Variant report

Variant	rs11230037
Chromosome Location	chr11:59428851-59428852
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr11:59360123..59362224-chr11:59427629..59429741,2	K562	blood:
2	chr11:59427815..59429405-chr11:59434904..59436653,2	MCF-7	breast:
3	chr11:59426691..59428934-chr11:59429924..59431970,2	K562	blood:
4	chr11:59426718..59429219-chr11:59431171..59432816,2	MCF-7	breast:
5	chr11:59426478..59432385-chr11:59434040..59438268,6	K562	blood:
6	chr11:59427010..59429204-chr11:59432808..59435498,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000166889	Chromatin interaction
ENSG00000255355	Chromatin interaction

Extended variants
information (count: 205 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:203)

rs_ID	r²[population]
rs10501380	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[TSI][hapmap]
rs1121991	0.95[AFR][1000 genomes];0.98[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11230020	1.00[CEU][hapmap];1.00[CHB][hapmap];0.91[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.92[LWK][hapmap];1.00[MEX][hapmap];0.87[MKK][hapmap];1.00[TSI][hapmap];0.86[YRI][hapmap];0.92[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs11230027	0.92[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs1151063	1.00[CEU][hapmap];1.00[CHB][hapmap];0.91[CHD][hapmap];1.00[JPT][hapmap];0.90[MEX][hapmap];1.00[TSI][hapmap];0.88[EUR][1000 genomes]
rs1151064	1.00[CEU][hapmap];1.00[CHB][hapmap];0.91[CHD][hapmap];1.00[JPT][hapmap];0.90[MEX][hapmap];1.00[TSI][hapmap];0.88[EUR][1000 genomes]
rs11821333	0.81[AFR][1000 genomes];0.92[EUR][1000 genomes]
rs11821465	1.00[CEU][hapmap];1.00[CHB][hapmap];0.91[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.92[LWK][hapmap];1.00[MEX][hapmap];0.87[MKK][hapmap];1.00[TSI][hapmap];0.86[YRI][hapmap];0.91[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12271188	0.88[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs12272588	0.95[AFR][1000 genomes];0.98[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12276505	0.85[JPT][hapmap];0.83[ASN][1000 genomes]
rs12278859	0.91[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12278910	0.89[ASW][hapmap];1.00[CEU][hapmap];0.83[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.90[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];0.96[YRI][hapmap];0.92[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs12280606	0.89[ASW][hapmap];0.86[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];0.86[JPT][hapmap];1.00[LWK][hapmap];0.90[MEX][hapmap];1.00[MKK][hapmap];0.96[YRI][hapmap];0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs12281969	0.88[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs12285828	0.92[AFR][1000 genomes];0.98[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12287696	1.00[TSI][hapmap]
rs12287975	0.81[AFR][1000 genomes];0.92[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12289162	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs12289921	1.00[CEU][hapmap];0.83[CHD][hapmap];1.00[GIH][hapmap];0.85[JPT][hapmap];1.00[MEX][hapmap];0.83[MKK][hapmap];1.00[TSI][hapmap];0.88[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs12290453	1.00[TSI][hapmap]
rs12292682	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[YRI][hapmap];0.95[AFR][1000 genomes];0.98[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12797334	1.00[CEU][hapmap];1.00[JPT][hapmap];0.88[YRI][hapmap];0.92[EUR][1000 genomes]
rs1287111	1.00[CEU][hapmap];1.00[CHB][hapmap];0.91[CHD][hapmap];1.00[JPT][hapmap];0.90[MEX][hapmap];1.00[TSI][hapmap];0.88[EUR][1000 genomes]
rs1287441	0.92[EUR][1000 genomes]
rs1287442	0.90[EUR][1000 genomes]
rs1287446	0.92[EUR][1000 genomes]
rs1287448	0.92[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs1287449	0.83[ASN][1000 genomes]
rs1290457	0.92[EUR][1000 genomes]
rs1290459	0.81[AFR][1000 genomes];0.92[EUR][1000 genomes]
rs1290466	0.81[EUR][1000 genomes]
rs1299800	1.00[CEU][hapmap];1.00[JPT][hapmap];0.96[YRI][hapmap];0.92[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs1530995	0.90[MEX][hapmap]
rs17046	0.92[EUR][1000 genomes]
rs17153910	0.88[ASW][hapmap];1.00[CEU][hapmap];0.83[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.92[EUR][1000 genomes]
rs17153962	0.90[MEX][hapmap]
rs17154025	1.00[CHB][hapmap]
rs17154029	0.92[EUR][1000 genomes]
rs17154134	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[TSI][hapmap];0.88[EUR][1000 genomes]
rs17154138	0.88[EUR][1000 genomes]
rs17154142	1.00[CHB][hapmap]
rs17154146	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[TSI][hapmap];0.88[EUR][1000 genomes]
rs17154149	0.88[EUR][1000 genomes]
rs17154157	1.00[CEU][hapmap];1.00[JPT][hapmap];1.00[TSI][hapmap];0.88[EUR][1000 genomes]
rs17154165	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[TSI][hapmap];0.88[EUR][1000 genomes]
rs17154169	0.88[EUR][1000 genomes]
rs17154175	0.88[EUR][1000 genomes]
rs17154180	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[TSI][hapmap];0.88[EUR][1000 genomes]
rs17154195	0.88[EUR][1000 genomes]
rs17154200	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[TSI][hapmap];0.88[EUR][1000 genomes]
rs17154203	1.00[CHB][hapmap]
rs17154205	1.00[CHB][hapmap]
rs17154216	1.00[CHB][hapmap]
rs17154222	0.88[EUR][1000 genomes]
rs17154227	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[TSI][hapmap];0.86[EUR][1000 genomes]
rs17154234	1.00[CEU][hapmap];1.00[GIH][hapmap];1.00[TSI][hapmap]
rs17510841	1.00[TSI][hapmap]
rs17593682	1.00[TSI][hapmap]
rs17593836	1.00[TSI][hapmap]
rs17596359	1.00[TSI][hapmap]
rs17596862	1.00[CHB][hapmap];1.00[TSI][hapmap]
rs17597065	1.00[CHB][hapmap];1.00[TSI][hapmap]
rs17597092	1.00[TSI][hapmap]
rs1783212	0.92[EUR][1000 genomes]
rs1938690	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];0.91[CHD][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];0.96[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2186597	0.90[AFR][1000 genomes];0.98[AMR][1000 genomes];0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2508335	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs2509274	1.00[CEU][hapmap];1.00[CHB][hapmap];0.91[CHD][hapmap];1.00[JPT][hapmap];0.90[MEX][hapmap];1.00[TSI][hapmap];0.88[EUR][1000 genomes]
rs2509275	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[TSI][hapmap];0.86[EUR][1000 genomes]
rs2509276	0.88[EUR][1000 genomes]
rs2509279	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs2509290	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.86[YRI][hapmap];0.92[EUR][1000 genomes]
rs2509730	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.88[EUR][1000 genomes]
rs2927183	0.92[EUR][1000 genomes]
rs2927184	1.00[CHB][hapmap]
rs2957223	0.84[EUR][1000 genomes]
rs3015969	0.92[EUR][1000 genomes]
rs3019740	0.88[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs3110322	0.92[EUR][1000 genomes]
rs3132748	0.92[EUR][1000 genomes]
rs34350918	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs35211634	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[TSI][hapmap]
rs3781792	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.88[EUR][1000 genomes]
rs3781793	0.88[EUR][1000 genomes]
rs3862660	0.88[EUR][1000 genomes]
rs41340150	1.00[CHB][hapmap];0.90[MEX][hapmap]
rs41384548	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[TSI][hapmap];0.88[EUR][1000 genomes]
rs4301803	0.95[AFR][1000 genomes];0.98[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4356243	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.86[EUR][1000 genomes]
rs4393334	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[YRI][hapmap];0.92[AFR][1000 genomes];0.98[AMR][1000 genomes];0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs4515985	0.85[AFR][1000 genomes];0.98[AMR][1000 genomes];0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs472177	0.89[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];0.91[CHD][hapmap];1.00[JPT][hapmap];0.98[LWK][hapmap];1.00[MEX][hapmap];0.82[MKK][hapmap];1.00[TSI][hapmap];0.96[YRI][hapmap];0.83[AFR][1000 genomes];0.92[EUR][1000 genomes]
rs473087	0.92[EUR][1000 genomes]
rs473490	0.94[ASW][hapmap];1.00[CEU][hapmap];0.83[CHD][hapmap];1.00[JPT][hapmap];0.93[LWK][hapmap];0.99[MKK][hapmap];1.00[TSI][hapmap];0.96[YRI][hapmap];0.92[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs473979	1.00[CHB][hapmap]
rs474844	0.81[AFR][1000 genomes];0.92[EUR][1000 genomes]
rs475145	1.00[CHB][hapmap]
rs475706	0.92[EUR][1000 genomes]
rs478167	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.88[EUR][1000 genomes]
rs482355	1.00[CEU][hapmap];1.00[CHB][hapmap];0.90[CHD][hapmap];1.00[JPT][hapmap];0.90[MEX][hapmap];1.00[TSI][hapmap];0.88[EUR][1000 genomes]
rs482356	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[TSI][hapmap];0.88[EUR][1000 genomes]
rs484895	0.88[EUR][1000 genomes]
rs485008	0.88[EUR][1000 genomes]
rs485803	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs486587	0.88[EUR][1000 genomes]
rs486952	0.90[MEX][hapmap]
rs488331	1.00[CEU][hapmap];0.83[CHD][hapmap];1.00[JPT][hapmap];0.89[LWK][hapmap];0.91[MEX][hapmap];0.88[MKK][hapmap];1.00[TSI][hapmap];0.86[YRI][hapmap];0.92[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs492652	0.92[EUR][1000 genomes]
rs4939294	0.92[EUR][1000 genomes]
rs495564	0.89[ASW][hapmap];1.00[CEU][hapmap];0.83[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.96[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];0.96[YRI][hapmap];0.92[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs498099	1.00[CHB][hapmap];0.90[CHD][hapmap];1.00[JPT][hapmap];0.90[MEX][hapmap];1.00[TSI][hapmap]
rs498388	0.92[EUR][1000 genomes]
rs504016	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.88[EUR][1000 genomes]
rs506384	1.00[CHB][hapmap];0.90[MEX][hapmap]
rs507235	0.88[EUR][1000 genomes]
rs508411	1.00[CHB][hapmap]
rs510122	0.88[EUR][1000 genomes]
rs510249	0.86[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs511785	0.88[EUR][1000 genomes]
rs511957	0.92[EUR][1000 genomes]
rs512194	1.00[CEU][hapmap];1.00[CHB][hapmap];0.91[CHD][hapmap];1.00[JPT][hapmap];0.90[MEX][hapmap];1.00[TSI][hapmap];0.80[EUR][1000 genomes]
rs512695	0.88[EUR][1000 genomes]
rs513979	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs516912	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.88[EUR][1000 genomes]
rs519605	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.88[EUR][1000 genomes]
rs519865	0.92[EUR][1000 genomes]
rs519873	0.92[EUR][1000 genomes]
rs520622	1.00[CHB][hapmap]
rs521330	0.88[EUR][1000 genomes]
rs523016	1.00[CEU][hapmap];1.00[CHB][hapmap];0.91[CHD][hapmap];1.00[JPT][hapmap];0.90[MEX][hapmap];1.00[TSI][hapmap];0.88[EUR][1000 genomes]
rs524102	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs528525	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.88[EUR][1000 genomes]
rs529270	1.00[CEU][hapmap];1.00[CHB][hapmap];0.91[CHD][hapmap];1.00[JPT][hapmap];0.90[MEX][hapmap];1.00[TSI][hapmap];0.88[EUR][1000 genomes]
rs532838	0.92[EUR][1000 genomes]
rs533166	1.00[CHB][hapmap];0.91[CHD][hapmap];1.00[JPT][hapmap];0.90[MEX][hapmap];1.00[TSI][hapmap]
rs536544	1.00[CHB][hapmap];0.91[CHD][hapmap];1.00[JPT][hapmap];0.90[MEX][hapmap];1.00[TSI][hapmap]
rs536910	0.96[YRI][hapmap];0.92[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs537595	1.00[CHB][hapmap];0.90[MEX][hapmap]
rs537625	0.92[EUR][1000 genomes]
rs540684	1.00[CEU][hapmap];1.00[CHB][hapmap];0.91[CHD][hapmap];1.00[JPT][hapmap];0.85[LWK][hapmap];0.89[MEX][hapmap];1.00[TSI][hapmap];0.92[EUR][1000 genomes]
rs549086	1.00[CHB][hapmap];0.91[CHD][hapmap];1.00[JPT][hapmap];0.90[MEX][hapmap];1.00[TSI][hapmap]
rs550189	0.92[EUR][1000 genomes]
rs550822	0.82[CEU][hapmap];1.00[JPT][hapmap];0.90[YRI][hapmap];0.92[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs552601	1.00[CEU][hapmap];1.00[CHB][hapmap];0.91[CHD][hapmap];1.00[JPT][hapmap];0.90[MEX][hapmap];1.00[TSI][hapmap];0.92[EUR][1000 genomes]
rs553700	1.00[CEU][hapmap];1.00[JPT][hapmap];0.86[YRI][hapmap];0.92[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs554149	0.92[EUR][1000 genomes]
rs554848	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[TSI][hapmap];0.88[EUR][1000 genomes]
rs555175	0.88[EUR][1000 genomes]
rs555251	1.00[CHB][hapmap];0.90[MEX][hapmap]
rs55667192	0.92[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs559150	0.90[MEX][hapmap]
rs561604	0.92[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs563276	0.92[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs565983	0.88[EUR][1000 genomes]
rs567485	0.88[EUR][1000 genomes]
rs567603	1.00[CEU][hapmap];1.00[JPT][hapmap];0.88[EUR][1000 genomes]
rs567994	1.00[CEU][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.87[LWK][hapmap];1.00[MEX][hapmap];0.87[MKK][hapmap];0.86[YRI][hapmap];0.90[EUR][1000 genomes]
rs569326	0.88[EUR][1000 genomes]
rs573592	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.88[EUR][1000 genomes]
rs57529518	0.88[EUR][1000 genomes]
rs577224	1.00[CHB][hapmap]
rs57871852	0.88[EUR][1000 genomes]
rs579192	0.92[EUR][1000 genomes]
rs579362	1.00[CEU][hapmap];1.00[JPT][hapmap];0.96[YRI][hapmap]
rs579373	1.00[CEU][hapmap];1.00[CHB][hapmap];0.91[CHD][hapmap];1.00[JPT][hapmap];0.90[MEX][hapmap];1.00[TSI][hapmap];0.88[EUR][1000 genomes]
rs580242	0.92[EUR][1000 genomes]
rs58169611	0.88[EUR][1000 genomes]
rs58775794	0.88[EUR][1000 genomes]
rs60009036	0.88[EUR][1000 genomes]
rs60094706	0.88[EUR][1000 genomes]
rs61636608	0.88[EUR][1000 genomes]
rs6591540	0.81[EUR][1000 genomes]
rs6591541	0.89[ASW][hapmap];1.00[CEU][hapmap];0.83[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.96[LWK][hapmap];1.00[MEX][hapmap];0.99[MKK][hapmap];1.00[TSI][hapmap];0.96[YRI][hapmap];0.92[EUR][1000 genomes]
rs693110	1.00[CEU][hapmap];1.00[JPT][hapmap];0.95[YRI][hapmap];0.92[EUR][1000 genomes]
rs7108731	0.81[EUR][1000 genomes]
rs7112355	1.00[TSI][hapmap]
rs7114773	1.00[CEU][hapmap];1.00[JPT][hapmap];0.88[EUR][1000 genomes]
rs7116567	1.00[CEU][hapmap];1.00[JPT][hapmap];0.96[YRI][hapmap];0.88[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs7117509	1.00[CEU][hapmap];1.00[TSI][hapmap]
rs7118051	1.00[CEU][hapmap];0.80[YRI][hapmap]
rs7119778	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.88[EUR][1000 genomes]
rs7123969	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[TSI][hapmap];0.86[EUR][1000 genomes]
rs7124813	1.00[CEU][hapmap];1.00[JPT][hapmap];0.96[YRI][hapmap];0.88[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs7126593	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[YRI][hapmap];0.94[AFR][1000 genomes];0.98[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7131059	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.88[EUR][1000 genomes]
rs73486934	0.88[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs73486962	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73486971	0.98[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73486979	0.95[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73486988	0.95[AFR][1000 genomes];0.98[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73486997	0.95[AFR][1000 genomes];0.98[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73488804	0.88[AMR][1000 genomes]
rs7933970	0.86[EUR][1000 genomes]
rs7937245	1.00[CHB][hapmap]
rs7937684	1.00[CHB][hapmap]
rs7941643	0.81[AFR][1000 genomes];0.92[EUR][1000 genomes]
rs7946152	0.88[EUR][1000 genomes]
rs7947036	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.88[EUR][1000 genomes]
rs7947514	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[TSI][hapmap];0.88[EUR][1000 genomes]
rs7952024	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[TSI][hapmap];0.88[EUR][1000 genomes]
rs7952367	0.92[EUR][1000 genomes]
rs8280	0.89[ASW][hapmap];1.00[CEU][hapmap];0.83[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.96[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];0.96[YRI][hapmap];0.92[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv1802782	chr11:59383323-59448068	Genic enhancers Flanking Active TSS Weak transcription Enhancers Strong transcription Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	30 gene(s)	inside rSNPs	diseases
2	nsv832172	chr11:59396407-59431115	Genic enhancers Strong transcription Weak transcription Enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:126 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:59395600-59434600	Weak transcription	Stomach Mucosa	stomach
2	chr11:59402200-59432400	Strong transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
3	chr11:59402200-59434000	Strong transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
4	chr11:59402600-59429000	Strong transcription	Sigmoid Colon	Sigmoid Colon
5	chr11:59402600-59434000	Strong transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
6	chr11:59402600-59434000	Strong transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
7	chr11:59402600-59434200	Strong transcription	Fetal Muscle Trunk	muscle
8	chr11:59402600-59434400	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
9	chr11:59402800-59429800	Strong transcription	Dnd41	blood
10	chr11:59402800-59431600	Strong transcription	Fetal Intestine Large	intestine
11	chr11:59402800-59434200	Strong transcription	Duodenum Mucosa	Duodenum
12	chr11:59402800-59434200	Strong transcription	Fetal Thymus	thymus
13	chr11:59402800-59434400	Strong transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
14	chr11:59403000-59429200	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
15	chr11:59403200-59429000	Strong transcription	Ganglion Eminence derived primary cultured neurospheres	brain
16	chr11:59403200-59434600	Strong transcription	ES-UCSF4 Cell Line	embryonic stem cell
17	chr11:59403400-59430000	Strong transcription	Osteobl	bone
18	chr11:59403400-59434400	Strong transcription	iPS-20b Cell Line	embryonic stem cell
19	chr11:59403400-59434400	Strong transcription	Cortex derived primary cultured neurospheres	brain
20	chr11:59403600-59434600	Strong transcription	HUES48 Cell Line	embryonic stem cell
21	chr11:59403800-59429600	Strong transcription	Brain Germinal Matrix	brain
22	chr11:59403800-59433200	Strong transcription	HMEC	breast
23	chr11:59404000-59434600	Strong transcription	iPS-18 Cell Line	embryonic stem cell
24	chr11:59404200-59434600	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
25	chr11:59404200-59434600	Strong transcription	NH-A	brain
26	chr11:59408200-59434400	Strong transcription	Rectal Mucosa Donor 29	rectum
27	chr11:59409200-59435400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
28	chr11:59412200-59432400	Strong transcription	Fetal Brain Female	brain
29	chr11:59412800-59430200	Strong transcription	HepG2	liver
30	chr11:59412800-59433400	Strong transcription	NHDF-Ad	bronchial
31	chr11:59413000-59434000	Strong transcription	Hela-S3	cervix
32	chr11:59413400-59434800	Strong transcription	HUES64 Cell Line	embryonic stem cell
33	chr11:59413600-59429000	Strong transcription	Fetal Stomach	stomach
34	chr11:59413600-59434800	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
35	chr11:59414400-59434400	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
36	chr11:59415400-59435400	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
37	chr11:59416000-59433200	Strong transcription	K562	blood
38	chr11:59417200-59429000	Strong transcription	Fetal Intestine Small	intestine
39	chr11:59422400-59429200	Strong transcription	Fetal Brain Male	brain
40	chr11:59424200-59434600	Weak transcription	Fetal Heart	heart
41	chr11:59424600-59432200	Weak transcription	Psoas Muscle	Psoas
42	chr11:59424800-59434400	Weak transcription	Pancreatic Islets	Pancreatic Islet
43	chr11:59425200-59429600	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
44	chr11:59425600-59435000	Weak transcription	Small Intestine	intestine
45	chr11:59425600-59435600	Weak transcription	Aorta	Aorta
46	chr11:59425600-59435600	Weak transcription	Gastric	stomach
47	chr11:59425800-59435000	Weak transcription	iPS-15b Cell Line	embryonic stem cell
48	chr11:59425800-59435400	Weak transcription	Pancreas	Pancrea
49	chr11:59426200-59431600	Weak transcription	Brain Cingulate Gyrus	brain
50	chr11:59426200-59432000	Weak transcription	Rectal Smooth Muscle	rectum

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