Variant report

Variant	rs559150
Chromosome Location	chr11:59349287-59349288
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr11:59341720..59344957-chr11:59348853..59352270,3	K562	blood:
2	chr11:59347129..59350032-chr11:59435288..59436881,2	K562	blood:
3	chr11:59340794..59342627-chr11:59347841..59349634,2	K562	blood:

Variant related genes	Relation type
ENSG00000255355	Chromatin interaction
ENSG00000166889	Chromatin interaction

Extended variants
information (count: 76 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:76)

rs_ID	r²[population]
rs11230020	0.91[MEX][hapmap]
rs11230037	0.90[MEX][hapmap]
rs1151063	1.00[MEX][hapmap]
rs1151064	1.00[MEX][hapmap]
rs11821465	0.91[MEX][hapmap]
rs12276505	1.00[CHB][hapmap]
rs12278910	1.00[CHB][hapmap];0.91[MEX][hapmap]
rs12289921	1.00[CHB][hapmap];0.91[MEX][hapmap]
rs12797334	1.00[CHB][hapmap]
rs1287111	1.00[MEX][hapmap]
rs1287449	0.86[AMR][1000 genomes]
rs1299800	1.00[CHB][hapmap];0.84[JPT][hapmap]
rs1453543	0.90[MEX][hapmap]
rs1530995	1.00[ASW][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];0.95[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[YRI][hapmap];0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];0.87[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs17153732	0.80[MEX][hapmap]
rs17153766	0.90[MEX][hapmap]
rs17153910	1.00[CHB][hapmap];0.91[MEX][hapmap]
rs17153962	1.00[ASW][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];0.95[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[YRI][hapmap];0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17153966	1.00[AMR][1000 genomes];0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17153982	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17154025	1.00[JPT][hapmap];1.00[YRI][hapmap]
rs17154142	1.00[JPT][hapmap]
rs1938690	0.91[MEX][hapmap]
rs2198452	0.90[MEX][hapmap]
rs2298868	1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs2298869	1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs2509274	1.00[MEX][hapmap]
rs2509275	0.82[MEX][hapmap]
rs2924491	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs2924493	0.82[ASN][1000 genomes]
rs2927184	1.00[JPT][hapmap];0.86[YRI][hapmap]
rs35770960	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs41340150	1.00[ASW][hapmap];0.83[CHD][hapmap];1.00[JPT][hapmap];0.95[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];0.89[YRI][hapmap];0.82[ASN][1000 genomes]
rs472177	0.91[MEX][hapmap]
rs473490	1.00[CHB][hapmap]
rs473979	1.00[JPT][hapmap];0.89[YRI][hapmap]
rs475145	1.00[JPT][hapmap];1.00[YRI][hapmap]
rs482355	1.00[MEX][hapmap]
rs486952	1.00[ASW][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];0.95[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs488331	1.00[CHB][hapmap];0.82[MEX][hapmap]
rs4939293	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs495564	1.00[CHB][hapmap];0.91[MEX][hapmap]
rs498099	1.00[MEX][hapmap]
rs499037	1.00[ASW][hapmap];0.83[CHD][hapmap];0.95[LWK][hapmap];1.00[MKK][hapmap];0.90[YRI][hapmap]
rs506384	0.84[ASW][hapmap];0.83[CHD][hapmap];1.00[JPT][hapmap];0.83[LWK][hapmap];1.00[MEX][hapmap];0.83[MKK][hapmap]
rs508411	1.00[JPT][hapmap];0.90[YRI][hapmap]
rs512194	1.00[MEX][hapmap]
rs518026	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.84[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs519535	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs520622	1.00[JPT][hapmap]
rs523016	1.00[MEX][hapmap]
rs529270	1.00[MEX][hapmap]
rs533166	1.00[MEX][hapmap]
rs536544	1.00[MEX][hapmap]
rs536910	1.00[CHB][hapmap];0.85[JPT][hapmap]
rs537595	0.83[CHD][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap]
rs540684	1.00[MEX][hapmap]
rs549086	1.00[MEX][hapmap]
rs552601	1.00[MEX][hapmap]
rs553700	1.00[CHB][hapmap]
rs555251	0.84[ASW][hapmap];0.83[CHD][hapmap];1.00[JPT][hapmap];0.91[LWK][hapmap];1.00[MEX][hapmap];0.89[MKK][hapmap];0.82[YRI][hapmap]
rs558505	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs563683	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.91[ASN][1000 genomes]
rs565482	1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs567994	1.00[CHB][hapmap];0.91[MEX][hapmap]
rs572368	0.81[ASN][1000 genomes]
rs577224	1.00[JPT][hapmap];0.90[YRI][hapmap]
rs579362	1.00[CHB][hapmap]
rs579373	1.00[MEX][hapmap]
rs6591541	1.00[CHB][hapmap];0.91[MEX][hapmap]
rs693110	1.00[CHB][hapmap];0.82[JPT][hapmap]
rs7116567	1.00[CHB][hapmap]
rs7124813	1.00[CHB][hapmap]
rs7939527	1.00[JPT][hapmap];0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs7952495	1.00[JPT][hapmap];1.00[YRI][hapmap];0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs8280	1.00[CHB][hapmap];0.91[MEX][hapmap]

No data

Chromatin state (count:125 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:59333800-59351800	Weak transcription	Fetal Heart	heart
2	chr11:59334200-59366200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
3	chr11:59334200-59382000	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
4	chr11:59340600-59350400	Strong transcription	Fetal Muscle Trunk	muscle
5	chr11:59340800-59351000	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
6	chr11:59340800-59351000	Strong transcription	Fetal Brain Female	brain
7	chr11:59340800-59378200	Strong transcription	Fetal Thymus	thymus
8	chr11:59341000-59350200	Strong transcription	Primary mononuclear cells fromperipheralblood	Blood
9	chr11:59341000-59350400	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
10	chr11:59341000-59350400	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
11	chr11:59341000-59350400	Strong transcription	GM12878-XiMat	blood
12	chr11:59341000-59351800	Strong transcription	Liver	Liver
13	chr11:59341200-59350200	Strong transcription	Thymus	Thymus
14	chr11:59341400-59350600	Strong transcription	Primary T helper cells fromperipheralblood	blood
15	chr11:59341400-59351800	Strong transcription	Primary T regulatory cells fromperipheralblood	blood
16	chr11:59341400-59351800	Strong transcription	Monocytes-CD14+_RO01746	blood
17	chr11:59341400-59352000	Strong transcription	Primary neutrophils fromperipheralblood	blood
18	chr11:59341600-59350200	Strong transcription	Lung	lung
19	chr11:59341600-59350400	Strong transcription	Primary T cells fromperipheralblood	blood
20	chr11:59341600-59350400	Strong transcription	K562	blood
21	chr11:59341600-59351800	Strong transcription	Primary B cells from peripheral blood	blood
22	chr11:59342000-59349600	Strong transcription	Primary T helper memory cells from peripheral blood 1	blood
23	chr11:59342000-59350000	Strong transcription	HUES6 Cell Line	embryonic stem cell
24	chr11:59342000-59350000	Strong transcription	Skeletal Muscle Male	skeletal muscle
25	chr11:59342000-59350400	Strong transcription	HUES48 Cell Line	embryonic stem cell
26	chr11:59342000-59350400	Strong transcription	Primary T helper cells PMA-I stimulated	--
27	chr11:59342000-59352000	Strong transcription	Dnd41	blood
28	chr11:59342000-59352400	Strong transcription	Primary monocytes fromperipheralblood	blood
29	chr11:59342000-59352400	Strong transcription	Hela-S3	cervix
30	chr11:59342000-59352600	Strong transcription	Primary T helper naive cells fromperipheralblood	blood
31	chr11:59342000-59379000	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
32	chr11:59342200-59350200	Strong transcription	Left Ventricle	heart
33	chr11:59342200-59350400	Strong transcription	iPS-18 Cell Line	embryonic stem cell
34	chr11:59342200-59350400	Strong transcription	iPS-20b Cell Line	embryonic stem cell
35	chr11:59342200-59350600	Strong transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
36	chr11:59342200-59350600	Strong transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
37	chr11:59342200-59351800	Strong transcription	Primary hematopoietic stem cells short term culture	blood
38	chr11:59342200-59352400	Strong transcription	Rectal Mucosa Donor 29	rectum
39	chr11:59342200-59358000	Strong transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
40	chr11:59342200-59378200	Strong transcription	Primary T helper 17 cells PMA-I stimulated	--
41	chr11:59342400-59349400	Strong transcription	H1 Cell Line	embryonic stem cell
42	chr11:59342400-59349400	Strong transcription	Foreskin Melanocyte Primary Cells skin03	Skin
43	chr11:59342400-59350400	Strong transcription	Duodenum Mucosa	Duodenum
44	chr11:59342400-59350400	Strong transcription	Fetal Lung	lung
45	chr11:59342400-59350600	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
46	chr11:59342400-59351000	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
47	chr11:59342400-59351400	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
48	chr11:59342600-59349800	Strong transcription	Rectal Mucosa Donor 31	rectum
49	chr11:59342600-59350600	Strong transcription	Sigmoid Colon	Sigmoid Colon
50	chr11:59342600-59351600	Strong transcription	Fetal Muscle Leg	muscle

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