The 2.0 version of rSNPBase

Variant report

Variant rs572368
Chromosome Location chr11:59352989-59352990
allele C/T
Outlinks Ensembl   UCSC
Chromatin state (count:124 , 50 per page) page: 1 2 3
No. Chromosome Location Chromatin state Cell line Tissue
1 chr11:59334200-59366200 Weak transcription iPS DF 6.9 Cell Line embryonic stem cell
2 chr11:59334200-59382000 Weak transcription ES-WA7 Cell Line embryonic stem cell
3 chr11:59340800-59378200 Strong transcription Fetal Thymus thymus
4 chr11:59342000-59379000 Strong transcription Foreskin Keratinocyte Primary Cells skin03 Skin
5 chr11:59342200-59358000 Strong transcription Foreskin Keratinocyte Primary Cells skin02 Skin
6 chr11:59342200-59378200 Strong transcription Primary T helper 17 cells PMA-I stimulated --
7 chr11:59343600-59378400 Strong transcription Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells embryonic stem cell
8 chr11:59343800-59382000 Weak transcription iPS DF 19.11 Cell Line embryonic stem cell
9 chr11:59344000-59360400 Weak transcription H1 Derived Neuronal Progenitor Cultured Cells ES cell derived
10 chr11:59346200-59360400 Weak transcription Esophagus oesophagus
11 chr11:59346200-59360400 Weak transcription Right Ventricle heart
12 chr11:59346200-59361000 Weak transcription iPS-15b Cell Line embryonic stem cell
13 chr11:59346600-59360400 Weak transcription H9 Cell Line embryonic stem cell
14 chr11:59346800-59354200 Weak transcription Small Intestine intestine
15 chr11:59347600-59359800 Weak transcription Spleen Spleen
16 chr11:59348200-59355000 Weak transcription Brain Substantia Nigra brain
17 chr11:59348400-59354600 Weak transcription Ovary ovary
18 chr11:59349000-59354000 Weak transcription Rectal Smooth Muscle rectum
19 chr11:59349000-59357600 Weak transcription HUVEC blood vessel
20 chr11:59349000-59359400 Weak transcription Brain Angular Gyrus brain
21 chr11:59350000-59360400 Weak transcription Gastric stomach
22 chr11:59350200-59353000 Weak transcription Left Ventricle heart
23 chr11:59350200-59354200 Weak transcription Rectal Mucosa Donor 31 rectum
24 chr11:59350200-59355800 Weak transcription Aorta Aorta
25 chr11:59350200-59360800 Weak transcription Stomach Mucosa stomach
26 chr11:59350200-59361000 Weak transcription Psoas Muscle Psoas
27 chr11:59350200-59378200 Strong transcription IMR90 fetal lung fibroblasts Cell Line lung
28 chr11:59350400-59360600 Weak transcription NHLF lung
29 chr11:59350600-59354200 Strong transcription Foreskin Melanocyte Primary Cells skin03 Skin
30 chr11:59351200-59354800 Strong transcription Lung lung
31 chr11:59351400-59353000 ZNF genes & repeats Fetal Adrenal Gland Adrenal Gland
32 chr11:59351400-59354600 Strong transcription Brain Hippocampus Middle brain
33 chr11:59351400-59371400 Strong transcription Primary T helper cells fromperipheralblood blood
34 chr11:59351600-59353000 ZNF genes & repeats H1 Cell Line embryonic stem cell
35 chr11:59351600-59353400 ZNF genes & repeats Fetal Intestine Large intestine
36 chr11:59351600-59354400 ZNF genes & repeats hESC Derived CD56+ Mesoderm Cultured Cells ES cell derived
37 chr11:59351600-59357000 Strong transcription H1 BMP4 Derived Trophoblast Cultured Cells ES cell derived
38 chr11:59351800-59353600 Strong transcription Foreskin Fibroblast Primary Cells skin02 Skin
39 chr11:59351800-59369000 Strong transcription Placenta Placenta
40 chr11:59352000-59359600 Weak transcription Brain Cingulate Gyrus brain
41 chr11:59352000-59360400 Weak transcription Pancreas Pancrea
42 chr11:59352200-59353200 Weak transcription Primary T killer memory cells from peripheral blood blood
43 chr11:59352200-59353600 Strong transcription Colonic Mucosa Colon
44 chr11:59352200-59353800 Weak transcription Primary T helper memory cells from peripheral blood 1 blood
45 chr11:59352200-59354000 Weak transcription Fetal Kidney kidney
46 chr11:59352200-59354400 Weak transcription Muscle Satellite Cultured Cells --
47 chr11:59352200-59357400 Weak transcription Brain Dorsolateral Prefrontal Cortex brain
48 chr11:59352200-59357600 Weak transcription Fetal Brain Male brain
49 chr11:59352200-59371200 Strong transcription Primary T cells fromperipheralblood blood
50 chr11:59352400-59353200 Weak transcription hESC Derived CD184+ Endoderm Cultured Cells ES cell derived

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Last update: Aug 31, 2015