[AMR][1000 genomes];0.81[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs498099	0.88[AMR][1000 genomes];0.85[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs498299	0.86[AMR][1000 genomes];0.85[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs498388	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs499054	0.86[AMR][1000 genomes];0.85[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs504016	0.80[AMR][1000 genomes];0.96[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs507235	0.84[AMR][1000 genomes];0.96[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs510122	0.84[AMR][1000 genomes];0.96[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs511785	0.84[AMR][1000 genomes];0.96[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs511957	0.86[AMR][1000 genomes];1.00[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs512194	0.88[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs512695	0.90[AMR][1000 genomes];0.96[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs513979	0.84[AMR][1000 genomes];0.85[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs516912	0.96[EUR][1000 genomes]
rs519605	0.84[AMR][1000 genomes];0.96[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs519865	0.84[EUR][1000 genomes]
rs519873	0.84[EUR][1000 genomes]
rs521330	0.92[AMR][1000 genomes];0.96[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs522957	0.86[AMR][1000 genomes]
rs523016	0.96[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs523932	0.86[AMR][1000 genomes]
rs524102	0.84[AMR][1000 genomes];0.85[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs526672	0.88[AMR][1000 genomes];0.85[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs528525	0.96[EUR][1000 genomes]
rs529270	0.84[AMR][1000 genomes];0.96[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs532838	0.84[EUR][1000 genomes]
rs533166	0.82[AMR][1000 genomes];0.81[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs536544	0.82[AMR][1000 genomes];0.81[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs536910	0.84[EUR][1000 genomes]
rs537625	0.84[AMR][1000 genomes];1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs538169	0.86[AMR][1000 genomes];0.85[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs540684	0.80[AFR][1000 genomes];0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs540989	0.80[AMR][1000 genomes];0.81[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs548163	0.86[AMR][1000 genomes]
rs549086	0.84[AMR][1000 genomes];0.81[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs550189	0.86[AMR][1000 genomes];1.00[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs550822	0.84[EUR][1000 genomes]
rs552601	0.86[AMR][1000 genomes];1.00[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs553700	0.84[EUR][1000 genomes]
rs554149	0.87[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs554848	0.96[EUR][1000 genomes]
rs555175	0.84[AMR][1000 genomes];0.96[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs55667192	0.84[EUR][1000 genomes]
rs561029	0.84[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs561604	0.84[EUR][1000 genomes]
rs562657	0.86[AMR][1000 genomes];0.85[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs563267	0.86[AMR][1000 genomes];0.85[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs563276	0.84[EUR][1000 genomes]
rs563800	0.84[AMR][1000 genomes];0.81[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs565983	0.96[EUR][1000 genomes]
rs567485	0.84[AMR][1000 genomes];0.96[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs567603	0.96[EUR][1000 genomes]
rs567994	0.82[EUR][1000 genomes]
rs569326	0.84[AMR][1000 genomes];0.96[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs573592	0.96[EUR][1000 genomes]
rs57529518	0.96[EUR][1000 genomes]
rs57871852	0.96[EUR][1000 genomes]
rs579192	0.80[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs579373	0.90[AMR][1000 genomes];0.96[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs580242	0.88[AMR][1000 genomes];1.00[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs581265	0.85[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs58169611	0.96[EUR][1000 genomes]
rs58775794	0.96[EUR][1000 genomes]
rs60009036	0.96[EUR][1000 genomes]
rs60094706	0.96[EUR][1000 genomes]
rs61636608	0.96[EUR][1000 genomes]
rs6591541	0.84[EUR][1000 genomes]
rs693110	0.84[EUR][1000 genomes]
rs7108731	0.85[EUR][1000 genomes]
rs7114773	0.96[EUR][1000 genomes]
rs7116567	0.80[EUR][1000 genomes]
rs7117509	0.81[EUR][1000 genomes]
rs7119778	0.96[EUR][1000 genomes]
rs7123969	0.94[EUR][1000 genomes]
rs7124813	0.80[EUR][1000 genomes]
rs7126593	0.96[EUR][1000 genomes]
rs7131059	0.96[EUR][1000 genomes]
rs73486934	0.80[EUR][1000 genomes]
rs73486962	0.92[EUR][1000 genomes]
rs73486971	0.92[EUR][1000 genomes]
rs73486979	0.92[EUR][1000 genomes]
rs73486988	0.96[EUR][1000 genomes]
rs73486997	0.96[EUR][1000 genomes]
rs73488834	0.86[AMR][1000 genomes]
rs7927187	0.86[AMR][1000 genomes]
rs7933970	0.94[EUR][1000 genomes]
rs7941643	0.87[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7946152	0.96[EUR][1000 genomes]
rs7947036	0.96[EUR][1000 genomes]
rs7947514	0.96[EUR][1000 genomes]
rs7952024	0.96[EUR][1000 genomes]
rs7952367	0.84[EUR][1000 genomes]
rs8280	0.84[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv517878	chr11:59441271-59480969	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:59475400-59483200	Weak transcription	K562	blood
2	chr11:59478000-59482200	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
3	chr11:59478200-59489600	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin

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